The kingdom of Bhutan aims for economic development under a carbon-neutral society by relying on hydropower development. However, the change in the annual total amount and seasonality of river discharge due to climate change may have serious effects on hydropower generation. In this study, we evaluated the change in hydropower generation at existing plants and hydropower potential in Bhutan based on the future river discharge estimated by using several Global Climate Models. We found that the annual total amount of hydropower generation in the whole Bhutan increases at the end of 21st century. As for the monthly generation amount, we found that the amount of power generation in the rainy season (June-September) will increase, and that of at the end of the dry season (April-May) will decrease. In case of existing hydropower plants, we found that although river discharge in rainy season will increase, hydropower generation will not increase due to limitation of the current capacity of the water intake to the plant.