@book{CTT100691765,
  author = {半田宏 and 伊藤武彦 and 岩崎博史 and 岡田典弘 and 岸本健雄 and 工藤明 and 白髭克彦 and 田中幹子 and 徳永万喜洋 and 広瀬茂久 and 村上聡 and 菊池韶彦},
  title = {ハートウェル遺伝学-遺伝子、ゲノム、そして生命システムへ-},
  publisher = {メディカルサイエンスインターナショナル},
  year = 2010,
}

@article{CTT100908340,
  author = {Minoru Moriyama and Yudai Nishide and Takema Fukatsu and Minoru Moriyama and Yudai Nishide and Atsushi Toyoda and Takehiko Itoh and Takema Fukatsu},
  title = {Complete genomes of mutualistic bacterial co-symbionts "Candidatus Sulcia muelleri" and "Candidatus Nasuia deltocephalinicola" of the rice green leafhopper Nephotettix cincticeps},
  journal = {Microbiol Resour Announs},
  year = 2023,
}

@article{CTT100908285,
  author = {Kohei Nagao and Yoshiki Tanaka and Rei Kajitani and Atsushi Toyoda and Takehiko Itoh and Souichirou Kubota and Yuji Goto},
  title = {Bioinformatic and fine-scale chromosomal mapping reveal the nature and evolution of eliminated chromosomes in the Japanese hagfish, Eptatretus burgeri, through analysis of repetitive DNA families},
  journal = {PLoS One},
  year = 2023,
}

@article{CTT100899178,
  author = {Shun Ouchi and Rei Kajitani and Takehiko Itoh},
  title = {GreenHill: a de novo chromosome‑level scaffolding and phasing tool using Hi‑C},
  journal = {Genome Biology},
  year = 2023,
}

@article{CTT100899184,
  author = {Hiroyuki Tanaka and Tatsuki Hori and Shohei Yamamoto and Atsushi Toyoda and Kentaro Yano and Kyoko Yamane and Takehiko Itoh},
  title = {Haplotype-resolved chromosomallevel assembly of wasabi (Eutrema japonicum) genome},
  journal = {Scientific Data},
  year = 2023,
}

@article{CTT100899188,
  author = {Takahiro Yamabe and Rei Kajitani and Atsushi Toyoda and Takehiko Itoh},
  title = {Chromosomal-level genome assembly of the coffee bee hawk moth reveals the evolution of chromosomes and the molecular basis of distinct phenotypes},
  journal = {Genome Biology and Evolution},
  year = 2023,
}

@article{CTT100865846,
  author = {Masatoshi Miyakoshi and Haruna Okayama and Maxence Lejars and Takeshi Kanda and Yuki Tanaka and Kaori Itaya and Miki Okuno and Takehiko Itoh and Noritaka Iwai and Masaaki Wachi},
  title = {Mining RNA-seq data reveals the massive regulon of GcvB small RNA and its physiological significance in maintaining amino acid homeostasis in <i>Escherichia coli</i>},
  journal = {Mol. Microbiol.},
  year = 2022,
}

@article{CTT100880733,
  author = {Mizuki Horoiwa and Takashi Nakamura and Hideaki Yuasa and Rei Kajitani and Yosuke Ameda and Tetsuro Sasaki and Hiroki Taninaka and Taisei Kikuchi and Takehisa  Yamakita and Toyoda Atsushi and Takehiko Itoh and Nina Yasuda},
  title = {Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions},
  journal = {Frontiers in Marine Science},
  year = 2022,
}

@article{CTT100877593,
  author = {Maierdan Palihati and Hideo Tsubouchi and Bilge Argunhan and Rei Kajitani and Omirgul Bakenova and Yong‑Woon Han and Yasuto Murayama and Takehiko Itoh and Hiroshi Iwasaki},
  title = {Homology length dictates the requirement for Rad51 and Rad52 in gene targeting in the Basidiomycota yeast Naganishia liquefaciens},
  journal = {Current Genetics},
  year = 2021,
}

@article{CTT100863097,
  author = {Michiharu Nakano and Hideki Hirakawa and Eigo Fukai and Atsushi Toyoda and Rei Kajitani and Yohei Minakuchi and Takehiko Itoh and Yohei Higuchi and Toshiaki Kozuka and Hidemasa Bono and Kenta Shirasawa and Ippei Shiraiwa and Katsuhiko Sumitomo and Tamotsu Hisamatsu and Michio Shibata and Sachiko Isobe and Kenji Taniguchi and Makoto Kusaba},
  title = {A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum},
  journal = {Communications Biology},
  year = 2021,
}

@article{CTT100863094,
  author = {Rei Kajitani and Hideki Noguchi and Yasuhiro Gotoh and Yoshitoshi Ogura and Dai Yoshimura and Miki Okuno and Atsushi Toyoda and Tomomi Kuwahara and Tetsuya Hayashi and Takehiko Itoh},
  title = {MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features},
  journal = {Nucleic Acids Research},
  year = 2021,
}

@article{CTT100863086,
  author = {Hideaki Yuasa and Rei Kajitani and Yuta Nakamura and Kazuki Takahashi and Miki Okuno and Fumiya Kobayashi and Takahiro Shinoda and Atsushi Toyoda and Yutaka Suzuki and Nalinee Thongtham and Zac Forsman and Omri Bronstein and Davide Seveso and Enrico Montalbetti and Coralie Taquet and Gal Eyal and Nina Yasuda and Takehiko Itoh},
  title = {Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis},
  journal = {DNA Research},
  year = 2021,
}

@article{CTT100863084,
  author = {Issei Nakazato and Miki Okuno and Hiroshi Yamamoto and Yoshiko Tamura and Takehiko Itoh and Toshiharu Shikanai and Hideki Takanashi and Nobuhiro Tsutsumi and Shin-Ichi Arimura},
  title = {Targeted base editing in the plastid genome of Arabidopsis thaliana},
  journal = {Nature plants},
  year = 2021,
}

@article{CTT100852227,
  author = {Koji Inoue and Yuki Yoshioka and Hiroyuki Tanaka and Azusa Kinjo and Mieko Sassa and Ikuo Ueda and Chuya Shinzato and Atsushi Toyoda and Takehiko Itoh},
  title = {Genomics and Transcriptomics of the green mussel explain the durability of its byssus},
  journal = {Scientific Reports},
  year = 2021,
}

@article{CTT100851956,
  author = {Nakamura, H. and Aibara, M. and Kajitani, R. and Mrosso, HDJ and Mzighani,  SI and Toyoda, A. and Itoh, T. and Okada, N. and Nikaido, M},
  title = {Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation},
  journal = {Molecular Biology and Evolution},
  year = 2021,
}

@article{CTT100846439,
  author = {Kyoko Ishino and Hidetoshi Hasuwa and Jun Yoshimura and Yuka W Iwasaki and Hidenori Nishihara and Naomi M Seki and Takamasa Hirano and Marie Tsuchiya and Hinako Ishizaki and Harumi Masuda and Tae Kuramoto and Kuniaki Saito and Yasubumi Sakakibara and Atsushi Toyoda and Takehiko Itoh and Mikiko C Siomi and Shinichi Morishita and Haruhiko Siomi},
  title = {Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation},
  journal = {Nucleic Acids Research},
  year = 2021,
}

@article{CTT100856442,
  author = {Yong-Woon Han and Rei Kajitani and Hiroya Morimoto and Maierdan Palihati and Yumiko Kurokawa and Rie Ryusui and Bilge Argunhan and Hideo Tsubouchi and Fumiyoshi Abe and Susumu Kajiwara and Hiroshi Iwasaki and Takehiko Itoh},
  title = {Draft Genome Sequence of Naganishia liquefaciens Strain N6, Isolated from the Japan Trench.},
  journal = {Microbiology Resource Announcements},
  year = 2020,
}

@article{CTT100852230,
  author = {Miki Okuno and Shuntaro Miyamoto and Takehiko Itoh and Masahide Seki and Yutaka Suzuki and Shusei Mizushima and Asato Kuroiwa},
  title = {A Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica.},
  journal = {Scientific Reports},
  year = 2020,
}

@article{CTT100852234,
  author = {Shin-ichi Arimura and Hiroki Ayabe and Hajime Sugaya and Miki Okuno and Yoshiko Tamura and Yu Tsuruta and Yuta Watari and Shungo Yanase and Takaki Yamauchi and Takehiko Itoh and Atsushi Toyoda and Hideki Takanashi and Nobuhiro Tsutsumi},
  title = {Targeted gene disruption of ATP synthases 6-1 and 6-2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs},
  journal = {The Plant Journal},
  year = 2020,
}

