@book{CTT100756980,
  author = {Masuda, S. and Tanaka, M. and SHINJI MASUDA},
  title = {PICCORO: A technique for manipulating the activity of transcription factors with blue light},
  publisher = {},
  year = 2016,
}

@book{CTT100556425,
  author = {増田真二 and 太田啓之},
  title = {バイオ系のための基礎科学問題集},
  publisher = {講談社サイエンティフィック},
  year = 2007,
}

@book{CTT100757056,
  author = {Chung, Y. and Masuda, S. and Bauer, C.E. and SHINJI MASUDA},
  title = {Purification and Reconstitution of PYP-Phytochrome with Biliverdin and 4-Hydroxycinnamic Acid},
  publisher = {},
  year = 2007,
}

@book{CTT100391426,
  author = {Shinji Masuda and Taka-aki Ono},
  title = {Comparative spectroscopic studies of sensor of blue-light using FAD (BLUF) proteins, AppA of Rhodobacter sphaeroides and YcgF of Escherichia coli.},
  publisher = {Photosynthesis: Fundamental aspects to global perspectives (van der Est and Bruce, D. Edts) Allen Press},
  year = 2005,
}

@book{CTT100757084,
  author = {Masuda, S. and Bauer, C.E. and SHINJI MASUDA},
  title = {The Antirepressor AppA Uses the Novel Flavin-Binding BLUF Domain as a Blue-Light-Absorbing Photoreceptor to Control Photosystem Synthesis},
  publisher = {},
  year = 2005,
}

@book{CTT100540467,
  author = {Shinji Masuda and Carl E. Bauer},
  title = {The antirepressor AppA uses the novel flavin-binding BLUF domain as blue-light-absorbing photoreceptor to control photosystem synthesis.},
  publisher = {Handbook of Photosensory Receptors (Briggs, W. R., and Spudich, J., Eds.) Wiley-VCH Verlag GmbH},
  year = 2005,
}

@book{CTT100500928,
  author = {Masuda, S. and Matsumoto, Y. and Nagashima, K.V.P. and Shimada, K. and Inoue, K. and Bauer, C.E. and Matsuura, K.},
  title = {Characterization of photosynthetic regulatory genes, regA and regB: Studies among different species},
  publisher = {Photosynthesis: Mechanisms and Effects (Garab, G., ed.). Kluwer Academic Publishers},
  year = 1998,
}

@article{CTT100853893,
  author = {Doshun Ito and Hinata Kawamura and Akira Oikawa and Yuta Ihara and Toshio Shibata and Nobuhiro Nakamura and Tsunaki Asano and Shun-Ichiro Kawabata and Takashi Suzuki and Shinji Masuda},
  title = {ppGpp functions as an alarmone in metazoa},
  journal = {Communications Biology},
  year = 2020,
}

@article{CTT100832171,
  author = {Annik Jakob and Hiroshi Nakamura and Atsuko Kobayashi and Yuki Sugimoto and Annegret Wilde and Shinji Masuda},
  title = {The (PATAN)-CheY-Like Response Regulator PixE Interacts with the Motor ATPase PilB1 to Control Negative Phototaxis in the Cyanobacterium Synechocystis sp. PCC 6803},
  journal = {Plant and Cell Physiology},
  year = 2020,
}

@article{CTT100832172,
  author = {Kyohei Harada and Takatoshi Arizono and Ryoichi Sato and Mai Duy Luu Trinh and Akira Hashimoto and Masaru Kono and Masaru Tsujii and Nobuyuki Uozumi and Shinichi Takaichi and Shinji Masuda},
  title = {DAY-LENGTH-DEPENDENT DELAYED-GREENING1, the Arabidopsis Homolog of the Cyanobacterial H+-Extrusion Protein, Is Essential for Chloroplast pH Regulation and Optimization of Non-Photochemical Quenching},
  journal = {Plant and Cell Physiology},
  year = 2019,
}

@article{CTT100832173,
  author = {Takayuki Shimizu and Shinji Masuda},
  title = {Persulphide-responsive transcriptional regulation and metabolism in bacteria},
  journal = {The Journal of Biochemistry},
  year = 2019,
}

@article{CTT100832174,
  author = {Mai Duy Luu Trinh and Ryoichi Sato and Shinji Masuda},
  title = {Genetic characterization of a flap1 null mutation in Arabidopsis npq4 and pgr5 plants suggests that the regulatory role of FLAP1 involves the control of proton homeostasis in chloroplasts},
  journal = {Photosynthesis Research},
  year = 2019,
}

@article{CTT100784858,
  author = {Ryoichi Sato and Masaru Kono and Kyohei Harada and Hiroyuki Ohta and Shinichi Takaichi and Shinji Masuda},
  title = {FLUCTUATING-LIGHT-ACCLIMATION PROTEIN1, Conserved in Oxygenic Phototrophs, Regulates H+ Homeostasis and Non-Photochemical Quenching in Chloroplasts},
  journal = {Plant and Cell Physiology},
  year = 2018,
}

@article{CTT100769393,
  author = {Ryoichi Sato and Rinya Kawashima and Mai Duy Luu Trinh and Masahiro Nakano and Takeharu Nagai and Shinji Masuda},
  title = {Significance of PGR5-dependent cyclic electron flow for optimizing the rate of ATP synthesis and consumption in Arabidopsis chloroplasts},
  journal = {Photosynthesis Research},
  year = 2018,
}

@article{CTT100769394,
  author = {Tomotsumi Fujisawa and SHINJI MASUDA},
  title = {Light-induced chromophore and protein responses and mechanical signal transduction of BLUF proteins},
  journal = {Biophysical Reviews},
  year = 2018,
}

@article{CTT100756816,
  author = {Rinya Kawashima and Ryoichi Sato and Kyohei Harada and Shinji Masuda},
  title = {Relative contributions of PGR5- and NDH-dependent photosystem I cyclic electron flow in the generation of a proton gradient in Arabidopsis chloroplasts},
  journal = {Planta},
  year = 2017,
}

@article{CTT100756976,
  author = {Ryoichi Sato and Masaru Kono and Kyohei Harada and Hiroyuki Ohta and Shinichi Takaichi and Shinji Masuda},
  title = {FLUCTUATING-LIGHT-ACCLIMATION PROTEIN1, Conserved in Oxygenic Phototrophs, Regulates H+ Homeostasis and Non-Photochemical Quenching in Chloroplasts},
  journal = {Plant and Cell Physiology},
  year = 2017,
}

@article{CTT100744034,
  author = {Shinji Masuda},
  title = {Significance of accumulation of the alarmone (p)ppGpp in chloroplasts for controlling photosynthesis and metabolite balance during nitrogen starvation in Arabidopsis.},
  journal = {Photosyn. Res.},
  year = 2017,
}

@article{CTT100807917,
  author = {Doshun Ito and Yuta Ihara and Hidenori Nishihara and Shinji Masuda},
  title = {Phylogenetic analysis of proteins involved in the stringent response in plant cells},
  journal = {Journal of Plant Research},
  year = 2017,
}

@article{CTT100744033,
  author = {Shinji Masuda},
  title = {Characterization of redox-active cysteine residues of persulfide-responsive transcriptional repressor SqrR},
  journal = {Commun. Integr. Biol.},
  year = 2017,
}

@article{CTT100756977,
  author = {Rina Honoki and Sumire Ono and Akira Oikawa and Kazuki Saito and Shinji Masuda},
  title = {Significance of accumulation of the alarmone (p)ppGpp in chloroplasts for controlling photosynthesis and metabolite balance during nitrogen starvation in Arabidopsis},
  journal = {Photosynthesis Research},
  year = 2017,
}

@article{CTT100744032,
  author = {Shinji Masuda},
  title = {Phylogenetic analysis of proteins involved in the stringent response in plant cells},
  journal = {J. Plant Res.},
  year = 2017,
}

@article{CTT100769388,
  author = {Shinji Masuda},
  title = {The sulfide-responsive transcriptional repressor SqrR functions as a master regulator of sulfide-dependent photosynthesis},
  journal = {Proc. Natl. Acad. Sci. USA.},
  year = 2017,
}

@article{CTT100744030,
  author = {Shinji Masuda},
  title = {Genetics of the blue light-dependent signal cascade that controls phototaxis in the cyanobacterium Synechocystis sp. PCC6803.},
  journal = {Plant Cell Physiology},
  year = 2017,
}

@article{CTT100703112,
  author = {Shinji Masuda and Mikiko Tanaka},
  title = {PICCORO：A technique for manipulating the activity of transcription factors with blue light.},
  journal = {Methods in Cell Biology: The Zebrafish, 4th edition, Volume 3-Genetics, Genomics, and Transcriptomics.},
  year = 2016,
}

@article{CTT100714077,
  author = {Ihara, Y. and Masuda, S.},
  title = {Cytosolic ppGpp accumulation induces retarded plant growth and development.},
  journal = {Plant Signal. Behav.},
  year = 2016,
}

@article{CTT100756979,
  author = {Ihara, Y. and Masuda, S. and SHINJI MASUDA},
  title = {Cytosolic ppGpp accumulation induces retarded plant growth and development},
  journal = {Plant Signaling and Behavior},
  year = 2016,
}

@article{CTT100717830,
  author = {Mikika Maekawa and Rina Honoki and Yuta Ihara and Ryoichi Sato and Akira Oikawa and Yuri Kanno and Hiroyuki Ohta and Mitsunori Seo and Kazuki Saito and Shinji Masuda},
  title = {Impact of the plastidial stringent response in plant growth and stress responses.},
  journal = {Nature plants},
  year = 2015,
}

@article{CTT100714084,
  author = {Shimizu, T. and Cheng, Z. and Matsuura, K. and Masuda, S. and Bauer C. E.},
  title = {Evidence that altered cis element spacing affects PpsR mediated redox control of photosynthesis gene expression in Rubrivivax gelatinosus.},
  journal = {PLos ONE},
  year = 2015,
}

