"Kei Terayama,Ai Shinobu,Koji Tsuda,Kazuhiro Takemura,Akio Kitao","evERdock BAI: Machine-learning-guided selection of protein-protein complex structure",,"The Journal of Chemical Physics",,"  151",,"  215104",2019,Dec.
"Kyoko Hanawa-Suetsugu,Yuzuru Itoh,Maisarah Ab Fatah,Tamako Nishimura,Kazuhiro Takemura,Kohei Takeshita,Satoru Kubota,Naoyuki Miyazaki,Wan Nurul Izzati Wan Mohamad Noor,Takehiko Inaba,Nhung Thi Hong Nguyen,Sayaka Hamada-Nakahara,Kayoko Oono-Yakura,Masashi Tachikawa,Kenji Iwasaki,Daisuke Kohda,Masaki Yamamoto,Akio Kitao,Atsushi Shimada,Shiro Suetsugu","Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7",,"Nature Communications",,"  10","  1","  1-13",2019,Nov.
"Yuichi Yokochi,Kazunori Sugiura,Kazuhiro Takemura,Keisuke Yoshida,Satoshi Hara,Ken-ichi Wakabayashi,Akio Kitao,Toru Hisabori","Impact of key residues within chloroplast thioredoxin-f on recognition for reduction and oxidation of target proteins",,"Journal of Biological Chemistry",,"  294","  46","  17437-17450",2019,Nov.
"Justin Chan,Hong-Rui Lin,Kazuhiro Takemura,Kai-Chun Chang,Yuan-Yu Chang,Yasumasa Joti,Akio Kitao,Lee-Wei Yang","An Efficient Timer and Sizer of Biomacromolecular Motions",,"Structure",,,,,2019,Nov.
"Yasumasa Joti,Akio Kitao","Cancellation between auto- and mutual correlation contributions of protein/water dynamics in terahertz time-domain spectra",,"Biophysics and Physicobiology",,"  16",,"  240-247",2019,Nov.
"Kazuhiro Takemura,Akio Kitao","More efficient screening of protein-protein complex model structures for reducing the number of candidates",,"Biophysics and Physicobiology",,"  16",,"  295-303",2019,Nov.
"Kento Shin,Duy Phuoc Tran,Kazuhiro Takemura,Akio Kitao,Kei Terayama,Koji Tsuda","Enhancing Biomolecular Sampling with Reinforcement Learning: A Tree Search Molecular Dynamics Simulation Method",,"ACS Omega",,"  4","  9","  13853-13862",2019,Aug.
"Yasuhiro Onoue,Masayo Iwaki,Ai Shinobu,Yasutaka Nishihara,Hiroto Iwatsuki,Hiroyuki Terashima,Akio Kitao,Hideki Kandori,Michio Homma","Essential ion binding residues for Na+ flow in stator complex of the Vibrio flagellar motor",,"Scientific Reports",,"  9","  1","  1-16",2019,Aug.
"Hiroaki Hata,Masayoshi Nishiyama,Akio Kitao","Molecular dynamics simulation of proteins under high pressure: Structure, function and thermodynamics",,"Biochimica et Biophysica Acta (BBA) - General Subjects",,,,,2019,July
"Hiroshi Nakagawa,Yasumasa Joti,Akio Kitao,Osamu Yamamuro,Mikio Kataoka","Universality and Structural Implications of the Boson Peak in Proteins",,"Biophysical Journal",,"  117","  2","  229-238",2019,July
"Nick Matthews,Akio Kitao,Stephen Laycock,Steven Hayward","Haptic-Assisted Interactive Molecular Docking Incorporating Receptor Flexibility",,"Journal of Chemical Information and Modeling",,"  59","  6","  2900-2912",2019,June
"Yumi Inoue,Yuya Ogawa,Miki Kinoshita,Naoya Terahara,Masafumi Shimada,Noriyuki Kodera,Toshio Ando,Keiichi Namba,Akio Kitao,Katsumi Imada,Tohru Minamino","Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus",,"Structure",,"  27","  6","  965-976. e6",2019,June
"Steven Hayward,Akio Kitao","Multi-strand ƒÀ-sheet of Alzheimer AƒÀ(1?40) folds to ƒÀ-strip helix: implication for protofilament formation",,"Journal of Biomolecular Structure and Dynamics",,"  37","  8","pp. 2143-2153",2019,May
"Duy Phuoc Tran,Akio Kitao","Dissociation Process of a MDM2/p53 Complex Investigated by Parallel Cascade Selection Molecular Dynamics and the Markov State Model",,"The Journal of Physical Chemistry B",,"  123","  11","  2469-2478",2019,Mar.