@article{CTT100852247,
  author = {Kai Wang and Ryo Tomura and Wei Chen and Miho Kiyooka and Hinako Ishizaki and Tomoyuki Aizu and Yohei Minakuchi and Masahide Seki and Yutaka Suzuki and Tatsuya Omotezako and Ritsuko Suyama and Aki Masunaga and Charles Plessy and Nicholas M. Luscombe and Christelle Dantec and Patrick Lemaire and Takehiko Itoh and Atsushi Toyoda and Hiroki Nishida and Takeshi A. Onuma},
  title = {A genome database for a Japanese population of the larvacean Oikopleura dioica},
  journal = {Development Growth & Differentiation},
  year = 2020,
}

@article{CTT100852239,
  author = {Naohisa Wada and Hideaki Yuasa and Rei Kajitani and Yasuhiro Gotoh and Yoshitoshi Ogura and Dai Yoshimura and Atsushi Toyoda and Sen-Lin Tang and Yukihiro Higashimura and Hugh Sweatman and Zac Forsman and Omri Bronstein and Gal Eyal and Nalinee Thongtham and Takehiko Itoh and Tetsuya Hayashi and Nina Yasuda},
  title = {A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of thorns starfish, in the Indo-Pacifc},
  journal = {Microbiome},
  year = 2020,
}

@article{CTT100832499,
  author = {Takeuchi M. and Kuwahara H. and Murakami T. and Takahashi K. and Kajitani R. and Toyoda A. and Itoh T. and Ohkuma M. and Hongoh Y},
  title = {Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut},
  journal = {The ISME Journal},
  year = 2020,
}

@article{CTT100852372,
  author = {Rei Kajitani and Dai Yoshimura and Yoshitoshi Ogura and Yasuhiro Gotoh and Tetsuya Hayashi and Takehiko Itoh},
  title = {Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error- removal process},
  journal = {DNA Research},
  year = 2020,
}

@article{CTT100852414,
  author = {Keiji Nakamura and Kazunori Murase and Mitsuhiko P. Sato and Atsushi Toyoda and Takehiko Itoh and Jacques Georges Mainil and Denis Piérard and Shuji Yoshino and Keiko Kimata and Junko Isobe and Kazuko Seto and Yoshiki Etoh and Hiroshi Narimatsu and Shioko Saito and Jun Yatsuyanagi and Kenichi Lee and Sunao Iyoda and Makoto Ohnishi and Tadasuke Ooka and Yasuhiro Gotoh and Yoshitoshi Ogura and Tetsuya Hayashi},
  title = {Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28},
  journal = {Microbial Genomics},
  year = 2020,
}

@article{CTT100853168,
  author = {Mitsuhiko P. Sato and Yoshitoshi Ogura and Keiji Nakamura and Ruriko Nishida and Yasuhiro Gotoh and Masahiro Hayashi and Junzo Hisatsune and Motoyuki Sugai and Itoh Takehiko and Tetsuya Hayashi},
  title = {Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes},
  journal = {DNA Research},
  year = 2019,
}

@article{CTT100815920,
  author = {Takayuki Enomoto and Hidefumi Nishida and Tetsuo Iwata and Akito Fujita and Kanako Nakayama and Takahiro Kashiwagi and Yasue Hatanaka and Hiro Kondo and Rei Kajitani and Takehiko Itoh and Makoto Ohmoto and Ichiro Matsumoto and Junji Hirota},
  title = {Bcl11b controls the odorant receptor class choice in mice},
  journal = {Communications Biology},
  year = 2019,
}

@article{CTT100853275,
  author = {Tomohiko Kazama and Miki Okuno and Yuta Watari and Shungo Yanase and Chie Koizuka and Yu Tsuruta and Hajime Sugaya and Atsushi Toyoda and Takehiko Itoh and Nobuhiro Tsutsumi and Kinya Toriyama and Nobuya Koizuka and Shin-ichi Arimura},
  title = {Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing},
  journal = {Nature Plants},
  year = 2019,
}

@article{CTT100853280,
  author = {Dai Yoshimura and Rei Kajitani and Yasuhiro Gotoh and Katsuyuki Katahira and Miki Okuno and Yoshitoshi Ogura and Tetsuya Hayashi and Takehiko Itoh},
  title = {Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP},
  journal = {Microbial Genomics},
  year = 2019,
}

@article{CTT100853289,
  author = {Osamu Sawada and Yasuhiro Gotoh and Takako Taniguchi and Shota Furukawa and Dai Yoshimura and Satomi Sasaki and Haruki Shida and Yoshihiro Kusunoki and Tsuyoshi Yamamura and Ken Furuya and Takehiko Itoh and Tetsuya Horita and Tetsuya Hayashi and Naoaki Misawa},
  title = {Genome Sequencing Verifies Relapsed Infection of  Helicobacter cinaedi},
  journal = {Open Forum Infectious Diseases},
  year = 2019,
}

@article{CTT100853293,
  author = {Rei Kajitani and Dai Yoshimura and Miki Okuno and Yohei Minakuchi and Hiroshi Kagoshima and Asao Fujiyama and Kaoru Kubokawa and Yuji Kohara and Atsushi Toyoda and Takehiko Itoh},
  title = {Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions},
  journal = {Nature Communications},
  year = 2019,
}

@article{CTT100786569,
  author = {Kohei Nishimura and Masataka Komiya and Tetsuya Hori and Takehiko Itoh and Tatsuo Fukagawa},
  title = {3D genomic architecture reveals that neocentromeres associate with heterochromatin regions},
  journal = {J Cell Biol},
  year = 2019,
}

@article{CTT100786570,
  author = {Yoshitoshi Ogura and Kazuko Seto and Yo Morimoto and Keiji Nakamura and Mitsuhiko P. Sato and Yasuhiro Gotoh and Takehiko Itoh and Atsushi Toyoda and Makoto Ohnishi and Tetsuya Hayashi},
  title = {Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a},
  journal = {Emerging infectious diseases},
  year = 2018,
}

@article{CTT100786559,
  author = {Hikoyuu Suzuki and Hidefumi Nishida and Hiro Kondo and Ryota Yoda and Tetsuo Iwata and Kanako Nakayama and Takayuki Enomoto and Jiaqi  Wu and Keiko Moriya-Ito and Masao Miyazaki and Yoshihiro Wakabayashi and Takushi Kishida and Masataka Okabe and Yutaka Suzuki and Takehiko Itoh and Junji Hirota and Masato Nikaido},
  title = {A Single Pheromone Receptor Gene Conserved across 400 My of Vertebrate Evolution},
  journal = {Molecular biology and evolution},
  year = 2018,
}

@article{CTT100786558,
  author = {Toshiya Ando and Takeshi Matsuda and Kumiko Goto and Kimiko Hara and Akinori Ito and Junya Hirata and Joichiro Yatomi and Rei Kajitani and Miki Okuno and Katsushi Yamaguchi and Masaaki Kobayashi and Tomoyuki Takano and Yohei Minakuchi and Masahide Seki and Yutaka Suzuki and Kentaro Yano and Takehiko Itoh and Shuji Shigenobu and Atsushi Toyoda and Teruyuki Niimi},
  title = {Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles},
  journal = {Nature communications},
  year = 2018,
}

@article{CTT100786556,
  author = {Asuka Morikawa and Tomoatsu Hayashi and Mana Kobayashi and Yuki Kato and Katsuhiko Shirahige and Takehiko Itoh and Mitsuyoshi Urashima and Aikou Okamoto and Tetsu Akiyama},
  title = {Somatic copy number alterations have prognostic impact in patients with ovarian clear cell carcinoma},
  journal = {Oncology reports},
  year = 2018,
}

@article{CTT100786554,
  author = {Takuro Iijima and Rei Kajitani and Shinya Komata and Chung-Ping Lin and Teiji Sota and Takehiko Itoh and Haruhiko Fujiwara},
  title = {Parallel evolution of Batesian mimicry supergene in two Papilio butterflies, P. polytes and P. memnon},
  journal = {Science advances},
  year = 2018,
}

@article{CTT100786557,
  author = {Makoto KONISHI and Norihisa SHINDO and Masataka KOMIYA and Kozo TANAKA and Takehiko ITOH and Toru HIROTA},
  title = {Quantitative analyses of the metaphase-to-anaphase transition reveal differential kinetic regulation for securin and cyclin B1},
  journal = {Biomedical Research},
  year = 2018,
}