@article{CTT100784867,
  author = {Yuta Ihara and Hiroyuki Ohta and Shinji Masuda},
  title = {A highly sensitive quantification method for the accumulation of alarmone ppGpp in Arabidopsis thaliana using UPLC-ESI-qMS/MS},
  journal = {Journal of Plant Research},
  year = 2015,
}

@article{CTT100769389,
  author = {SHINJI MASUDA},
  title = {A highly sensitive quantification method for the accumulation of alarmone ppGpp in Arabidopsis thaliana using UPLC-ESI-qMS/MS.},
  journal = {J. Plant Res.},
  year = 2015,
}

@article{CTT100714081,
  author = {Tsukatani, Y. and Masuda, S.},
  title = {Elucidation of genetic backgrounds necessary for chlorophyll a biosynthesis toward artificial creation of oxygenic photosynthesis.},
  journal = {Origins Life Evol. Biosph.},
  year = 2015,
}

@article{CTT100714083,
  author = {Ren, S. and Sugimoto, Y. and Kobayashi, T. and Masuda, S.},
  title = {Cross-linking analysis reveals the putative dimer structure of the cyanobacterial BLUF photoreceptor PixD.},
  journal = {FEBS Lett.},
  year = 2015,
}

@article{CTT100784866,
  author = {Hikaru Saito and Takaya Oikawa and Shin Hamamoto and Yasuhiro Ishimaru and Miyu Kanamori-Sato and Yuko Sasaki-Sekimoto and Tomoya Utsumi and Jing Chen and Yuri Kanno and Shinji Masuda and Yuji Kamiya and Mitsunori Seo and Nobuyuki Uozumi and Minoru Ueda and Hiroyuki Ohta},
  title = {The jasmonate-responsive GTR1 transporter is required for gibberellin-mediated stamen development in Arabidopsis},
  journal = {Nature Communications},
  year = 2015,
}

@article{CTT100769390,
  author = {SHINJI MASUDA},
  title = {The jasmonate-responsive GTR1 transporter is required for gibberellin-mediated stamen development in Arabidopsis.},
  journal = {Nature Commun.},
  year = 2015,
}

@article{CTT100756984,
  author = {Tsukatani, Y. and Masuda, S. and SHINJI MASUDA},
  title = {Elucidation of Genetic Backgrounds Necessary for Chlorophyll a Biosynthesis Toward Artificial Creation of Oxygenic Photosynthesis},
  journal = {Origins of Life and Evolution of Biospheres},
  year = 2015,
}

@article{CTT100756986,
  author = {Maekawa, M. and Honoki, R. and Ihara, Y. and Sato, R. and Oikawa, A. and Kanno, Y. and Ohta, H. and Seo, M. and Saito, K. and Masuda, S. and SHINJI MASUDA},
  title = {Impact of the plastidial stringent response in plant growth and stress responses},
  journal = {Nature Plants},
  year = 2015,
}

@article{CTT100756985,
  author = {Shimizu, T. and Cheng, Z. and Matsuura, K. and Masuda, S. and Bauer, C.E. and SHINJI MASUDA},
  title = {Evidence that altered cis element spacing affects PpsR mediated redox control of photosynthesis gene expression in Rubrivivax gelatinosus},
  journal = {PLoS ONE},
  year = 2015,
}

@article{CTT100756983,
  author = {Ren, S. and Sugimoto, Y. and Kobayashi, T. and Masuda, S. and SHINJI MASUDA},
  title = {Cross-linking analysis reveals the putative dimer structure of the cyanobacterial BLUF photoreceptor PixD},
  journal = {FEBS Letters},
  year = 2015,
}

@article{CTT100715031,
  author = {Fujisawa, T. and Takeuchi, S. and Masuda, S. and Tahara, T.},
  title = {Signaling-state formation mechanism of a BLUF protein PapB from the purple bacterium Rhodopseudomonas palustris studied by femtosecond time-resolved absorption spectroscopy.},
  journal = {J. Phys. Chem. B},
  year = 2014,
}

@article{CTT100756989,
  author = {Masanori Satoh and Yoshihito Tokaji and Atsushi J. Nagano and Ikuko Hara-Nishimura and Makoto Hayashi and Mikio Nishimura and Hiroyuki Ohta and Shinji Masuda},
  title = {Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses},
  journal = {Plant Physiology and Biochemistry},
  year = 2014,
}

@article{CTT100756990,
  author = {Ryoichi Sato and Hiroyuki Ohta and Shinji Masuda},
  title = {Prediction of respective contribution of linear electron flow and PGR5-dependent cyclic electron flow to non-photochemical quenching induction},
  journal = {Plant Physiology and Biochemistry},
  year = 2014,
}

@article{CTT100712781,
  author = {Hori K and Maruyama F and Fujisawa T and Togashi T and Yamamoto N and Seo M and Sato S and Yamada T and Mori H and Tajima N and Moriyama T and Ikeuchi M and Watanabe M and Wada H and Kobayashi K and Saito M and Masuda T and Sasaki-Sekimoto Y and Mashiguchi K and Awai K and Mie Shimojima and Shinji Masuda and Masako Iwai and Takashi Nobusawa and Takafumi Narise and Satoshi Kondo and Hikaru Saito and Ryoichi Sato and Masato Murakawa and Yuta Ihara and Yui Oshima-Yamada and Kinuka Ohtaka and Masanori Satoh and Kohei Sonobe and Midori Ishii and Ryosuke Ohtani and Miyu Kanamori-Sato and Rina Honoki and Daichi Miyazaki and Hitoshi Mochizuki and Jumpei Umetsu and Kouichi Higashi and Daisuke Shibata and Yuji Kamiya and Naoki Sato and Yasukazu Nakamura and Satoshi Tabata and Shigeru Ida and Ken Kurokawa and Hiroyuki Ohta},
  title = {Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.},
  journal = {},
  year = 2014,
}

@article{CTT100715032,
  author = {Yuzawa, Y. and Shimojima, M. and Sato, R. and Mizusawa, N. and Ikeda, K. and Suzuki, M. and Iwai, M. and Hori, K. and Wada, H. and Masuda, S. and Ohta, H.},
  title = {Cyanobacterial monogalactosyldiacylglycerol-synthesis pathway is involved in normal unsaturation of galactolipids and low-temperature adaptation of Synechocystis sp. PCC 6803.},
  journal = {Biochim. Biophys. Acta},
  year = 2014,
}

@article{CTT100714847,
  author = {Shinji Masuda and Yoshihito Tokaji and Yuichi Kobayashi and Hiroyuki Ohta},
  title = {Mechanisms of induction of the stress-responsive transcription factors HsfA2 and DREB2A by 12-oxo-phytodienoic acid in Arabidopsis thaliana.},
  journal = {Bioscience, biotechnology, and biochemistry},
  year = 2014,
}

@article{CTT100715090,
  author = {Sato, R. and Ohta, H. and Masuda, S.},
  title = {Prediction of respective contribution of linear electron flow and PGR5-dependent cyclic electron flow to non-photochemical quenching induction.},
  journal = {Plant Physiol. Biochem.},
  year = 2014,
}

@article{CTT100717838,
  author = {Yuko Sasaki-Sekimoto and Hikaru Saito and Shinji Masuda and Ken Shirasu and Hiroyuki Ohta},
  title = {Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.},
  journal = {Plant signaling & behavior},
  year = 2014,
}

@article{CTT100756995,
  author = {SHINJI MASUDA},
  title = {Cyanobacterial monogalactosyldiacylglycerol-synthesis pathway is involved in normal unsaturation of galactolipids and low-temperature adaptation of Synechocystis sp. PCC 6803.},
  journal = {Biochim. Biophys. Acta 1841: 475-483.},
  year = 2014,
}

@article{CTT100756991,
  author = {SHINJI MASUDA},
  title = {Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses.},
  journal = {Plant Physiol. Biochem. 81: 90-95.},
  year = 2014,
}

@article{CTT100756992,
  author = {Sasaki-Sekimoto, Y. and Saito, H. and Masuda, S. and Shirasu, K. and Ohta, H. and SHINJI MASUDA},
  title = {Comprehensive analysis of protein interactions between JAZ proteins and BHLH transcription factors that negatively regulate jasmonate signaling},
  journal = {Plant Signaling and Behavior},
  year = 2014,
}

@article{CTT100756993,
  author = {SHINJI MASUDA},
  title = {Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.},
  journal = {Plant Signaling Behavior 9, e27639.},
  year = 2014,
}

@article{CTT100756994,
  author = {Yuzawa, Y. and Shimojima, M. and Sato, R. and Mizusawa, N. and Ikeda, K. and Suzuki, M. and Iwai, M. and Hori, K. and Wada, H. and Masuda, S. and Ohta, H. and SHINJI MASUDA},
  title = {Cyanobacterial monogalactosyldiacylglycerol-synthesis pathway is involved in normal unsaturation of galactolipids and low-temperature adaptation of Synechocystis sp. PCC 6803},
  journal = {Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids},
  year = 2014,
}

@article{CTT100756996,
  author = {SHINJI MASUDA},
  title = {Klebsormidium flaccidum gemone reveals primary factors for plant terrestrial adaptation.},
  journal = {Nature Commun. 5: 3978.},
  year = 2014,
}

@article{CTT100756997,
  author = {Hori, K. and Maruyama, F. and Fujisawa, T. and Togashi, T. and Yamamoto, N. and Seo, M. and Sato, S. and Yamada, T. and Mori, H. and Tajima, N. and Moriyama, T. and Ikeuchi, M. and Watanabe, M. and Wada, H. and Kobayashi, K. and Saito, M. and Masuda, T. and Sasaki-Sekimoto, Y. and Mashiguchi, K. and Awai, K. and Shimojima, M. and Masuda, S. and Iwai, M. and Nobusawa, T. and Narise, T. and Kondo, S. and Saito, H. and Sato, R. and Murakawa, M. and Ihara, Y. and Oshima-Yamada, Y. and Ohtaka, K. and Satoh, M. and Sonobe, K. and Ishii, M. and Ohtani, R. and Kanamori-Sato, M. and Honoki, R. and Miyazaki, D. and Mochizuki, H. and Umetsu, J. and Higashi, K. and Shibata, D. and Kamiya, Y. and Sato, N. and Nakamura, Y. and Tabata, S. and Ida, S. and Kurokawa, K. and Ohta, H. and SHINJI MASUDA},
  title = {Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation},
  journal = {Nature Communications},
  year = 2014,
}

