@article{CTT100631867,
  author = {Sarel J. Fleishman and Timothy A. Whitehead and Eva-Maria Strauch and Jacob E. Corn and Sanbo Qin and Huan-Xiang Zhou and Julie C. Mitchell and Omar N. A. Demerdash and Mayuko Takeda-Shitaka and Genki Terashi and Iain H. Moal and Xiaofan Li and Paul A. Bates and Martin Zacharias and Hahnbeom Park and Jun-su Ko and Hasup Lee and Chaok Seok and Thomas Bourquard and Julie Bernauer and Anne Poupon and Jerome Aze and Seren Soner and Sefik Kerem Oval. and Pemra Ozbek and Nir Ben Tal and Turkan Haliloglu and Howook Hwang and Thom Vreven and Brian G. Pierce and Zhiping Weng and Laura Perez-Cano and Carles Pons and Juan Fernandez-Recio and Fan Jiang and Feng Yang and Xinqi Gong and Libin Cao and Xianjin Xu and Bin Liu and Panwen Wang and Chunhua Li and Cunxin Wang and Charles H. Robert and Mainak Guharoy and Shiyong Liu and Yangyu Huang and Lin Li and Dachuan Guo and Ying Chen and Yi Xiao and Nir London and Zohar Itzhaki and Ora Schueler-Furman and Yuval Inbar and Vladimir Patapov and Mati Cohen and Gideon Schreiber and Yuko Tsuchiya and Eiji Kanamori and Daron M. Standley and Haruki Nakamura and Kengo Kinoshita and Camden M. Driggers and Robert G. Hall and Jessica L. Morgan and Victor L. Hsu and Jian Zhan and Yuedong Yang and Yaoqi Zhou and Panagiotis L. Kastritis and Alexandre M. J. J. Bonvin and Weiyi Zhang and Carlos J. Camacho and Krishna P. Kilambi and Aroop Sircar and Jeffrey J. Gray and Masahito Ohue and Nobuyuki Uchikoga and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama and Raed Khashan and Stephen Bush and Denis Fouches and Alexander Tropsha and Juan Esquivel-Rodriguez and Daisuke Kihara and P. Benjamin Stranges and Ron Jacak and Brian Kuhlman and Sheng-You Huang and Xiaoqin Zou and Shoshana J. Wodak and Joel Janin and David Baker},
  title = {Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology},
  journal = {Journal of Molecular Biology},
  year = 2011,
}

@article{CTT100619311,
  author = {Matsuyuki Shirota and Takashi Ishida and Kengo Kinoshita},
  title = {Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states},
  journal = {Proteins},
  year = 2011,
}

@article{CTT100570670,
  author = {Takeshi Obayashi and Shinpei Hayashi and Motoshi Saeki and Hiroyuki Ohta and Kengo Kinoshita},
  title = {ATTED-II provides coexpressed gene networks for Arabidopsis},
  journal = {Nucleic Acids Research},
  year = 2009,
}

@article{CTT100619305,
  author = {Miho Higurashi and Takashi Ishida and Kengo},
  title = {PiSite: a database of protein interaction sites using multiple binding states in the PDB.},
  journal = {Nucleic Acid Research},
  year = 2009,
}

@article{CTT100619306,
  author = {Matsuyuki Shirota and Takashi Ishida and Kengo Kinoshita},
  title = {Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials},
  journal = {Protein science},
  year = 2009,
}

@article{CTT100548106,
  author = {Takeshi Obayashi and Shinpei Hayashi and Masayuki Shibaoka and Motoshi Saeki and Hiroyuki Ohta and Kengo Kinoshita},
  title = {COXPRESdb: a database of coexpressed gene networks in mammals},
  journal = {Nucleic Acids Research},
  year = 2008,
}

@article{CTT100548098,
  author = {Takeshi Obayashi and Kengo Kinoshita and Kenta Nakai and Masayuki Shibaoka and Shinpei Hayashi and Motoshi Saeki and Daisuke Shibata and Kazuki Saito and Hiroyuki Ohta},
  title = {ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis},
  journal = {Nucleic Acids Research},
  year = 2007,
}

@inproceedings{CTT100600381,
  author = {Matsuyuki Shirota and Takashi Ishida and Kengo Kinoshita},
  title = {Development of a New Meta-Score for Protein Structure Prediction from Seven All-Atom Distance Dependent Potentials Using Support Vector Regression},
  booktitle = {Genome Informatics},
  year = 2009,
}

@inproceedings{CTT100600486,
  author = {Takashi Ishida and Kengo Kinoshita},
  title = {Development of prediction servers for protein disorder},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}