@article{CTT100786550,
  author = {Yoshitoshi Ogura and Yasuhiro Gotoh and Takehiko Itoh and Mitsuhiko P. Sato and Kazuko Seto and Shyuji Yoshino and Junko Isobe and Yoshiki Etoh and Mariko Kurogi and Keiko Kimata and Eriko Maeda and Denis Pierard and Masahiro Kusumoto and Masato Akiba and Kiyoshi Tominaga and Yumi Kirino and Yuki Kato and Katsuhiko Shirahige and Tadasuke Ooka and Nozomi Ishijima and Ken-ichi Lee and Sunao Iyoda and Jacques Georges Mainil and Tetsuya Hayashi},
  title = {Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages},
  journal = {Microbial genomics},
  year = 2017,
}

@article{CTT100747027,
  author = {Ajeng Pramono and Hirokazu Kuwahara and Takehiko Itoh and Toyoda Atsushi and Akinori Yamada and Hongoh Y},
  title = {Discovery and complete genome sequence of a bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut},
  journal = {Microbes and environments},
  year = 2017,
}

@article{CTT100747025,
  author = {Masahito Hayatsu and Kanako Tago and Ikuo Uchiyama and Atsushi Toyoda and Yong Wang and Yumi Shimomura and Takashi Okubo and Futoshi Kurisu and Yuhei Hirono and Kunihiko Nonaka and Hiroko Akiyama and Takehiko Itoh and Hideto Takami},
  title = {An acid-tolerant ammonia-oxidizing gamma-proteobacterium from soil},
  journal = {Isme Journal},
  year = 2017,
}

@article{CTT100747026,
  author = {Hideto Takami and Atsushi Toyoda and Ikuo Uchiyama and Takehiko Itoh and Yoshihiro Takaki and Wataru Arai and Shinro Nishi and Mikihiko Kawai and Kazuo Shin-ya and Haruo Ikeda},
  title = {Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1},
  journal = {DNA Research},
  year = 2017,
}

@article{CTT100747028,
  author = {Arzuba Akter and Tadasuke Ooka and Yasuhiro Gotoh and Seigo Yamamoto and Hiromi Fujita and Fumio Terasoma and Kouji Kida and Masakatsu Taira and Fumiko Nakadouzono and Mutsuyo Gokuden and Manabu Hirano and Mamoru Miyashiro and Kouichi Inari and Yukie Shimazu and Kenji Tabara and Atsushi Toyoda and Dai Yoshimura and Takehiko Itoh and Tomokazu Kitano and Mitsuhiko P. Sato and Keisuke Katsura and Shakhinur Islam Mondal and Yoshitoshi Ogura and Shuji Ando and Tetsuya Hayashi},
  title = {Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan},
  journal = {Genome Biology and Evolution},
  year = 2017,
}

@article{CTT100747029,
  author = {Masahiro Chatani and Hiroya Morimoto and Kazuhiro Takeyama and Akiko Mantoku and Naoki Tanigawa and Kubota Koji and Hiromi Suzuki and Satoko Uchida and Fumiaki Tanigaki and Masaki Shirakawa and Oleg Gusev and Vladimir Sychev and Yoshiro Takano and Takehiko Itoh and Akira Kudo},
  title = {Acute transcriptional up-regulation specific to osteoblasts/osteoclasts in medaka fish immediately after exposure to microgravity},
  journal = {Scientific Reports},
  year = 2016,
}

@article{CTT100747031,
  author = {Atsushi Hoshino and Vasanthan Jayakumar and Eiji Nitasaka and Atsushi Toyoda and Hideki Noguchi and Takehiko Itoh and Tadasu Shin-I and Yohei Minakuchi and Yuki Koda and Atsushi J. Nagano and Masaki Yasugi and Mie N. Honjo and Hiroshi Kudoh and Motoaki Seki and Asako Kamiya and Toshiyuki Shiraki and Piero Carninci and Erika Asamizu and Hiroyo Nishide and Sachiko Tanaka and Kyeung-Il Park and Yasumasa Morita and Kohei Yokoyama and Ikuo Uchiyama and Yoshikazu Tanaka and Satoshi Tabata and Kazuo Shinozaki and Yoshihide Hayashizaki and Yuji Kohara and Yutaka Suzuki and Sumio Sugano and Asao Fujiyama and Shigeru Iida and Yasubumi Sakakibara},
  title = {Genome sequence and analysis of the Japanese morning glory Ipomoea nil},
  journal = {Nature Communications},
  year = 2016,
}

@article{CTT100786547,
  author = {Kazuki Izawa and Hirokazu Kuwahara and Kumiko Kihara and Masahiro Yuki and Nathan Lo and Takehiko Itoh and Moriya Ohkuma and Yuichi Hongoh},
  title = {Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA},
  journal = {Genome biology and evolution},
  year = 2016,
}

@article{CTT100747034,
  author = {Vicky L Hunt and Isheng J Tsai and Avril Coghlan and Adam J Reid and Nancy Holroyd and Bernardo J Foth and Alan Tracey and James A Cotton and Eleanor J Stanley and Helen Beasley and Hayley M Bennett and Karen Brooks and Bhavana Harsha and Rei Kajitani and Arpita Kulkarni and Dorothee Harbecke and Eiji Nagayasu and Sarah Nichol and Yoshitoshi Ogura and Michael A Quail and Nadine Randle and Dong Xia and Norbert W Brattig and Hanns Soblik and Diogo M Ribeiro and Alejandro Sanchez-Flores and Tetsuya Hayashi and Takehiko Itoh and Dee R Denver and Warwick Grant and Jonathan D Stoltzfus and James B Lok and Haruhiko Murayama and Jonathan Wastling and Adrian Streit and Taisei Kikuchi and Mark Viney and Matthew Berriman},
  title = {The genomic basis of parasitism in the Strongyloides Glade of nematodes},
  journal = {Nature Genetics},
  year = 2016,
}

@article{CTT100747032,
  author = {Miki Okuno and Rei Kajitani and Rie Ryusui and Hiroya Morimoto and Yukiko Kodama and Takehiko Itoh},
  title = {Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization},
  journal = {DNA Research},
  year = 2016,
}

@article{CTT100747033,
  author = {Mariko Naito and Yoshitoshi Ogura and Takehiko Itoh and Mikio Shoji and Masaaki Okamoto and Tetsuya Hayashi and Koji Nakayama},
  title = {The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat},
  journal = {DNA Research},
  year = 2016,
}

@article{CTT100747038,
  author = {Hayashi Yamamoto and Takayuki Shima and Masaya Yamaguchi and Yuh Mochizuki and Hisashi Hoshida and Soichiro Kakuta and Chika Kondo-Kakuta and Nobuo N. Noda and Fuyuhiko Inagaki and Takehiko Itoh and Rinji Akada and Yoshinori Ohsumi},
  title = {The Thermotolerant Yeast Kluyveromyces marxianus Is a Useful Organism for Structural and Biochemical Studies of Autophagy},
  journal = {Journal of Biological Chemistry},
  year = 2015,
}

@article{CTT100747037,
  author = {Daijiro Konno and Takeya Kasukawa and Kosuke Hashimoto and Takehiko Itoh and Taeko Suetsugu and Ikuo Miura and Shigeharu Wakana and Piero Carninci and Fumio Matsuzaki},
  title = {STAP cells are derived from ES cells},
  journal = {Nature},
  year = 2015,
}

@article{CTT100747035,
  author = {Hideki Nishikawa and Takuro Iijima and Rei Kajitani and Junichi Yamaguchi and Toshiya Ando and Yutaka Suzuki and Sumio Sugano and Asao Fujiyama and Shunichi Kosugi and Hideki Hirakawa and Satoshi Tabata and Katsuhisa Ozaki and Hiroya Morimoto and Kunio Ihara and Madoka Obara and Hiroshi Hori and Takehiko Itoh and Haruhiko Fujiwara},
  title = {A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly},
  journal = {Nature Genetics},
  year = 2015,
}

@article{CTT100747036,
  author = {Hideko Urushihara and Hidekazu Kuwayama and Kensuke Fukuhara and Takehiko Itoh and Hiroshi Kagoshima and Tadasu Shin-I and Atsushi Toyoda and Kazuyo Ohishi and Tateaki Taniguchi and Hideki Noguchi and Yoko Kuroki and Takashi Hata and Kyoko Uchi and Kurato Mohri and Jason S King and Robert H Insall and Yuji Kohara and Asao Fujiyama},
  title = {Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation},
  journal = {Bmc Genomics},
  year = 2015,
}