@article{CTT100756998,
  author = {Masuda, S. and Tokaji, Y. and Kobayashi, Y. and Ohta, H. and SHINJI MASUDA},
  title = {Mechanisms of induction of the stress-responsive transcription factors HsfA2 and DREB2A by 12-oxo-phytodienoic acid in Arabidopsis thaliana},
  journal = {Bioscience, Biotechnology and Biochemistry},
  year = 2014,
}

@article{CTT100756999,
  author = {SHINJI MASUDA},
  title = {Mechanisms of induction of the stress-responsive transcription factors HsfA2 and DREB2A by 12-oxo-phytodienoic acid in Arabidopsis thaliana.},
  journal = {Biosci. Biotech. Biochem. 78: 647-650.},
  year = 2014,
}

@article{CTT100757000,
  author = {SHINJI MASUDA},
  title = {Prediction of respective contribution of linear electron flow and PGR5-dependent cyclic electron flow to non-photochemical quenching induction.},
  journal = {Plant Physiol. Biochem. 81: 190-196.},
  year = 2014,
}

@article{CTT100757001,
  author = {Fujisawa, T. and Takeuchi, S. and Masuda, S. and Tahara, T. and SHINJI MASUDA},
  title = {Signaling-state formation mechanism of a BLUF protein PapB from the purple bacterium Rhodopseudomonas palustris studied by femtosecond time-resolved absorption spectroscopy},
  journal = {Journal of Physical Chemistry B},
  year = 2014,
}

@article{CTT100757002,
  author = {SHINJI MASUDA},
  title = {Signaling-state formation mechanism of a BLUF protein PapB from the purple bacterium Rhodopseudomonas palustris studied by femtosecond time-resolved absorption spectroscopy.},
  journal = {J. Phys. Chem. B 118: 14761-14773.},
  year = 2014,
}

@article{CTT100715091,
  author = {Satoh, M. and Tokaji, Y. and Nagano, A.J. and Hara-Nishimura, I. and Hayashi, M. and Nishimura, M. and Ohta, H. and Masuda, S.},
  title = {Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses.},
  journal = {Plant Physiol. Biochem.},
  year = 2013,
}

@article{CTT100715093,
  author = {Shimojima, M. and Watanabe, T. and Madoka, Y. and Koizumi, R. and Yamamoto, M. P. and Masuda, K. and Yamada, K. and Masuda, S. and Ohta, H.},
  title = {Differential regulation of two types of monogalactosyldiacylglycerol synthase in membrane lipid remodeling under phosphate-limited conditions in sesame plants.},
  journal = {Front. Plant Sci.},
  year = 2013,
}

@article{CTT100676356,
  author = {SHINJI MASUDA and Yuki Nakatani and Shukun Ren and Mikiko Tanaka},
  title = {Blue light-mediated manipulation of transcription factor activity in vivo.},
  journal = {ACS Chemical Biology},
  year = 2013,
}

@article{CTT100717845,
  author = {Yuko Sasaki-Sekimoto and Yusuke Jikumaru and Takeshi Obayashi and Hikaru Saito and Shinji Masuda and Yuji Kamiya and Hiroyuki Ohta and Ken Shirasu},
  title = {bHLH transcription factors JA-ASSOCIATED MYC2-LIKE 1, JAM2 and JAM3 are negative regulators of jasmonate responses in Arabidopsis.},
  journal = {Plant physiology},
  year = 2013,
}

@article{CTT100717849,
  author = {Shukun Ren and Ryoichi Sato and Koji Hasegawa and Hiroyuki Ohta and Shinji Masuda},
  title = {A Predicted Structure for the PixD-PixE Complex Determined by Homology Modeling, Docking Simulations, and a Mutagenesis Study.},
  journal = {Biochemistry},
  year = 2013,
}

@article{CTT100757013,
  author = {SHINJI MASUDA},
  title = {Inhibition of Arabidopsis hypocotyl elongation by jasmonates is enhanced under red light in phytochrome B dependent manner.},
  journal = {J. Plant Res. 126: 161-168.},
  year = 2013,
}

@article{CTT100757012,
  author = {SHINJI MASUDA},
  title = {Differential regulation of two types of monogalactosyldiacylglycerol synthase in membrane lipid remodeling under phosphate-limited conditions in sesame plants.},
  journal = {Front. Plant Sci. 4: 469.},
  year = 2013,
}

@article{CTT100662256,
  author = {Jing Chen and Kohei Sonobe and Narihito Ogawa and Shinji Masuda and Akira Nagatani and Yuichi Kobayashi and Hiroyuki Ohta},
  title = {Inhibition of arabidopsis hypocotyl elongation by jasmonates is enhanced under red light in phytochrome B dependent manner},
  journal = {J. PLANT RES.},
  year = 2013,
}

@article{CTT100757006,
  author = {Ren, S. and Sato, R. and Hasegawa, K. and Ohta, H. and Masuda, S. and SHINJI MASUDA},
  title = {A predicted structure for the PixD-PixE complex determined by homology modeling, docking simulations, and a mutagenesis study},
  journal = {Biochemistry},
  year = 2013,
}

@article{CTT100757007,
  author = {Sasaki-Sekimoto, Y. and Jikumaru, Y. and Obayashi, T. and Saito, H. and Masuda, S. and Kamiya, Y. and Ohta, H. and Shirasu, K. and SHINJI MASUDA},
  title = {Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis},
  journal = {Plant Physiology},
  year = 2013,
}

@article{CTT100757011,
  author = {Shimojima, M. and Watanabe, T. and Madoka, Y. and Koizumi, R. and Yamamoto, M.P. and Masuda, K. and Yamada, K. and Masuda, S. and Ohta, H. and SHINJI MASUDA},
  title = {Differential regulation of two types of monogalactosyldiacylglycerol synthase in membrane lipid remodeling under phosphate-limited conditions in sesame plants},
  journal = {Frontiers in Plant Science},
  year = 2013,
}

@article{CTT100757010,
  author = {SHINJI MASUDA},
  title = {Blue light-mediated manipulation of transcription factor activity in vivo.},
  journal = {ACS Chem. Biol. 8: 2649-2653.},
  year = 2013,
}

@article{CTT100757009,
  author = {Masuda, S. and Nakatani, Y. and Ren, S. and Tanaka, M. and SHINJI MASUDA},
  title = {Blue light-mediated manipulation of transcription factor activity in vivo},
  journal = {ACS Chemical Biology},
  year = 2013,
}

@article{CTT100757016,
  author = {SHINJI MASUDA},
  title = {Whole-genome sequence of the purple photosynthetic bacterium Rhodovulum sulfidophilum strain W4.},
  journal = {Genome Announcements 1: e00577-13.},
  year = 2013,
}

@article{CTT100757015,
  author = {Masuda, S. and SHINJI MASUDA},
  title = {Light detection and signal transduction in the BLUF photoreceptors},
  journal = {Plant and Cell Physiology},
  year = 2013,
}

@article{CTT100757008,
  author = {SHINJI MASUDA},
  title = {Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATEDMYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis.},
  journal = {Plant Physiol. 163: 291-304.},
  year = 2013,
}

@article{CTT100757005,
  author = {SHINJI MASUDA},
  title = {A predicted structure for the PixD-PixE complex determined by homology modeling, docking simulation, and a mutagenesis study.},
  journal = {Biochemistry 52: 1272-1279.},
  year = 2013,
}

@article{CTT100757014,
  author = {Chen, J. and Sonobe, K. and Ogawa, N. and Masuda, S. and Nagatani, A. and Kobayashi, Y. and Ohta, H. and SHINJI MASUDA},
  title = {Inhibition of arabidopsis hypocotyl elongation by jasmonates is enhanced under red light in phytochrome B dependent manner},
  journal = {Journal of Plant Research},
  year = 2013,
}

@article{CTT100757003,
  author = {Awakawa, T. and Sugai, Y. and Otsutomo, K. and Ren, S. and Masuda, S. and Katsuyama, Y. and Horinouchi, S. and Ohnishi, Y. and SHINJI MASUDA},
  title = {4-Hydroxy-3-methyl-6-(1-methyl-2-oxoalkyl)pyran-2-one Synthesis by a Type III Polyketide Synthase from Rhodospirillum centenum},
  journal = {ChemBioChem},
  year = 2013,
}

@article{CTT100757004,
  author = {SHINJI MASUDA},
  title = {4-hydroxy-3-methyl-6-(1-methyl-2-oxoalkyl)pyran-2-one synthesis by a type III polyketide synthase from Rhodospirillum centenum.},
  journal = {ChemBioChem 14: 1006-1013.},
  year = 2013,
}

@article{CTT100634238,
  author = {Yuichi Yuzawa and Hidenori Nishihara and Tsuyoshi Haraguchi and Shinji Masuda and Mie Shimojima and Atsushi Shimoyama and Hideya Yuasa and Norihiro Okada and Hiroyuki Ohta},
  title = {Phylogeny of Galactolipid Synthase Homologs Together with Their Enzymatic Analyses Revealed A Possible Origin and Divergence Time for Photosynthetic Membrane Biogenesis},
  journal = {DNA Research},
  year = 2012,
}

@article{CTT100757021,
  author = {Yuzawa, Y. and Nishihara, H. and Haraguchi, T. and Masuda, S. and Shimojima, M. and Shimoyama, A. and Yuasa, H. and Okada, N. and Ohta, H. and SHINJI MASUDA},
  title = {Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic membrane biogenesis},
  journal = {DNA Research},
  year = 2012,
}