@article{CTT100747040,
  author = {Rei Kajitani and Kouta Toshimoto and Hideki Noguchi and Atsushi Toyoda and Yoshitoshi Ogura and Miki Okuno and Mitsuru Yabana and Masayuki Harada and Eiji Nagayasu and Haruhiko Maruyama and Yuji Kohara and Asao Fujiyama and Tetsuya Hayashi and Takehiko Itoh},
  title = {Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads},
  journal = {Genome Research},
  year = 2014,
}

@article{CTT100747041,
  author = {Mikihiko Kawai and Taiki Futagami and Atsushi Toyoda and Yoshihiro Takaki and Shinro Nishi and Sayaka Hori and Wataru Arai and Taishi Tsubouchi and Yuki Morono and Ikuo Uchiyama and Takehiko Itoh and Asao Fujiyama and Fumio Inagaki and Hideto Takami},
  title = {High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes},
  journal = {Frontiers in Microbiology},
  year = 2014,
}

@article{CTT100747039,
  author = {Natsuno Suda and Takehiko Itoh and Ryuichiro Nakato and Daisuke Shirakawa and Masashige Bando and Yuki Katou and Kohsuke Kataoka and Katsuhiko Shirahige and Cheryll Tickle and Mikiko Tanaka},
  title = {Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis},
  journal = {Development},
  year = 2014,
}

@article{CTT100747045,
  author = {Yukako Hattori and Tadao Usui and Daisuke Satoh and Sanefumi Moriyama and Kohei Shimono and Takehiko Itoh and Katsuhiko Shirahige and Tadashi Uemura},
  title = {Sensory-Neuron Subtype-Specific Transcriptional Programs Controlling Dendrite Morphogenesis: Genome-wide Analysis of Abrupt and Knot/Collier},
  journal = {Developmental Cell},
  year = 2013,
}

@article{CTT100747044,
  author = {Ryuichiro Nakato and Takehiko Itoh and Katsuhiko Shirahige},
  title = {DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data},
  journal = {Genes To Cells},
  year = 2013,
}

@article{CTT100747046,
  author = {Eiji Nagayasu and Yoshitoshi Ogura and Takehiko Itoh and Ayako Yoshida and Gunimala Chakraborty and Tetsuya Hayashi and Haruhiko Maruyama},
  title = {Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis},
  journal = {Parasitology International},
  year = 2013,
}

@article{CTT100747050,
  author = {Giacomo De Piccoli and Yuki Katou and Takehiko Itoh and Ryuichiro Nakato and Katsuhiko Shirahige and Karim Labib},
  title = {Replisome Stability at Defective DNA Replication Forks Is Independent of S Phase Checkpoint Kinases},
  journal = {Molecular Cell},
  year = 2012,
}

@article{CTT100747048,
  author = {Hideto Takami and Hideki Noguchi and Yoshihiro Takaki and Ikuo Uchiyama and Atsushi Toyoda and Shinro Nishi and Gab-Joo Chee and Wataru Arai and Takuro Nunoura and Takehiko Itoh and Masahira Hattori and Ken Takai},
  title = {A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem},
  journal = {Plos One},
  year = 2012,
}

@article{CTT100747049,
  author = {Matthew A. Deardorff and Masashige Bando and Ryuichiro Nakato and Erwan Watrin and Takehiko Itoh and Masashi Minamino and Katsuya Saitoh and Makiko Komata and Yuki Katou and Dinah Clar1 and Kathryn E. Cole and Elfride De Baere and Christophe Decroos and Nataliya Di Donato and Sarah Ernst and Lauren J. Francey and Yolanda Gyftodimou and Kyotaro Hirashima and Melanie Hullings1 and Yuuichi Ishikawa and Christian Jaulin and Maninder Kaur and Tohru Kiyono and Patrick M. Lombardi6 and Laura Magnaghi-Jaulin4 and Geert R. Mortier and Naohito Nozaki and Michael B. Petersen and Hiroyuki Seimiya and Victoria M. Siu and Yutaka Suzuki and Kentaro Takagaki and Jonathan J. Wilde and Patrick J. Willems and Claude Prigent and Gabriele Gillessen-Kaesbach and David W. Christianson and Frank J. Kaiser and Laird G. Jackson and Toru Hirota and Ian D. Krantz and Katsuhiko Shirahige},
  title = {HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle},
  journal = {Nature},
  year = 2012,
}

@article{CTT100747057,
  author = {Mainil JG and Bardiau M and Ooka T and Ogura Y and Murase K and Etoh Y and Ichihara S and Horikawa K and Buvens G and Piérard D and Itoh T and Hayashi T.},
  title = {Typing of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle with IS621 multiplex PCR-based fingerprinting},
  journal = {Journal of Applied Microbiology},
  year = 2011,
}

@article{CTT100747056,
  author = {Tomomi Kuwahara and Yositoshi Ogura and Kenshiro Oshima and Ken Kurokawa and Tadasuke Ooka and Hideki Hirakawa and Takehiko Itoh and Haruyuki Nakayama-Imaohji and Minoru Ichimura and Kikuji Itoh and Chieko Ishifune and Yoichi Maekawa and Koji Yasutomo and Masahira Hattori and Tetsuya Hayashi},
  title = {The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing},
  journal = {DNA Research},
  year = 2011,
}

@article{CTT100747054,
  author = {Atsushi Sato and Kenshiro Oshima and Hideki Noguchi and Masahiro Ogawa and Tadashi Takahashi and Tetsuya Oguma and Yasuji Koyama and Takehiko Itoh and Masahira Hattori and Yoshiki Hanya},
  title = {Draft Genome Sequencing and Comparative Analysis of Aspergillus sojae NBRC4239},
  journal = {DNA Research},
  year = 2011,
}

@article{CTT100747053,
  author = {Andreas Kegel and Hanna Betts-Lindroos and Takaharu Kanno and Kristian Jeppsson and Lena Strom and Yuki Katou and Takehiko Itoh and Katsuhiko Shirahige and Camilla Sjogren},
  title = {Chromosome length influences replication-induced topological stress},
  journal = {Nature},
  year = 2011,
}

@article{CTT100747055,
  author = {Hugo Maruyama and Minsang Shin and Toshiyuki Oda and Rie Matsumi and Ryosuke L. Ohniwa and Takehiko Itoh and Katsuhiko Shirahige and Tadayuki Imanaka and Haruyuki Atomi and Shige H. Yoshimura and Kunio Takeyasu},
  title = {Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis},
  journal = {Molecular Biology of the Cell},
  year = 2011,
}

@article{CTT100747052,
  author = {Bin Hu and Takehiko Itoh and Ajay Mishra and Yuki Katoh and Kok-Lung Chan and William Upcher and Camilla Godlee and Maurici B. Roig and Katsuhiko Shirahige and Kim Nasmyth},
  title = {ATP Hydrolysis Is Required for Relocating Cohesin from Sites Occupied by Its Scc2/4 Loading Complex},
  journal = {Current Biology},
  year = 2011,
}

@article{CTT100747051,
  author = {Alexander Kurze and Katharine A Michie and Sarah E Dixon and Ajay Mishra and Takehiko Itoh and Syma Khalid and Lana Strmecki and Katsuhiko Shirahige and Christian H Haering and Jan Lowe and Kim Nasmyth},
  title = {A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion},
  journal = {Embo Journal},
  year = 2011,
}

@article{CTT100747063,
  author = {Kazushige Kuroha and Mayuko Akamatsu and Lyudmila Dimitrova and Takehiko Ito and Yuki Kato and Katsuhiko Shirahige and Toshifumi Inada},
  title = {Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest},
  journal = {Embo Reports},
  year = 2010,
}

@article{CTT100747058,
  author = {Pauli A and van Bemmel JG and Oliveira RA and Itoh T and Shirahige K and van Steensel B and Nasmyth K.},
  title = {A Direct Role for Cohesin in Gene Regulation and Ecdysone Response in Drosophila Salivary Glands},
  journal = {Current Biology},
  year = 2010,
}

@article{CTT100747062,
  author = {Jinglan Liu and Zhe Zhang and Masashige Bando and Takehiko Itoh and Matthew A. Deardorff and Dinah Clark and Maninder Kaur and Stephany Tandy and Kondo Tatsuro and Eric Rappaport and Nancy B. Spinner and Hugo Vega and Laird G. Jackson and Katsuhiko Shirahige and Ian D. Krantz},
  title = {Integrative Genomic Studies on Cornelia de Lange Syndrome},
  journal = {American Journal of Medical Genetics Part a},
  year = 2010,
}

@article{CTT100747061,
  author = {Jinglan Liu and Zhe Zhang and Masashige Bando and Takehiko Itoh and Matthew A. Deardorff, and Jennifer R. Li, and Dinah Clark and Maninder Kaur and Kondo Tatsuro and Antonie D. Kline and Celia Chang and Hugo Vega and Laird G. Jackson and Nancy B. Spinner and Katsuhiko Shirahige and Ian D. Krantz,},
  title = {Genome-wide DNA methylation analysis in cohesin mutant human cell lines},
  journal = {Nucleic Acids Research},
  year = 2010,
}

@article{CTT100747060,
  author = {Andrea Pauli and Takehiko Itoh and Raquel Oliveira and Katsuhiko Shirahige and Kim Nasmyth},
  title = {Cohesin: Not Just Important in Mitosis!},
  journal = {American Journal of Medical Genetics Part a},
  year = 2010,
}

@article{CTT100747059,
  author = {Takashi Sutani and Takashi Kawaguchi and Ryuhi Kanno and Takehiko Itoh and Katsuhiko Shirahige},
  title = {Budding Yeast Eco1 Counteracts Anti-"Cohesion Establishment" Function of Wpl1-Pds5 Complex},
  journal = {American Journal of Medical Genetics Part a},
  year = 2010,
}

@article{CTT100747071,
  author = {Satoshi Kobayashi and Taeko Komoda and Jiro Araki and Takeaki Taniguchi and Takehiko Ito and Keiichi Kuma and Asao Fujiyama},
  title = {Trait of "Genome Viewer" that can promptly retrieve homologous gene},
  journal = {Genes & Genetic Systems},
  year = 2009,
}

@article{CTT100747065,
  author = {Masashige Bando and Yuki Katou and Makiko Komata and Hirokazu Tanaka and Takehiko Itoh and Takashi Sutani and Katsuhiko Shirahige},
  title = {Csm3, Tof1, and Mrc1 Form a Heterotrimeric Mediator Complex That Associates with DNA Replication Forks},
  journal = {Journal of Biological Chemistry},
  year = 2009,
}

@article{CTT100747066,
  author = {Hirokazu Tanaka and Yuki Katou and Masaru Yagura and Katsuya Saitoh and Takehiko Itoh and Hiroyuki Araki and Masashige Bando and Katsuhiko Shirahige},
  title = {Ctf4 coordinates the progression of helicase and DNA polymerase alpha},
  journal = {Genes To Cells},
  year = 2009,
}

@article{CTT100747070,
  author = {Md Asadulghani and Yoshitoshi Ogura and Tadasuke Ooka and Takehiko Itoh and Akira Sawaguchi and Atsushi Iguchi and Keisuke Nakayama and Tetsuya Hayashi},
  title = {The Defective Prophage Pool of Escherichia coli O157: Prophage-Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants},
  journal = {Plos Pathogens},
  year = 2009,
}

@article{CTT100747069,
  author = {Kazuto Kugou and Tomoyuki Fukuda and Shintaro Yamada and Masaru Ito and Hiroyuki Sasanuma and Saori Mori and Yuki Katou and Takehiko Itoh and Kouji Matsumoto and Takehiko Shibata and Katsuhiko Shirahige and Kunihiro Ohta},
  title = {Rec8 Guides Canonical Spo11 Distribution along Yeast Meiotic Chromosomes},
  journal = {Molecular Biology of the Cell},
  year = 2009,
}

@article{CTT100747072,
  author = {Jinglan Liu and Zhe Zhang and Masashige Bando and Takehiko Itoh and Matthew A. Deardorff and Dinah Clark and Maninder Kaur and Stephany Tandy and Tatsuro Kondoh and Eric Rappaport and Nancy B. Spinner and Hugo Vega and Laird G. Jackson and Katsuhiko Shirahige and Ian D. Krantz},
  title = {Transcriptional Dysregulation in NIPBL and Cohesin Mutant Human Cells},
  journal = {Plos Biology},
  year = 2009,
}

@article{CTT100747067,
  author = {Yoshihiro Nakao and Takeshi Kanamori and Takehiko Itoh and Yukiko Kodama and Sandra Rainieri and Norihisa Nakamura and Tomoio Shimonaga and Masahira Hattori and Toshihiko Ashikari},
  title = {Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid},
  journal = {DNA Research},
  year = 2009,
}

@article{CTT100747064,
  author = {Takashi Sutani and Takashi Kawaguchi and Ryuhi Kanno and Takehiko Itoh and Katsuhiko Shirahige},
  title = {Budding Yeast Wpl1 (Rad61)-Pds5 Complex Counteracts Sister Chromatid Cohesion-Establishing Reaction},
  journal = {Current Biology},
  year = 2009,
}

@article{CTT100747068,
  author = {Katsuhiko Shirahige and Masashige Bando and Akiko Sakai and Yuki Katou and Takehiko Itoh},
  title = {Genomic Analyses of Cohesinopathy},
  journal = {GENES & GENETIC SYSTEMS},
  year = 2009,
}

@article{CTT100747076,
  author = {Masafumi Nishizawa and Tae Komai and Yuki Katou and Katsuhiko Shirahige and Takehiko Ito and Akio Toh-e},
  title = {Nutrient-Regulated Antisense and Intragenic RNAs Modulate a Signal Transduction Pathway in Yeast},
  journal = {Plos Biology},
  year = 2008,
}

@article{CTT100747075,
  author = {Hideki Noguchi and Takeaki Taniguchi and Takehiko Itoh},
  title = {MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes},
  journal = {DNA Research},
  year = 2008,
}

@article{CTT100747077,
  author = {Ken-ichi Nakamura and Aya Okamoto and yuki katou and Chie Yadani and Takeshi Shitanda and Chitrada Kaweeteerawat and Tatsuro S. Takahashi and Takehiko Itoh and Katsuhiko Shirahige and Hisao Masukata and Takuro Nakagawa},
  title = {Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe},
  journal = {Embo Journal},
  year = 2008,
}

@article{CTT100747074,
  author = {Claudio D'Ambrosio and Christine Katrin Schmidt and Yuki Katou and Gavin Kelly and Takehiko Itoh and Katsuhiko Shirahige and Frank Uhlmann},
  title = {Identification of cis-acting sites for condensin loading onto budding yeast chromosomes},
  journal = {Genes & Development},
  year = 2008,
}

@article{CTT100853297,
  author = {Kerstin S. Wendt and Keisuke Yoshida and Takehiko Itoh and Masashige Bando and Birgit Koch and Erika Schirghuber and Shuichi Tsutsumi and Genta Nagae and Ko Ishihara and Tsuyoshi Mishiro and Kazuhide Yahata and Fumio Imamoto and Hiroyuki Aburatani and Mitsuyoshi Nakao and Naoko Imamoto and Kazuhiro Maeshima and Katsuhiko Shirahige and Jan-Michael Peters},
  title = {Cohesin mediates transcriptional insulation by CCCTC-binding factor},
  journal = {Nature},
  year = 2008,
}

@article{CTT100747078,
  author = {Kobayashi, Satoshi and Komoda, Taeko and Araki, Jiro and Taniguchi, Takeaki and Ito, Takehiko and Kuma, Keiichi and Fujiyama, Asao and Takehiko Itoh},
  title = {Trait of genome viewer in Web Saito Jabion},
  journal = {Genes & Genetic Systems},
  year = 2008,
}

@article{CTT100747079,
  author = {Itoh, T. and Yoshida, K. and Went, K. S. and Bando, M. and Koch, B. K. and Katou, Y. and Masukata, H. and Masai, H. and Peters, J. and Shirahige, K. and Takehiko Itoh},
  title = {Analyses of eukaryotic chromosome structure and function by array based genomic approach},
  journal = {Febs Journal},
  year = 2007,
}

@article{CTT100747080,
  author = {Kurokawa, Ken and Itoh, Takehiko and Kuwahara, Tomomi and Oshima, Kenshiro and Toh, Hidehiro and Toyoda, Atsushi and Takami, Hideto and Morita, Hidetoshi and Sharma, Vineet K. and Srivastava, Tulika P. and Taylor, Todd D. and Noguchi, Hideki and Mori, Hiroshi and Ogura, Yoshitoshi and Ehrlich, Dusko S. and Itoh, Kikuji and Takagi, Toshihisa and Sakaki, Yoshiyuki and Hayashi, Tetsuya and Hattori, Masahira and Takehiko Itoh},
  title = {Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes},
  journal = {DNA Research},
  year = 2007,
}