@article{CTT100757018,
  author = {SHINJI MASUDA},
  title = {A PixD-PapB chimeric protein reveals the function of the BLUF domain C-terminal α-helices for light signal transduction.},
  journal = {Plant Cell Physiol. 53: 1638-1647.},
  year = 2012,
}

@article{CTT100757017,
  author = {Ren, S. and Sawada, M. and Hasegawa, K. and Hayakawa, Y. and Ohta, H. and Masuda, S. and SHINJI MASUDA},
  title = {A PixD - PapB chimeric protein reveals the function of the BLUF domain C-terminal α-helices for light signal transduction},
  journal = {Plant and Cell Physiology},
  year = 2012,
}

@article{CTT100757019,
  author = {Unno, M. and Tsukiji, Y. and Kubota, K. and Masuda, S. and SHINJI MASUDA},
  title = {N-Terminal truncation does not affect the location of a conserved tryptophan in the BLUF domain of appa from rhodobacter sphaeroides},
  journal = {Journal of Physical Chemistry B},
  year = 2012,
}

@article{CTT100757020,
  author = {SHINJI MASUDA},
  title = {N-terminal truncation does not affect the location of a conserved tryptophan in the BLUF domain of AppA from Rhodobacter sphaeroides.},
  journal = {J. Phys. Chem. B 116: 8974-8980.},
  year = 2012,
}

@article{CTT100757022,
  author = {SHINJI MASUDA},
  title = {Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic membrane biogenesis.},
  journal = {DNA Res. 19: 91-102.},
  year = 2012,
}

@article{CTT100721797,
  author = {SHINJI MASUDA and Harada, Jiro and Yokono, Makio and Yuichi Yuzawa and Mie Shimojima and Kazuhiro Murofushi and Hironori Tanaka and Hanako Masuda and Masato Murakawa and Haraguchi, Tsuyoshi and Kondo, Maki and Nishimura, Mikio and HIDEYA YUASA and Noguchi, Masato and Oh-oka, Hirozo and Tanaka, Ayumi and Tamiaki, Hitoshi and HIROYUKI OHTA},
  title = {A Monogalactosyldiacylglycerol Synthase Found in the Green Sulfur Bacterium Chlorobaculum tepidum Reveals Important Roles for Galactolipids in Photosynthesis},
  journal = {Plant Cell},
  year = 2011,
}

@article{CTT100757027,
  author = {Kondo, T. and Masuda, S. and Tsutsui, K. and Mino, H. and SHINJI MASUDA},
  title = {Temperature dependence of relaxation time of a stable radical pair in SyPixD investigated by pulsed EPR},
  journal = {Chemical Physics Letters},
  year = 2011,
}

@article{CTT100757023,
  author = {Masuda, S. and Harada, J. and Yokono, M. and Yuzawa, Y. and Shimojima, M. and Murofushi, K. and Tanaka, H. and Masuda, H. and Murakawa, M. and Haraguchi, T. and Kondo, M. and Nishimura, M. and Yuasa, H. and Noguchi, M. and Oh-Oka, H. and Tanaka, A. and Tamiaki, H. and Ohta, H. and SHINJI MASUDA},
  title = {A monogalactosyldiacylglycerol synthase found in the green sulfur bacterium Chlorobaculum tepidum reveals important roles for galactolipids in photosynthesis},
  journal = {Plant Cell},
  year = 2011,
}

@article{CTT100757024,
  author = {SHINJI MASUDA},
  title = {A monogalactosyldiacylglycerol synthase found in the green sulfur bacterium Chlorobaculum tepidum reveals important roles for galactolipids in photosynthesis.},
  journal = {Plant Cell 23: 2644-2658.},
  year = 2011,
}

@article{CTT100757025,
  author = {Kondo, T. and Masuda, S. and Mino, H. and SHINJI MASUDA},
  title = {Pulsed EPR Analysis of the Photo-Induced Triplet Radical Pair in the BLUF Protein SyPixD: Determination of the Protein-Protein Distance and Orientation in the Oligomeric Protein},
  journal = {Applied Magnetic Resonance},
  year = 2011,
}

@article{CTT100757026,
  author = {SHINJI MASUDA},
  title = {Pulsed ESR analysis of the photo-induced triplet radical pair in the BLUF protein SyPixD: Determination of the protein-protein distance and orientation in the oligomeric protein.},
  journal = {Appl. Magn. Reson. 40: 545-555.},
  year = 2011,
}

@article{CTT100757028,
  author = {SHINJI MASUDA},
  title = {Temperature dependence of relaxation time of a stable radical pair in SyPixD investigated by pulsed EPR.},
  journal = {Chem. Phys. Lett. 501: 528-533.},
  year = 2011,
}

@article{CTT100630966,
  author = {Takafumi Narise and 小林康一 and Mie Shimojima and SHINJI MASUDA and HIROYUKI OHTA},
  title = {Involvement of auxin signaling mediated by IAA14 and ARF7/19 in membrane lipid remodeling during phosphate starvation.},
  journal = {Plant Mol Biol.},
  year = 2010,
}

@article{CTT100757034,
  author = {SHINJI MASUDA},
  title = {Structural refinement of a key tryptophan residue in the BLUF photoreceptor AppA by ultraviolet resonance Raman spectroscopy.},
  journal = {Biophys. J. 98: 1949-1956.},
  year = 2010,
}

@article{CTT100757035,
  author = {Unno, M. and Kikuchi, S. and Masuda, S. and SHINJI MASUDA},
  title = {Structural refinement of a key tryptophan residue in the BLUF photoreceptor AppA by ultraviolet resonance raman spectroscopy},
  journal = {Biophysical Journal},
  year = 2010,
}

@article{CTT100757036,
  author = {SHINJI MASUDA},
  title = {Temperature sensitive reaction of a photosensor protein YcgF: Possibility of a role of temperature sensor.},
  journal = {Biochemistry 49: 2288-2296.},
  year = 2010,
}

@article{CTT100757037,
  author = {Nakasone, Y. and Ono, T.-A. and Ishii, A. and Masuda, S. and Terazima, M. and SHINJI MASUDA},
  title = {Temperature-sensitive reaction of a photosensor protein YcgF: Possibility of a role of temperature sensor},
  journal = {Biochemistry},
  year = 2010,
}

@article{CTT100757030,
  author = {Kanazawa, T. and Ren, S. and Maekawa, M. and Hasegawa, K. and Arisaka, F. and Hyodo, M. and Hayakawa, Y. and Ohta, H. and Masuda, S. and SHINJI MASUDA},
  title = {Biochemical and physiological characterization of a BLUF protein-EAL protein complex involved in blue light-dependent degradation of cyclic diguanylate in the purple bacterium rhodopseudomonas palustris},
  journal = {Biochemistry},
  year = 2010,
}

@article{CTT100757029,
  author = {SHINJI MASUDA},
  title = {Biochemical and physiological characterization of a BLUF protein-EAL protein complex involved in blue light-dependent degradation of cyclic diguanylate in the purple bacterium Rhodopseudomonas palustris.},
  journal = {Biochemistry 49: 10647-10655.},
  year = 2010,
}

@article{CTT100757032,
  author = {SHINJI MASUDA},
  title = {Involvement of auxin signaling mediated by IAA14 and ARF7/19 in membrane lipid remodeling during phosphate starvation.},
  journal = {Plant Mol. Biol. 72: 533-544.},
  year = 2010,
}

@article{CTT100757031,
  author = {Narise, T. and Kobayashi, K. and Baba, S. and Shimojima, M. and Masuda, S. and Fukaki, H. and Ohta, H. and SHINJI MASUDA},
  title = {Involvement of auxin signaling mediated by IAA14 and ARF7/19 in membrane lipid remodeling during phosphate starvation},
  journal = {Plant Molecular Biology},
  year = 2010,
}

@article{CTT100586764,
  author = {Masuda, S. and Hasegawa, K. and Ohta, H. and Ono, T.},
  title = {Crucial role in light signal transduction for the conserved Met93 of the BLUF protein PixD/Slr1694.},
  journal = {Plant Cell Physiol. 49(10):1600-6.},
  year = 2009,
}

@article{CTT100757038,
  author = {Masuda, S. and Ikeda, R. and Masuda, T. and Hashimoto, H. and Tsuchiya, T. and Kojima, H. and Nomata, J. and Fujita, Y. and Mimuro, M. and Ohta, H. and Takamiya, K.-I. and SHINJI MASUDA},
  title = {Prolamellar bodies formed by cyanobacterial protochlorophyllide oxidoreductase in Arabidopsis},
  journal = {Plant Journal},
  year = 2009,
}

@article{CTT100757039,
  author = {SHINJI MASUDA},
  title = {Prolamellar bodies formed by cyanobacterial protochlorophyllide oxidoreductase in Arabidopsis.},
  journal = {Plant J. 58: 952-960.},
  year = 2009,
}

@article{CTT100586769,
  author = {SHINJI MASUDA and Ikeda, R. and TATSURU MASUDA and Hashimoto, H. and Tsuchiya, T. and Kojima, H. and Nomata, J. and Fujita, Y. and Mimuro, M. and HIROYUKI OHTA and KEN-ICHIRO TAKAMIYA},
  title = {Prolamellar bodies formed by cyanobacterial protochlorophyllide oxidoreductase in Arabidopsis.},
  journal = {Plant J.},
  year = 2009,
}

@article{CTT100757044,
  author = {Masuda, S. and Tozawa, Y. and Ohta, H. and SHINJI MASUDA},
  title = {Possible targets of "magic spots" in plant signalling},
  journal = {Plant Signaling and Behavior},
  year = 2008,
}

@article{CTT100586765,
  author = {Mizusawa, K. and Masuda, S. and Ohta, H.},
  title = {Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana.},
  journal = {Planta},
  year = 2008,
}

@article{CTT100588355,
  author = {Masuda, S. and Tozawa, Y. and Ohta, H.},
  title = {Possible targets of “magic spots” in plant signaling.},
  journal = {Plant Signaling Behavior.},
  year = 2008,
}