@article{CTT100747081,
  author = {Koboyashi, Satoshi and Kawamoto, Shyoko and Muljadi, Hendry and Araki, Jiro and Taniguchi, Takeaki and Ito, Takehiko and Miyazaki, Satoru and Kuma, Keiichi and Fujiyama, Asao and Takehiko Itoh},
  title = {Construction of the web-based comparative genome viewer},
  journal = {Genes & Genetic Systems},
  year = 2007,
}

@article{CTT100747082,
  author = {Hayashi, Makoto and Katou, Yuki and Itoh, Takehiko and Tazumi, Mitsutoshi and Yamada, Yoshiki and Takahashi, Tatsuro and Nakagawa, Takuro and Shirahige, Katsuhiko and Masukata, Hisao and Takehiko Itoh},
  title = {Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast},
  journal = {Embo Journal},
  year = 2007,
}

@article{CTT100747083,
  author = {Hayashi, Makoto and Katou, Yuki and Itoh, Takehiko and Tazumi, Atsutoshi and Yamada, Yoshiki and Takahashi, Tatsuro and Nakagawa, Takuro and Shirahige, Katsuhiko and Masukata, Hisao and Takehiko Itoh},
  title = {Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast (vol 26, pg 1327, 2007)},
  journal = {Embo Journal},
  year = 2007,
}

@article{CTT100747084,
  author = {Lindroos, Hanna Betts and Strom, Lena and Itoh, Takehiko and Katou, Yuki and Shirahige, Katsuhiko and Sjogren, Camilla and Takehiko Itoh},
  title = {Chromosomal association of the Smc5/6 complex reveals that it functions in differently regulated pathways},
  journal = {Molecular Cell},
  year = 2006,
}

@article{CTT100747085,
  author = {Kuroki, Y and Toyoda, A and Noguchi, H and Taylor, TD and Itoh, T and Kim, DS and Kim, DW and Choi, SH and Kim, IC and Choi, HH and Kim, YS and Satta, Y and Saitou, N and Yamada, T and Morishita, S and Hattori, M and Sakaki, Y and Park, HS and Fujiyama, A and Takehiko Itoh},
  title = {Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway},
  journal = {Nature Genetics},
  year = 2006,
}

@article{CTT100747086,
  author = {Taylor, TD and Noguchi, H and Totoki, Y and Toyoda, A and Kuroki, Y and Dewar, K and Lloyd, C and Itoh, T and Takeda, T and Kim, DW and She, XW and Barlow, KF and Bloom, T and Bruford, E and Chang, JL and Cuomo, CA and Eichler, E and FitzGerald, MG and Jaffe, DB and LaButti, K and Nicol, R and Park, HS and Seaman, C and Sougnez, C and Yang, XP and Zimmer, AR and Zody, MC and Birren, BW and Nusbaum, C and Fujiyama, A and Hattori, M and Rogers, J and Lander, ES and Sakaki, Y and Takehiko Itoh},
  title = {Human chromosome 11 DNA sequence and analysis including novel gene identification},
  journal = {Nature},
  year = 2006,
}

@article{CTT100747087,
  author = {Koboyashi, Satoshi and Kawamoto, Shyko and Kitamoto, Asanobu and Muljadi, Hendry and Araki, Jiro and Ito, Takehiko and Miyazaki, Satoru and Takeda, Hideaki and Abe, Takashi and Sugawara, Hideaki and Gojyobori, Takashi and Fujiyama, Asao and Takehiko Itoh},
  title = {Let's use "New generation biotechnology portal" for the genetic education.},
  journal = {Genes & Genetic Systems},
  year = 2006,
}

@article{CTT100747088,
  author = {Ding, Da-Qiao and Sakurai, Nobuko and Katou, Yuki and Itoh, Takehiko and Shirahige, Katsuhiko and Haraguchi, Tokuko and Hiraoka, Yasushi and Takehiko Itoh},
  title = {Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast},
  journal = {Journal of Cell Biology},
  year = 2006,
}

@article{CTT100747089,
  author = {Riedel, CG and Katis, VL and Katou, Y and Mori, S and Itoh, T and Helmhart, W and Galova, M and Petronczki, M and Gregan, J and Cetin, B and Mudrak, I and Ogris, E and Mechtler, K and Pelletier, L and Buchholz, F and Shirahige, K and Nasmyth, K and Takehiko Itoh},
  title = {Protein phosphatase 2A protects centromeric sister chromatid cohesion during meiosis I},
  journal = {Nature},
  year = 2006,
}

@article{CTT100747090,
  author = {Nusbaum, C and Zody, MC and Borowsky, ML and Kamal, M and Kodira, CD and Taylor, TD and Whittaker, CA and Chang, JL and Cuomo, CA and Dewar, K and FitzGerald, MG and Yang, XP and Abouelleil, A and Allen, NR and Anderson, S and Bloom, T and Bugalter, B and Butler, J and Cook, A and DeCaprio, D and Engels, R and Garber, M and Gnirke, A and Hafez, N and Hall, JL and Norman, CH and Itoh, T and Jaffe, DB and Kuroki, Y and Lehoczky, J and Lui, A and Macdonald, P and Mauceli, E and Mikkelsen, TS and Naylor, JW and Nicol, R and Nguyen, C and Noguchi, H and O'Leary, SB and Piqani, B and Smith, CL and Talamas, JA and Topham, K and Totoki, Y and Toyoda, A and Wain, HM and Young, SK and Zeng, QD and Zimmer, AR and Fujiyama, A and Hattori, M and Birren, BW and Sakaki, Y and Lander, ES and Takehiko Itoh},
  title = {DNA sequence and analysis of human chromosome 18},
  journal = {Nature},
  year = 2005,
}

@article{CTT100747091,
  author = {Itoh, T and Toyoda, A and Taylor, TD and Sakaki, Y and Hattori, M and Takehiko Itoh},
  title = {Identification of large ancient duplications associated with human gene deserts},
  journal = {Nature Genetics},
  year = 2005,
}

@article{CTT100747093,
  author = {Collins, FS and Lander, ES and Rogers, J and Waterston, RH and Int Human Genome Sequencing Conso and Takehiko Itoh},
  title = {Finishing the euchromatic sequence of the human genome},
  journal = {Nature},
  year = 2004,
}

@article{CTT100747092,
  author = {Lengronne, A and Katou, Y and Mori, S and Yokobayashi, S and Kelly, GP and Itoh, T and Watanabe, Y and Shirahige, K and Uhlmann, F and Takehiko Itoh},
  title = {Cohesin relocation from sites of chromosomal loading to places of convergent transcription},
  journal = {Nature},
  year = 2004,
}

@article{CTT100747094,
  author = {Kuroki, Y and Taylor, TD and Toyoda, A and Watanabe, H and Yamada, T and Morishita, S and Itoh, T and Hattori, M and Sakaki, Y and Fujiyama, A and Takehiko Itoh},
  title = {Construction of a physical map for human-chimpanzee Y chromosome comparative analysis.},
  journal = {American Journal of Human Genetics},
  year = 2003,
}

@article{CTT100747095,
  author = {Sakaki, Y and Watanabe, H and Taylor, T and Hattori, M and Fujiyama, A and Toyoda, A and Kuroki, Y and Itoh, T and Saitou, N and Oota, S and Kim, CG and Kitano, T and Lehrach, H and Yaspo, ML and Sudbrak, R and Kahla, A and Reinhardt, R and Kube, M and Platzer, M and Taenzer, S and Galgoczy, P and Kel, A and Bloecker, H and Scharfe, M and Nordsiek, G and Hellmann, I and Khaitovich, P and Paabo, S and Chen, Z and Wang, SY and Ren, SX and Zhang, XL and Zheng, HJ and Zhu, GF and Wang, BF and Zhao, GP and Tsai, SF and Wu, K and Liu, TT and Hsiao, KJ and Park, HS and Lee, YS and Cheong, JE and Choi, SH and Chimpanzee Chromosome 22 Sequencing C and Takehiko Itoh},
  title = {Human versus chimpanzee chromosome-wide sequence comparison and its evolutionary implication},
  journal = {Cold Spring Harbor Symposia on Quantitative Biology},
  year = 2003,
}

@article{CTT100747098,
  author = {Takeshi Kawabata and Satoshi Fukuchi and Keiichi Homma and Motonori Ota and Jiro Araki and Takehiko Ito and Nobuyuki Ichiyoshi and Ken Nishikawa},
  title = {GTOP: a database of protein structures predicted from genome sequences},
  journal = {Nucleic Acids Research},
  year = 2002,
}