@article{CTT100757040,
  author = {Masuda, S. and Hasegawa, K. and Ohta, H. and Ono, T.-A. and SHINJI MASUDA},
  title = {Crucial role in light signal transduction for the conserved Met93 of the BLUF protein PixD/Slr1694},
  journal = {Plant and Cell Physiology},
  year = 2008,
}

@article{CTT100757041,
  author = {SHINJI MASUDA},
  title = {Crucial role in light signal transduction for the conserved Met93 of the BLUF protein PixD/Slr1694.},
  journal = {Plant Cell Physiol. 49: 1600-1606.},
  year = 2008,
}

@article{CTT100757042,
  author = {Mizusawa, K. and Masuda, S. and Ohta, H. and SHINJI MASUDA},
  title = {Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana},
  journal = {Planta},
  year = 2008,
}

@article{CTT100757043,
  author = {SHINJI MASUDA},
  title = {Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana.},
  journal = {Planta 228: 553-562.},
  year = 2008,
}

@article{CTT100757045,
  author = {SHINJI MASUDA},
  title = {Possible targets of “magic spots” in plant signaling.},
  journal = {Plant Signaling Behavior 3: 1021-1023.},
  year = 2008,
}

@article{CTT100757046,
  author = {Masuda, S. and Berleman, J. and Hasselbring, B.M. and Bauer, C.E. and SHINJI MASUDA},
  title = {Regulation of aerobic photosystem synthesis in the purple bacterium Rhodospirillum centenum by CrtJ and AerR},
  journal = {Photochemical and Photobiological Sciences},
  year = 2008,
}

@article{CTT100757047,
  author = {SHINJI MASUDA},
  title = {Regulation of aerobic photosystem synthesis in the purple bacterium Rhodospirillum centenum.},
  journal = {Photochem. Photobiol. Sci. 7: 1267-1272.},
  year = 2008,
}

@article{CTT100757048,
  author = {Masuda, S. and Mizusawa, K. and Narisawa, T. and Tozawa, Y. and Ohta, H. and Takamiya, K.-I. and SHINJI MASUDA},
  title = {The bacterial stringent response, conserved in chloroplasts, controls plant fertilization},
  journal = {Plant and Cell Physiology},
  year = 2008,
}

@article{CTT100757049,
  author = {SHINJI MASUDA},
  title = {The bacterial stringent response, conserved in chloroplasts, controls plant fertilization.},
  journal = {Plant Cell Physiol. 49: 135-141.},
  year = 2008,
}

@article{CTT100556495,
  author = {Masuda, S. and Mizusawa, K. and Narisawa, T. and Tozawa, Y. and Ohta, H. and Takamiya, K.},
  title = {The Bacterial Stringent Response, Conserved in Chloroplasts, Controls Plant Fertilization,},
  journal = {Plant Cell Physiol},
  year = 2008,
}

@article{CTT100772477,
  author = {Wakita, M. and Masuda, S. and Motohashi, K. and Hisabori, T. and Ohta, H. and Takamiya, K. and Wakita, M. and Motohashi, K. and Hisabori, T and .Ohta, H. and Takamiya, K.},
  title = {The significance of Type II and PrxQ peroxiredoxins for antioxidative stress response in the purple bacterium Rhodobacter sphaeroides.},
  journal = {J. Biol. Chem},
  year = 2007,
}

@article{CTT100548768,
  author = {Nakasone, Y. and Ono, T. and Ishii, A. and Masuda, S. and Terazima, M.},
  title = {Transient dimerization and conformational change of a BLUF protein: YcgF},
  journal = {J. Am. Chem. Soc.},
  year = 2007,
}

@article{CTT100548771,
  author = {Tozawa, Y. and Nozawa, A. and Kanno, T. and Narisawa, T. and Masuda, S. and Kasai, K. and Nanamiya, H.},
  title = {Calcium-activated (p)ppGpp synthetase in chloroplasts of land plants.},
  journal = {J. Biol. Chem},
  year = 2007,
}

@article{CTT100548770,
  author = {Hiroshi SHIMADA and Mochizuki, M. and Ogura, K. and Froehlich, J. E. and Osteryoung, K. W. and Shirano, Y. and Shibata, D. and Masuda, S. and Mori, K. and KEN-ICHIRO TAKAMIYA},
  title = {Arabidopsis cotyledon-specific chloroplast biogenesis factor CYO1 is a protein disulfide isomerase.},
  journal = {Plant Cell},
  year = 2007,
}

@article{CTT100757052,
  author = {Shimada, H. and Mochizuki, M. and Ogura, K. and Froehlich, J.E. and Osteryoung, K.W. and Shirano, Y. and Shibata, D. and Masuda, S. and Mori, K. and Takamiya, K.-I. and SHINJI MASUDA},
  title = {Arabidopsis cotyledon-specific chloroplast biogenesis factor CYO1 is a protein disulfide isomerase},
  journal = {Plant Cell},
  year = 2007,
}

@article{CTT100757053,
  author = {SHINJI MASUDA},
  title = {Arabidopsis cotyledon-specific chloroplast biogenesis factor CYO1 is a protein disulfide isomerase.},
  journal = {Plant Cell 19: 3157-3169.},
  year = 2007,
}

@article{CTT100757054,
  author = {Tozawa, Y. and Nozawa, A. and Kanno, T. and Narisawa, T. and Masuda, S. and Kasai, K. and Nanamiya, H. and SHINJI MASUDA},
  title = {Calcium-activated (p)ppGpp synthetase in chloroplasts of land plants},
  journal = {Journal of Biological Chemistry},
  year = 2007,
}

@article{CTT100757055,
  author = {SHINJI MASUDA},
  title = {Calcium-activated (p)ppGpp synthetase in chloroplasts of land plants.},
  journal = {J. Biol. Chem. 282: 35536-35545.},
  year = 2007,
}

@article{CTT100757057,
  author = {SHINJI MASUDA},
  title = {Purification and reconstitution of PYP-phytochrome with biliverdin and 4-hydroxycinnamic acid.},
  journal = {Methods Enzymol. 422: 184-189.},
  year = 2007,
}

@article{CTT100757058,
  author = {Masuda, S. and Tomida, Y. and Ohta, H. and Takamiya, K.-i. and SHINJI MASUDA},
  title = {The Critical Role of a Hydrogen Bond between Gln63 and Trp104 in the Blue-Light Sensing BLUF Domain That Controls AppA Activity},
  journal = {Journal of Molecular Biology},
  year = 2007,
}

@article{CTT100757059,
  author = {SHINJI MASUDA},
  title = {The critical role of a hydrogen bond between Gln63 and Trp104 in the blue-light sensing BLUF domain that controls AppA activity.},
  journal = {J. Mol. Biol. 368: 1223-1230.},
  year = 2007,
}

@article{CTT100757063,
  author = {SHINJI MASUDA},
  title = {Transient dimerization and conformational change of a BLUF protein: YcgF.},
  journal = {J. Am. Chem. Soc. 129: 7028-7035.},
  year = 2007,
}

@article{CTT100757062,
  author = {Nakasone, Y. and Ono, T.-A. and Ishii, A. and Masuda, S. and Terazima, M. and SHINJI MASUDA},
  title = {Transient dimerization and conformational change of a BLUF protein: YcgF},
  journal = {Journal of the American Chemical Society},
  year = 2007,
}

@article{CTT100548764,
  author = {Chung, Y. and Masuda, S. and Bauer, C. E.},
  title = {Purification and reconstitution of PYP-phytochrome with biliverdin and 4-hydroxycinnamic acid.},
  journal = {Methods Enzymol},
  year = 2007,
}

@article{CTT100556740,
  author = {Masuda, S. and Tomida, Y. and Ohta, H. and Takamiya, K.},
  title = {The critical role of a hydrogen bond between Gln63 and Trp104 in the blue-light sensing BLUF domain that controls AppA activity.},
  journal = {J. Mol. Biol},
  year = 2007,
}

@article{CTT100769385,
  author = {SHINJI MASUDA},
  title = {A new membrane-bound cytochrome c works as an electron donor to the photosynthetic reaction center complex in the purple bacterium, Rhodovulum sulfidophilum.},
  journal = {J. Biol. Chem. 282: 6463-6472.},
  year = 2007,
}

@article{CTT100757069,
  author = {Unno, M. and Masuda, S. and Ono, T.-A. and Yamauchi, S. and SHINJI MASUDA},
  title = {Orientation of a key glutamine residue in the BLUF domain from AppA revealed by mutagenesis, spectroscopy, and quantum chemical calculations},
  journal = {Journal of the American Chemical Society},
  year = 2006,
}

@article{CTT100524888,
  author = {Yuan, H. and Anderson, S. and Masuda, S. and Dragnea, V. and Moffat, K. and Bauer, C.},
  title = {Crystal structure of the Synechocystis photoreceptor Slr1694 reveal distinct structural states related to signaling},
  journal = {Biochemistry},
  year = 2006,
}

@article{CTT100542505,
  author = {Unno, M. and Masuda, S. and Ono, T. and Yamauchi, S.},
  title = {Orientation of a key glutamine residue in the BLUF domain from AppA revealed by mutagenesis, spectroscopy, and quantum chemical calculations.},
  journal = {J. Am. Chem. Soc},
  year = 2006,
}

@article{CTT100542502,
  author = {Hasegawa, K. and Masuda, S. and Ono, T.},
  title = {Light-induced structural changes of a full-length protein and its BLUF domain in YcgF(BlrP), a blue-light sensing protein that uses FAD (BLUF).},
  journal = {Biochemistry},
  year = 2006,
}

@article{CTT100757066,
  author = {SHINJI MASUDA},
  title = {Light induced structural changes of a full-length protein and its BLUF domain in YcgF (Blrp), a blue-light sensing protein that uses FAD (BLUF).},
  journal = {Biochemistry 45, 3785-3793.},
  year = 2006,
}

@article{CTT100757067,
  author = {Hasegawa, K. and Masuda, S. and Ono, T.-A. and SHINJI MASUDA},
  title = {Light induced structural changes of a full-length protein and its BLUF domain in YcgF(Blrp), a blue-light sensing protein that uses FAD (BLUF)},
  journal = {Biochemistry},
  year = 2006,
}

@article{CTT100757064,
  author = {Yuan, H. and Anderson, S. and Masuda, S. and Dragnea, V. and Moffat, K. and Bauer, C. and SHINJI MASUDA},
  title = {Crystal structures of the Synechocystis photoreceptor Slr1694 reveal distinct structural states related to signaling},
  journal = {Biochemistry},
  year = 2006,
}

@article{CTT100757065,
  author = {SHINJI MASUDA},
  title = {Crystal structures of the Synechocystis photoreceptor Slr1694 reveal distinct structural states related to signaling.},
  journal = {Biochemistry 45, 12687-12694.},
  year = 2006,
}

@article{CTT100757068,
  author = {SHINJI MASUDA},
  title = {Orientation of a key Glutamine residue in the BLUF domain from AppA revealed by mutagenesis, spectroscopy, and quantum chemical calculations.},
  journal = {J. Am. Chem. Soc. 128, 5638-5639.},
  year = 2006,
}

@article{CTT100769387,
  author = {Makihara, F. and Tsuzuki, M. and Sato, K. and Masuda, S. and Nagashima, K.V.P. and Abo, M. and Okubo, A. and SHINJI MASUDA},
  title = {Role of trehalose synthesis pathways in salt tolerance mechanism of Rhodobacter sphaeroides f. sp. denitrificans IL106},
  journal = {Archives of Microbiology},
  year = 2005,
}

@article{CTT100391442,
  author = {Masuda, S. and Hasegawa, K. and Ono, T.},
  title = {Adenosine diphosphate moiety does not participate in structural changes for the signaling state in the sensor of blue-light using FAD domain of AppA.},
  journal = {FEBS Lett.},
  year = 2005,
}

@article{CTT100391440,
  author = {Masuda, S. and Ono, T.},
  title = {Adenylyl cycles activity of Cya1 from the cyanobacterium Synechocystis sp. PCC 6803 is inhibited by bicarbonate.},
  journal = {J. Bacteriol.},
  year = 2005,
}

@article{CTT100391437,
  author = {Unno, M. and Sano, R. and Masuda, S. and Ono, T. and Yamauchi, S.},
  title = {Light-induced structural changes in the active site of the BLUF domain in AppA by Raman spectroscopy.},
  journal = {J. Phys. Chem. B},
  year = 2005,
}

@article{CTT100391434,
  author = {Anderson, S. and Dragnea, V. and Masuda, S. and Ybe, J. and Moffat, K. and Bauer, C. E.},
  title = {Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides.},
  journal = {Biochemistry},
  year = 2005,
}

@article{CTT100757070,
  author = {Masuda, S. and Hasegawa, K. and Ono, T.-A. and SHINJI MASUDA},
  title = {Adenosine diphosphate moiety does not participate in structural changes for the signaling state in the sensor of blue-light using FAD domain of AppA},
  journal = {FEBS Letters},
  year = 2005,
}

@article{CTT100757071,
  author = {SHINJI MASUDA},
  title = {Adenosine diphosphate moiety does not participate in structural changes for the signaling state in the sensor of blue-light using FAD domain of AppA.},
  journal = {FEBS Lett. 579, 4329-4332.},
  year = 2005,
}

@article{CTT100757072,
  author = {Masuda, S. and Ono, T.-A. and SHINJI MASUDA},
  title = {Adenylyl cyclase activity of Cya1 from the cyanobacterium synechocystis sp. strain PCC 6803 is inhibited by bicarbonate},
  journal = {Journal of Bacteriology},
  year = 2005,
}

@article{CTT100757073,
  author = {SHINJI MASUDA},
  title = {Adenylyl cycles activity of Cya1 from the cyanobacterium Synechocystis sp. PCC 6803 is inhibited by bicarbonate.},
  journal = {J. Bacteriol. 187, 5032-5035.},
  year = 2005,
}

@article{CTT100757074,
  author = {Unno, M. and Sano, R. and Masuda, S. and Ono, T.-A. and Yamauchi, S. and SHINJI MASUDA},
  title = {Light-induced structural changes in the active site of the BLUF domain in AppA by Raman spectroscopy},
  journal = {Journal of Physical Chemistry B},
  year = 2005,
}

@article{CTT100757075,
  author = {SHINJI MASUDA},
  title = {Light-induced structural changes in the active site of the BLUF domain in AppA by Raman spectroscopy.},
  journal = {J. Phys. Chem. B 109, 12620-12626.},
  year = 2005,
}

@article{CTT100757076,
  author = {Masuda, S. and Hasegawa, K. and Ono, T.-A. and SHINJI MASUDA},
  title = {Light-induced structural changes of apoprotein and chromophore in the sensor of blue light using FAD (BLUF) domain of AppA for a signaling state},
  journal = {Biochemistry},
  year = 2005,
}

@article{CTT100757077,
  author = {SHINJI MASUDA},
  title = {Light-induced structural changes of apoprotein and chromophore in the sensor of blue light using FAD (BLUF) domain of AppA for a signaling state.},
  journal = {Biochemistry 44, 1215-1224.},
  year = 2005,
}

@article{CTT100757080,
  author = {Hasegawa, K. and Masuda, S. and Ono, T.-A. and SHINJI MASUDA},
  title = {Spectroscopic analysis of the dark relaxation process of a photocycle in a sensor of blue light using FAD (BLUF) protein Slr1694 of the cyanobacterium Synechocystis sp. PCC6803},
  journal = {Plant and Cell Physiology},
  year = 2005,
}

@article{CTT100757081,
  author = {SHINJI MASUDA},
  title = {Spectroscopic analysis of the dark relaxation process of a photocycle in a sensor of blue-light using FAD (BLUF) protein Slr1694 of cyanobacterium Synechocystis sp. PCC 6803.},
  journal = {Plant Cell Physiol. 46, 136-146.},
  year = 2005,
}

@article{CTT100757082,
  author = {Anderson, S. and Dragnea, V. and Masuda, S. and Ybe, J. and Moffat, K. and Bauer, C. and SHINJI MASUDA},
  title = {Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides},
  journal = {Biochemistry},
  year = 2005,
}

@article{CTT100757083,
  author = {SHINJI MASUDA},
  title = {Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides.},
  journal = {Biochemistry 44, 7998-8005.},
  year = 2005,
}

@article{CTT100757085,
  author = {SHINJI MASUDA},
  title = {Triptophan at position 104 is involved in transforming light signal into changes of β-sheet structure for the signaling state in the BLUF domain of AppA.},
  journal = {Plant Cell Physiol. 46, 1894-1901.},
  year = 2005,
}

@article{CTT100757086,
  author = {Masuda, S. and Hasegawa, K. and Ono, T.-A. and SHINJI MASUDA},
  title = {Tryptophan at position 104 is involved in transforming light signal into changes of β-sheet structure for the signaling state in the BLUF domain of AppA},
  journal = {Plant and Cell Physiology},
  year = 2005,
}

@article{CTT100541167,
  author = {Masuda, S. and Hasegawa, K. and Ono, T.},
  title = {Tryptophan at position 104 is involved in transforming light signal into changes of beta-sheet structure for the signalling state in the BLUF domain of AppA},
  journal = {Plant Cell Physiol},
  year = 2005,
}

@article{CTT100540468,
  author = {Masuda, S. and Hasegawa, K. and Ono, T.},
  title = {Light-induced structural changes of apoprotein and chromophore in the sensor of blue light using FAD (BLUF) domain of AppA for a signaling state.},
  journal = {Biochemistry},
  year = 2005,
}

@article{CTT100391431,
  author = {Hasegawa, K. and Masuda, S. and Ono, T.},
  title = {Spectroscopic analysis of the dark relaxation process of a photocycle in a sensor of blue-light using FAD (BLUF) protein Slr1694 of cyanobacterium Synechocystis sp. PCC 6803.},
  journal = {Plant Cell Physiol.},
  year = 2005,
}

@article{CTT100757088,
  author = {Masuda, S. and Ono, T.-A. and SHINJI MASUDA},
  title = {Biochemical characterization of the major adenylyl cyclase, Cya1, in the cyanobacterium Synechocystis sp. PCC 6803},
  journal = {FEBS Letters},
  year = 2004,
}

@article{CTT100500942,
  author = {Masuda, S. and Hasegawa, K. and Ishii, A. and Ono, T.},
  title = {Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of Synechocystis sp. PCC6803.},
  journal = {Biochemistry},
  year = 2004,
}

@article{CTT100757096,
  author = {SHINJI MASUDA},
  title = {Structural intermediate in the photocycle of a BLUF (sensor of blue-light using FAD) protein Slr1694 in a cyanobacterium Synechocystis sp. PCC 6803.},
  journal = {Biochemistry 43, 14979-14986.},
  year = 2004,
}

@article{CTT100757095,
  author = {Hasegawa, K. and Masuda, S. and Ono, T.-A. and SHINJI MASUDA},
  title = {Structural intermediate in the photocycle of a BLUF (sensor of blue light using FAD) protein Slr1694 in a cyanobacterium Synechocystis sp. PCC6803},
  journal = {Biochemistry},
  year = 2004,
}

@article{CTT100757094,
  author = {Tsukatani, Y. and Matsuura, K. and Masuda, S. and Shimada, K. and Hiraishi, A. and Nagashima, K.V.P. and SHINJI MASUDA},
  title = {Phylogenetic distribution of unusual triheme to tetraheme cytochrome subunit in the reaction center complex of purple photosynthetic bacteria},
  journal = {Photosynthesis Research},
  year = 2004,
}

@article{CTT100500943,
  author = {Masuda, S. and Ono, T.},
  title = { Biochemical characterization of the major adenylyl cyclase, Cya1, in the cyanobacterium Synechocystis sp. PCC 6803.},
  journal = {FEBS Lett.},
  year = 2004,
}