@article{CTT100747096,
  author = {Toyoda, A and Noguchi, H and Taylor, TD and Ito, T and Pletcher, MT and Sakaki, Y and Reeves, RH and Hattori, M and Takehiko Itoh},
  title = {Comparative genomic sequence analysis of the human chromosome 21 Down syndrome critical region},
  journal = {Genome Research},
  year = 2002,
}

@article{CTT100747097,
  author = {Fujiyama, A and Watanabe, H and Toyoda, A and Taylor, TD and Itoh, T and Tsai, SF and Park, HS and Yaspo, ML and Lehrach, H and Chen, Z and Fu, G and Saitou, N and Osoegawa, K and de Jong, PJ and Suto, Y and Hattori, M and Sakaki, Y and Takehiko Itoh},
  title = {Construction and analysis of a human-chimpanzee comparative clone map},
  journal = {Science},
  year = 2002,
}

@article{CTT100747099,
  author = {Itoh, T and Yada, T and Takehiko Itoh},
  title = {Guide to HGREP(Human Genome Reconstruction Project)},
  journal = {Trends in Glycoscience and Glycotechnology},
  year = 2002,
}

@article{CTT100747100,
  author = {Graf, D and Timmons, PM and Hitchins, M and Episkopou, V and Moore, G and Ito, T and Fujiyama, A and Fisher, AG and Merkenschlager, M and Takehiko Itoh},
  title = {Evolutionary conservation, developmental expression, and genomic mapping of mammalian Twisted gastrulation},
  journal = {Mammalian Genome},
  year = 2001,
}

@article{CTT100747101,
  author = {Lander, ES and Int Human Genome Sequencing Consortium and Linton, LM and Birren, B and Nusbaum, C and Zody, MC and Baldwin, J and Devon, K and Dewar, K and Doyle, M and FitzHugh, W and Funke, R and Gage, D and Harris, K and Heaford, A and Howland, J and Kann, L and Lehoczky, J and LeVine, R and McEwan, P and McKernan, K and Meldrim, J and Mesirov, JP and Miranda, C and Morris, W and Naylor, J and Raymond, C and Rosetti, M and Santos, R and Sheridan, A and Sougnez, C and Stange-Thomann, N and Stojanovic, N and Subramanian, A and Wyman, D and Rogers, J and Sulston, J and Ainscough, R and Beck, S and Bentley, D and Burton, J and Clee, C and Carter, N and Coulson, A and Deadman, R and Deloukas, P and Dunham, A and Dunham, I and Durbin, R and French, L and Grafham, D and Gregory, S and Hubbard, T and Humphray, S and Hunt, A and Jones, M and Lloyd, C and McMurray, A and Matthews, L and Mercer, S and Milne, S and Mullikin, JC and Mungall, A and Plumb, R and Ross, M and Shownkeen, R and Sims, S and Waterston, RH and Wilson, RK and Hillier, LW and McPherson, JD and Marra, MA and Mardis, ER and Fulton, LA and Chinwalla, AT and Pepin, KH and Gish, WR and Chissoe, SL and Wendl, MC and Delehaunty, KD and Miner, TL and Delehaunty, A and Kramer, JB and Cook, LL and Fulton, RS and Johnson, DL and Minx, PJ and Clifton, SW and Hawkins, T and Branscomb, E and Predki, P and Richardson, P and Wenning, S and Slezak, T and Doggett, N and Cheng, JF and Olsen, A and Lucas, S and Elkin, C and Uberbacher, E and Frazier, M and Gibbs, RA and Muzny, DM and Scherer, SE and Bouck, JB and Sodergren, EJ and Worley, KC and Rives, CM and Gorrell, JH and Metzker, ML and Naylor, SL and Kucherlapati, RS and Nelson, DL and Weinstock, GM and Sakaki, Y and Fujiyama, A and Hattori, M and Yada, T and Toyoda, A and Itoh, T and Kawagoe, C and Watanabe, H and Totoki, Y and Taylor, T and Weissenbach, J and Heilig, R and Saurin, W and Artiguenave, F and Brottier, P and Bruls, T and Pelletier, E and Robert, C and Wincker, P and Rosenthal, A and Platzer, M and Nyakatura, G and Taudien, S and Rump, A and Yang, HM and Yu, J and Wang, J and Huang, GY and Gu, J and Hood, L and Rowen, L and Madan, A and Qin, SZ and Davis, RW and Federspiel, NA and Abola, AP and Proctor, MJ and Myers, RM and Schmutz, J and Dickson, M and Grimwood, J and Cox, DR and Olson, MV and Kaul, R and Shimizu, N and Kawasaki, K and Minoshima, S and Evans, GA and Athanasiou, M and Schultz, R and Roe, BA and Chen, F and Pan, HQ and Ramser, J and Lehrach, H and Reinhardt, R and McCombie, WR and de la Bastide, M and Dedhia, N and Blocker, H and Hornischer, K and Nordsiek, G and Agarwala, R and Aravind, L and Bailey, JA and Bateman, A and Batzoglou, S and Birney, E and Bork, P and Brown, DG and Burge, CB and Cerutti, L and Chen, HC and Church, D and Clamp, M and Copley, RR and Doerks, T and Eddy, SR and Eichler, EE and Furey, TS and Galagan, J and Gilbert, JGR and Harmon, C and Hayashizaki, Y and Haussler, D and Hermjakob, H and Hokamp, K and Jang, WH and Johnson, LS and Jones, TA and Kasif, S and Kaspryzk, A and Kennedy, S and Kent, WJ and Kitts, P and Koonin, EV and Korf, I and Kulp, D and Lancet, D and Lowe, TM and McLysaght, A and Mikkelsen, T and Moran, JV and Mulder, N and Pollara, VJ and Ponting, CP and Schuler, G and Schultz, JR and Slater, G and Smit, AFA and Stupka, E and Szustakowki, J and Thierry-Mieg, D and Thierry-Mieg, J and Wagner, L and Wallis, J and Wheeler, R and Williams, A and Wolf, YI and Wolfe, KH and Yang, SP and Yeh, RF and Collins, F and Guyer, MS and Peterson, J and Felsenfeld, A and Wetterstrand, KA and Patrinos, A and Morgan, MJ and Int Human Genome Sequencing Conso and Takehiko Itoh},
  title = {Initial sequencing and analysis of the human genome},
  journal = {Nature},
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}