@article{CTT100757089,
  author = {Masuda, S. and Hasegawa, K. and Ishii, A. and Ono, T.-A. and SHINJI MASUDA},
  title = {Light-Induced Structural Changes in a Putative Blue-Light Receptor with a Novel FAD Binding Fold Sensor of Blue-Light Using FAD (BLUF); Slr1694 of Synechocystis sp. PCC6803},
  journal = {Biochemistry},
  year = 2004,
}

@article{CTT100757093,
  author = {SHINJI MASUDA},
  title = {Phylogenetic distribution of unusual triheme to tetraheme cytochrome subunit in the reaction center complex of purple bacteria.},
  journal = {Photosynth. Res. 79: 83-91.},
  year = 2004,
}

@article{CTT100757087,
  author = {SHINJI MASUDA},
  title = {Biochemical characterization of the major adenylyl cyclase, Cya1, in a cyanobacterium Synechocystis sp. PCC 6803.},
  journal = {FEBS Lett. 577, 255-258.},
  year = 2004,
}

@article{CTT100757092,
  author = {SHINJI MASUDA},
  title = {Null mutation of HvrA compensates for loss of an essential relA/spoT-like gene in Rhodobacter capsulatus.},
  journal = {J. Bacteriol. 186: 235-239.},
  year = 2004,
}

@article{CTT100506227,
  author = {Hasegawa, K. and Masuda, S. and Ono, T.},
  title = {Structural intermediate in the photocycle of a BLUF (sensor of blue light using FAD) protein Slr1694 in a Cyanobacterium Synechocystis sp. PCC6803},
  journal = {Biochemistry},
  year = 2004,
}

@article{CTT100757090,
  author = {SHINJI MASUDA},
  title = {Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of Synechocystis sp. PCC6803.},
  journal = {Biochemistry 43: 5304-5313.},
  year = 2004,
}

@article{CTT100757091,
  author = {Masuda, S. and Bauer, C.E. and SHINJI MASUDA},
  title = {Null Mutation of HvrA Compensates for Loss of an Essential relA/spoT-Like Gene in Rhodobacter capsulatus},
  journal = {Journal of Bacteriology},
  year = 2004,
}

@article{CTT100500940,
  author = {Tsukatani, Y. and Matsuura, K. and Masuda S. and Shimada, K. and Hiraishi, A. and Nagashima, K.V.P.},
  title = {Phylogenetic distribution of unusual triheme to tetraheme cytochrome subunit in the reaction center complex of purple bacteria.},
  journal = {Photosynth. Res.},
  year = 2004,
}

@article{CTT100500941,
  author = {Masuda, S. and Bauer C. E.},
  title = { Null mutation of HvrA compensates for loss of an essential relA/spoT-like gene in Rhodobacter capsulatus.},
  journal = { J. Bacteriol.},
  year = 2004,
}

@article{CTT100539543,
  author = {Bauer, C.E. and Elsen, S. and Swem, L.R. and Swem, D.L. and Masuda, S.},
  title = { Redox and light regulation of gene expression in photosynthetic prokaryotes.},
  journal = {Philos. Trans. R. Soc. Lond. B. Biol. Sci.},
  year = 2003,
}

@article{CTT100757101,
  author = {SHINJI MASUDA},
  title = {Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: A novel photocycle involving flavin stacking with an aromatic amino acid.},
  journal = {Biochemisty 42: 6726-6734.},
  year = 2003,
}

@article{CTT100500938,
  author = {Kraft, B. J. and Masuda, S. and Kikuchi, J. and Dragnea, V. and Tollin, G. and Zaleski, J. M. and Bauer, C. E.},
  title = {Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: A novel photocycle involving flavin stacking with an aromatic amino acid.},
  journal = {Biochemistry},
  year = 2003,
}

@article{CTT100500939,
  author = {Swem, L. R. and Kraft, B. J. and Swem, D. L. and Setterdahl, A. T. and Masuda, S. and Knaff, D. B. and Zaleski, J. M. and Bauer C. E.},
  title = { Signal transduction by the global regulator RegB is mediated by a redox-active cysteine.},
  journal = {EMBO J.},
  year = 2003,
}

@article{CTT100757100,
  author = {Kraft, B.J. and Masuda, S. and Kikuchi, J. and Dragnea, V. and Tollin, G. and Zaleski, J.M. and Bauer, C.E. and SHINJI MASUDA},
  title = {Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: A novel photocycle involving flavin stacking with an aromatic amino acid},
  journal = {Biochemistry},
  year = 2003,
}

@article{CTT100757099,
  author = {SHINJI MASUDA},
  title = {Signal transduction by the global regulator RegB is mediated by a redox-active cysteine.},
  journal = {EMBO J. 22: 4699-4708.},
  year = 2003,
}

@article{CTT100757097,
  author = {Bauer, C. and Elsen, S. and Swem, L.R. and Swem, D.L. and Masuda, S. and Blankenship, R.E. and Allen, J.F. and Martin, W. and SHINJI MASUDA},
  title = {Redox and light regulation of gene expression in photosynthetic prokaryotes},
  journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
  year = 2003,
}

@article{CTT100757098,
  author = {Swem, L.R. and Kraft, B.J. and Swem, D.L. and Setterdahl, A.T. and Masuda, S. and Knaff, D.B. and Zaleski, J.M. and Bauer, C.E. and SHINJI MASUDA},
  title = {Signal transduction by the global regulator RegB is mediated by a redox-active cysteine},
  journal = {EMBO Journal},
  year = 2003,
}

@article{CTT100500934,
  author = {Masuda, S. and Dong, C. and Swem, D. and Setterdahl, A.T. and Knaff, D. and Bauer C.E.},
  title = {Repression of photosynthesis gene expression by formation of a disulfide bond in CrtJ.},
  journal = {Proc. Natl. Acad. Sci. USA.},
  year = 2002,
}

@article{CTT100757105,
  author = {SHINJI MASUDA},
  title = {Mutational analyses of the photosynthetic reaction-center-bound triheme cytochrome subunit and cytochrome c2 in the purple bacterium, Rhodovulum sulfidophilum.},
  journal = {Biochemistry 41: 11211-11217.},
  year = 2002,
}

@article{CTT100757106,
  author = {Masuda, S. and Dong, C. and Swem, D. and Setterdahl, A.T. and Knaff, D.B. and Bauer, C.E. and SHINJI MASUDA},
  title = {Repression of photosynthesis gene expression by formation of a disulfide bond in CrtJ},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = 2002,
}

@article{CTT100757107,
  author = {SHINJI MASUDA},
  title = {Repression of photosynthesis gene expression by formation of a disulfide bond in CrtJ.},
  journal = {Proc. Natl. Acad. Sci. USA. 99: 7078-7083.},
  year = 2002,
}

@article{CTT100539542,
  author = {Masuda, S. and Bauer, C.E.},
  title = {AppA is a blue-light photoreceptor that anti-represses photosynthesis gene expression in Rhodobacter sphaeroides.},
  journal = {Cell},
  year = 2002,
}

@article{CTT100500935,
  author = {Masuda, S. and Tsukatani, Y. and Kimura, Y. and Nagashima, K.V.P. and Shimada, K. and Matsuura, K.},
  title = {Mutational analyses of the photosynthetic reaction-center-bound triheme cytochrome subunit and cytochrome c2 in the purple bacterium, Rhodovulum sulfidophilum.},
  journal = {Biochemistry},
  year = 2002,
}

@article{CTT100757104,
  author = {Masuda, S. and Tsukatani, Y. and Kimura, Y. and Nagashima, K.V.P. and Shimada, K. and Matsuura, K. and SHINJI MASUDA},
  title = {Mutational analyses of the photosynthetic reaction center-bound triheme cytochrome subunit and cytochrome c2 in the purple bacterium Rhodovulum sulfidophilum},
  journal = {Biochemistry},
  year = 2002,
}

@article{CTT100757102,
  author = {Masuda, S. and Bauer, C.E. and SHINJI MASUDA},
  title = {AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides},
  journal = {Cell},
  year = 2002,
}

@article{CTT100757103,
  author = {SHINJI MASUDA},
  title = {AppA is a blue-light photoreceptor that anti-represses photosynthesis gene expression in Rhodobacter sphaeroides.},
  journal = {Cell 110: 613-623.},
  year = 2002,
}

@article{CTT100757109,
  author = {SHINJI MASUDA},
  title = {In vitro and in vivo electron transfer to the triheme cytochrome subunit bound to the photosynthetic reaction center complex in the purple bacterium Rhodovulum sulfidophilum.},
  journal = {Biochim. Biophy. Acta 1506: 23-30.},
  year = 2001,
}

@article{CTT100500932,
  author = {Yoshida, M. and Masuda, S. and Nagashima, K.V.P. and Vermeglio, A. and Shimada, K. and Matsuura, K.},
  title = {In vitro and in vivo electron transfer to the triheme cytochrome subunit bound to the photosynthetic reaction center complex in the purple bacterium Rhodovulum sulfidophilum.},
  journal = {Biochim. Biophy. Acta},
  year = 2001,
}

@article{CTT100757108,
  author = {Yoshida, M. and Masuda, S. and Nagashima, K.V.P. and Verméglio, A. and Shimada, K. and Matsuura, K. and SHINJI MASUDA},
  title = {In vitro and in vivo electron transfer to the triheme cytochrome subunit bound to the photosynthetic reaction center complex in the purple bacterium Rhodovulum sulfidophilum},
  journal = {Biochimica et Biophysica Acta - Bioenergetics},
  year = 2001,
}

@article{CTT100757111,
  author = {SHINJI MASUDA},
  title = {Transcriptional control of expression of genes for photosynthetic reaction center and light-harvesting proteins in the purple bacterium Rhodovulum sulfidophilum.},
  journal = {J. Bacteriol. 182: 2778-2786.},
  year = 2000,
}

@article{CTT100500931,
  author = {Masuda, S. and Nagashima, K.V.P. and Shimada, K. and Matsuura, K.},
  title = {Transcriptional control of expression of genes for photosynthetic reaction center and light-harvesting proteins in the purple bacterium Rhodovulum sulfidophilum.},
  journal = {J. Bacteriol.},
  year = 2000,
}

@article{CTT100757110,
  author = {Masuda, S. and Nagashima, K.V.P. and Shimada, K. and Matsuura, K. and SHINJI MASUDA},
  title = {Transcriptional control of expression of genes for photosynthetic reaction center and light-harvesting proteins in the purple bacterium Rhodovulum sulfidophilum},
  journal = {Journal of Bacteriology},
  year = 2000,
}

@article{CTT100757115,
  author = {SHINJI MASUDA},
  title = {Structural and functional analyses of photosynthetic regulatory genes regA and regB from Rhodovulum sulfidophilum, Roseobacter denitrificans, and Rhodobacter capsulatus.},
  journal = {J. Bacteriol. 181: 4205-4215.},
  year = 1999,
}

@article{CTT100757113,
  author = {SHINJI MASUDA},
  title = {A new cytochrome subunit bound to the photosynthetic reaction center in the purple bacterium, Rhodovulum sulfidophilum.},
  journal = {J. Biol. Chem. 274: 10795-10801.},
  year = 1999,
}

@article{CTT100757112,
  author = {Masuda, S. and Yoshida, M. and Nagashima, K.V.P. and Shimada, K. and Matsuura, K. and SHINJI MASUDA},
  title = {A new cytochrome subunit bound to the photosynthetic reaction center in the purple bacterium, Rhodovulum sulfidophilum},
  journal = {Journal of Biological Chemistry},
  year = 1999,
}

@article{CTT100500930,
  author = {Masuda, S. and Matsumoto, Y. and Nagashima, K.V.P. and Shimada, K. and Inoue, K. and Bauer, C.E. and Matsuura, K.},
  title = { Structural and functional analyses of photosynthetic regulatory genes regA and regB from Rhodovulum sulfidophilum, Roseobacter denitrificans, and Rhodobacter capsulatus.},
  journal = {J. Bacteriol.},
  year = 1999,
}

@article{CTT100500929,
  author = {Masuda, S. and Yoshida, M. and Nagashima, K.V.P. and Shimada, K. and Matsuura, K.},
  title = { A new cytochrome subunit bound to the photosynthetic reaction center in the purple bacterium, Rhodovulum sulfidophilum.},
  journal = {J. Biol. Chem.},
  year = 1999,
}

@article{CTT100757114,
  author = {Masuda, S. and Matsumoto, Y. and Nagashima, K.V.P. and Shimada, K. and Inoue, K. and Bauer, C.E. and Matsuura, K. and SHINJI MASUDA},
  title = {Structural and functional analyses of photosynthetic regulatory genes regA and regB from Rhodovulum sulfidophilum, Roseobacter denitrificans, and Rhodobacter capsulatus},
  journal = {Journal of Bacteriology},
  year = 1999,
}

@article{CTT100759138,
  author = {Oshima, T. and Aiba, H. and Baba, T. and Fujita, K. and Hayashi, K. and Honjo, A. and Ikemoto, K. and Inada, T. and Itoh, T. and Kajihara, M. and Kanai, K. and Kashimoto, K. and Kimura, S. and Kitagawa, M. and Makino, K. and Masuda, S. and Miki, T. and Mizobuchi, K. and Mori, H. and Motomura, K. and Nakamura, Y. and Nashimoto, H. and Nishio, Y. and Saito, N. and Horiuchi, T. and SHINJI MASUDA},
  title = {A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map (supplement).},
  journal = {DNA research : an international journal for rapid publication of reports on genes and genomes},
  year = 1996,
}

@article{CTT100757118,
  author = {Oshima, T. and Aiba, H. and Baba, T. and Fujita, K. and Hayashi, K. and Honjo, A. and Ikemoto, K. and Inada, T. and Itoh, T. and Kajihara, M. and Kanai, K. and Kashimoto, K. and Kimura, S. and Kitagawa, M. and Makino, K. and Masuda, S. and Miki, T. and Mizobuchi, K. and Mori, H. and Motomura, K. and Nakamura, Y. and Nashimoto, H. and Nishio, Y. and Saito, N. and Horiuchi, T. and SHINJI MASUDA},
  title = {A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map (supplement).},
  journal = {DNA research : an international journal for rapid publication of reports on genes and genomes},
  year = 1996,
}

@inproceedings{CTT100923318,
  author = {堀 祐輔 and 堀井 辰衛 and 増田 真二 and 藤枝 俊宣},
  title = {植物葉面に貼付可能な透明超薄膜電極の開発と生体電位応答の計測},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100783324,
  author = {増田真二},
  title = {緑色硫黄細菌の光合成反応中心コアアンテナ系におけるカロテノイド配糖体エステルによる超高速消光},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100780728,
  author = {SHINJI MASUDA},
  title = {Physiological and genetic characterization of a gene for the stringent response in Chlamydomonas reinharditii},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780729,
  author = {SHINJI MASUDA},
  title = {Fluctuating-Light-Acclimation Protein 1 (FLAP1): Genetic-based characterization of a new factor contributing to proton gradient regulation across Arabidopsis thylakoid membranes},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780720,
  author = {SHINJI MASUDA},
  title = {Glycolipid and chlorophyll a biosynthesis are required for heterologous assembly of the type-I photochemical reaction center in purple bacteria},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780727,
  author = {SHINJI MASUDA},
  title = {Role of a new gene for the stringent response in Chlamydomonas reinharditii},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780726,
  author = {SHINJI MASUDA},
  title = {Impact of the stringent response for controlling photosynthesis and chloroplast function in photosynthetic microorganisms},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780723,
  author = {SHINJI MASUDA},
  title = {Glycolipid and chlorophyll a biosynthesis are required for heterologous assembly of the type-I photochemical reaction center in purple bacteria},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780722,
  author = {SHINJI MASUDA},
  title = {Intracellular signaling by PixD and PixE controlling phototaxis in the cyanobacterium Synechocystis sp. PCC6803},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780725,
  author = {SHINJI MASUDA},
  title = {Persulfide-responsive transcriptional repressor SqrR regulates sulfide-dependent photosynthesis},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100715047,
  author = {SHINJI MASUDA},
  title = {Significance of light-induced electron transfer between a flavin molecule and an amino-acid side chain for controlling phototaxis in cyanobacteria},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100715059,
  author = {SHINJI MASUDA},
  title = {BLUF: the highly conserved blue-light photoreceptor controlling a wide variety of physiological activities in microorganisms},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100715052,
  author = {SHINJI MASUDA},
  title = {Significance of dynamic interaction between the BLUF photoreceptor PixD and its downstream factor PixE for controlling phototaxis in cyanobacteria},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715055,
  author = {Shinji Masuda},
  title = {Molecular mechanisms of blue-light sensing by BLUF photoreceptors},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100790138,
  author = {Shinji Masuda and Yuki Nakatani and Shukun Ren and Mikiko Tanaka},
  title = {“PICCORO”-a novel technique for manipulating the activity of transcription factors with blue light.},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100757033,
  author = {Unno, M. and Kikuchi, S. and Masuda, S. and SHINJI MASUDA},
  title = {Structural refinement of a key tryptophan residue in the BLUF photoreceptor AppA by ultraviolet resonance Raman spectroscopy},
  booktitle = {AIP Conference Proceedings},
  year = 2010,
}

@misc{CTT100806063,
  author = {SHINJI MASUDA},
  title = {The Stringent Response in Phototrophs},
  year = 2012,
}

@misc{CTT100805294,
  author = {増田真二},
  title = {光合成細菌の光に依存したバイオフィルム形成機構},
  year = 2011,
}

@misc{CTT100805621,
  author = {SHINJI MASUDA},
  title = {2SA-04 What should we learn from BLUF proteins? : Light perception and signal transduction(2SA Photobiophysics promoted by young scientists,The 49th Annual Meeting of the Biophysical Society of Japan)},
  year = 2011,
}

@misc{CTT100805282,
  author = {増田真二},
  title = {被子植物のプラスチドで形成されるプロラメラボディに関する新知見},
  year = 2010,
}

@misc{CTT100541129,
  author = {増田 真二},
  title = {フラビンを発色団とする新規青色光受容体BLUFタンパク質の光反応と機能},
  year = 2005,
}

@misc{CTT100595494,
  author = {SHINJI MASUDA},
  title = {Structure and oxygen regulation of photosynthesis genes in purple bacteria},
  year = 2000,
}

@misc{CTT100908582,
  author = {増田真二 and 今村　壮輔 and 高谷　和宏},
  title = {ｐｐＧｐｐ富化生物の製造方法及び生物},
  howpublished = {公開特許},
  year = 2023,
  month  = {},
  note   = {特願2022-069028(2022/04/19), 特開2023-158948(2023/10/31)}
}


@misc{CTT100779828,
  author = {増田真二 and 清水隆之},
  title = {活性イオウ分子種に応答して遺伝子発現を制御するタンパク質},
  howpublished = {公開特許},
  year = 2018,
  month  = {},
  note   = {特願2017-015348(2017/01/31), 特開2018-121557(2018/08/09)}
}


@misc{CTT100669119,
  author = {増田真二 and 田中幹子 and 中谷友紀 and 堀田 淑坤},
  title = {転写因子の機能制御方法},
  howpublished = {公開特許},
  year = 2013,
  month  = {Dec.},
  note   = {特願2012-117619(2012/05/23), 特開2013-243940(2013/12/09)}
}


@misc{CTT100647511,
  author = {増田真二 and 前川　未来翔},
  title = {貧栄養耐性植物の作出方法},
  howpublished = {公開特許},
  year = 2012,
  month  = {},
  note   = {特願2011-049320(2011/03/07), 特開2012-183040(2012/09/27)}
}




@phdthesis{CTT100595494,
  author = {SHINJI MASUDA},
  title = {Structure and oxygen regulation of photosynthesis genes in purple bacteria},
  school = {東京都立大学},
  year = 2000,
}