@inproceedings{CTT100908164,
  author = {Takahiro Yamabe and Takehiko Itoh},
  title = {Short Chromosomes and Gene Conservation in Hawk Moths (Lepidoptera: Sphingidae)},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100908162,
  author = {⼩野島孝雄 and ⽴花和則 and 伊藤武彦},
  title = {エダアシクラゲ(Cladonema radiatum)のゲノム配列内における性特異的領域の特定},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100908163,
  author = {山部貴央 and 伊藤武彦},
  title = {比較ゲノム解析による鱗翅目昆虫の染色体進化の解明},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100908160,
  author = {今井大智 and 伊藤武彦},
  title = {相同染色体間の差異を考慮したゲノム配列構築手法の開発},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100908161,
  author = {塙⼤輝 and ⽥中裕之 and 五島剛太 and 伊藤武彦},
  title = {ハネモの全ゲノム配列構築},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100888102,
  author = {賈云帆 and 相原光人 and 長澤竜樹 and 伊藤武彦 and 二階堂雅人},
  title = {透明ナマズとその近縁種を用いた発現変動遺伝子解析による筋肉透明化遺伝子の探索},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100891443,
  author = {田中 裕之 and 堀立樹 and 山本祥平 and 豊田敦 and 矢野健太郎 and 山根京子 and 伊藤武彦},
  title = {ワサビゲノム解読の現状},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100891446,
  author = {Shun Ouchi and Rei Kajitani and Takehiko Itoh},
  title = {GreenHill: A De Novo Chromosome-Level Scaffolding and Phasing Tool Using Hi-C},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100891445,
  author = {Takahiro Yamabe and Rei Kajitani and Atsushi Toyoda and Takehiko Itoh},
  title = {Chromosome-Level De Novo Genome Assembly and Comparative Genome Analysis of the Coffee Bee Hawk Moth, Cephonodes Hylas},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100891440,
  author = {持丸侑太 and 松岡健太朗 and 奥野未来 and 清岡美穂 and 石崎比奈子 and 豊田敦 and 黒岩麻里 and 伊藤武彦},
  title = {オキナワトゲネズミの新規ゲノム配列決定とneo性染色体のゲノム解析},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100891441,
  author = {松岡健太朗 and 持丸侑太 and 奥野未来 and 清岡美穂 and 石崎比奈子 and 豊田敦 and 黒岩麻里 and 伊藤武彦},
  title = {トクノシマトゲネズミの新規ゲノム構築とX染色体上祖先Y領域の比較解析},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100888079,
  author = {畑島諒 and 豊田敦 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {免疫関連遺伝子の発現消失がもたらしたシクリッドの唇肥大化平行進化},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100888081,
  author = {今本南 and 中村遥奈 and 相原光人 and 伊藤武彦 and 二階堂雅人},
  title = {卵泥棒・マタンビハンターのボトルネックと進化史},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100875312,
  author = {畑島諒 and 待井長敏 and 豊田敦 and 梶谷嶺 and 長澤竜樹 and 伊藤武彦 and 二階堂雅人.},
  title = {免疫システムがもたらしたシクリッドの唇肥大化平行進化},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100875315,
  author = {今本南 and 中村遥奈 and 相原光人 and 伊藤武彦 and 二階堂雅人},
  title = {卵を食べるシクリッドの系統的起源},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100891438,
  author = {山部貴央 and 梶谷嶺 and 豊田敦 and 伊藤武彦},
  title = {スズメガ科昆虫オオスカシバの新規ゲノムアセンブリと比較ゲノム解析},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100865913,
  author = {今本南 and 中村遥奈 and 相原光人 and 伊藤武彦 and 二階堂雅人},
  title = {全ゲノムから迫るビクトリア湖産シクリッド Haplochromis sp. “matumbi hunter”の集団史},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100891439,
  author = {服部拓海 and 梶谷嶺 and 伊藤武彦},
  title = {Hi-Cデータを用いたビニングツールの開発},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100865871,
  author = {今本南 and 中村遥奈 and 相原光人 and 伊藤武彦 and 二階堂雅人},
  title = {卵泥棒の起源からシクリッドの適応放散を探る},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100865880,
  author = {Hatashima, R. and Toyoda, A. and Kajitani and Takehiko Itoh and Nikaido, M.},
  title = {A key factor for parallel evolution of hypertrophied lips in East African cichlid fishes},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100865876,
  author = {Imamoto, M. and Nakamura, H. and Aibara, M. and Takehiko. and Nikaido, M.},
  title = {Evolutionary history of egg hunting cichlids in Lake Victoria},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100865873,
  author = {畑島諒 and 豊田敦 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {東アフリカ産シクリッドで見られる唇肥大化平行進化の分子メカニズム},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851551,
  author = {梶谷嶺 and 石井裕太 and 伊藤武彦},
  title = {ロングおよびショートリードを活用するハイブリッド型メタゲノムアセンブラの新規開発},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851964,
  author = {今本南 and 中村遥奈 and 相原光人 and 伊藤武彦 and 二階堂雅人},
  title = {ヴィクトリア湖に生息する卵・稚魚食性シクリッド Haplochromis sp. “matumbi hunter” の進化の歴史},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851549,
  author = {大内俊 and 梶谷嶺 and 豊田敦 and 伊藤武彦},
  title = {Hi-C法による染色体レベルのscaffolding，ハプロタイプ構築手法の開発と高ヘテロ接合性サンプル（イトマキヒトデ）への応用},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100837210,
  author = {畑島諒 and 豊田敦 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {シクリッドにおける唇肥大化の平行進化メカニズム解明},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100837209,
  author = {畑島諒 and 豊田敦 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {シクリッドにおける唇肥大化の平行進化メカニズム},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100837212,
  author = {中村遥奈 and 畑島諒 and 相原光人 and 豊田敦 and 伊藤武彦 and 二階堂雅人},
  title = {ヴィクトリア湖産シクリッドHaplochromis chilotesの全ゲノム配列解析による分集団における適応過程の解明},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100837213,
  author = {中村遥奈 and 相原光人 and 豊田敦 and 伊藤武彦 and 二階堂雅人},
  title = {全ゲノム解析によるヴィクトリア湖産シクリッドにおける種特有の適応パターンの解明},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100837221,
  author = {今本南 and 中村遥奈 and 相原光人 and 伊藤武彦 and 二階堂雅人},
  title = {ヴィクトリア湖固有シクリッド Haplochromis sp. “matumbi hunter” の遺伝的多様性},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100837208,
  author = {畑島諒 and 豊田敦 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {シクリッドにおける唇肥大化の平行進化メカニズム},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851548,
  author = {山部貴央 and 小林史弥 and 梶谷嶺 and 伊藤武彦},
  title = {アゲハチョウ属5種の比較ゲノム解析},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851547,
  author = {湯淺英知 and 中村優太 and 小林史弥 and 安田仁奈 and 梶谷嶺 and 伊藤武彦},
  title = {オニヒトデ属(Acanthaster spp.)の比較ゲノム解析},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100820592,
  author = {中村遥奈 and 相原光人 and 豊田敦 and 伊藤武彦 and 二階堂雅人},
  title = {全ゲノム配列解析による異なる湖底環境に生息するヴィクトリア湖産シクリッド3種の適応過程の解明},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100820589,
  author = {畑島諒 and 豊田敦 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {シクリッドにおける唇肥大化の平行進化メカニズム},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100820587,
  author = {中村遥奈 and 相原光人 and 豊田敦 and 伊藤武彦 and 二階堂雅人},
  title = {全ゲノム配列解析による異なる湖底環境に生息するヴィクトリア湖産シクリッド3種の適応過程の解明},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851546,
  author = {服部淳 and 吉村大 and 谷口愛樹 and 林哲也 and 伊藤武彦},
  title = {Comprehensive detection of insertion sequences in bacterial genomes},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851545,
  author = {Rei Kajitani and Miki Okuno and Hiroyuki Tanaka and Atsushi Toyoda and Takehiko Itoh},
  title = {Platanus-allee is a de novo haplotype assembler designed for organisms with highly divergent haplotypes: an update},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851544,
  author = {Miki Okuno and Rei Kajitani and Hiroyuki Tanaka and Shuhei Mizushima and Asato Kuroiwa and Takehiko Itoh},
  title = {Whole-genome sequencing and comparative analysis of Emu provides insights into sex chromosome evolution of the palaeognathae clade},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851541,
  author = {黒岩麻里 and 奥野未来 and 伊藤武彦 and 寺尾美穂 and 小川湧也 and 高田修治 and 水島秀成},
  title = {トゲネズミ属におけるSRY遺伝子に依存しない性決定の分子メカニズム},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100849455,
  author = {山崎はるか and 梶谷嶺 and 伊藤武彦 and 千葉和義},
  title = {イトマキヒトデ卵における母性mRNAのU修飾とRNA再利用},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100851543,
  author = {佐藤柾幸 and 西村浩平 and 堀哲也 and 深川竜郎 and 伊藤武彦},
  title = {Hi-Cを用いたネオセントロメア形成に伴う染色体高次構造の変化の解析},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100851542,
  author = {宮本淳太郎 and 奥野未来 and 伊藤武彦 and 水島秀成 and 黒岩麻里},
  title = {ニホンウズラにおける性分化関連遺伝子および新規性決定候補遺伝子の解析},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100837183,
  author = {Takayuki Enomoto and Hidefumi Nishida and Tetsuo Iwata and Akito Fujita and Kanako Nakayama and Takahiro Kashiwagi and Yasue Hatanaka and Hiro Kondo and Rei Kajitani and Takehiko Itoh and Makoto Ohmoto and Ichiro Matsumoto and Junji Hirota},
  title = {Mechanism of odorant receptor class choice in mice},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100809300,
  author = {服部 淳 and 伊藤 武彦 and 吉村 大},
  title = {Comprehensive detection of insertion sequences in bacterial genomes},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100840569,
  author = {Palihati Maierdan and Hideo Tsubouchi and Rei Kajitani and 韓龍雲 and Takehiko Itoh and Hiroshi Iwasaki},
  title = {BRCA2 homolog of Cryptococcus liquefaciens required for DNA repair},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100810868,
  author = {畑島諒 and 鈴木健太 and 豊田敦 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {シクリッドの唇肥大化における平行進化の遺伝的メカニズム解明},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100810865,
  author = {樋口拓人 and 西原秀典 and 梶谷嶺 and 豊田敦 and 伊藤武彦 and 岡田典弘 and 二階堂雅人},
  title = {東アフリカ産淡水魚シクリッドゲノムにおける祖先多型遺伝子座の起源},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100809302,
  author = {小林 史弥 and 梶谷 嶺 and 奥野 未来 and 湯淺 英知 and 中村 優太 and 伊藤 武彦},
  title = {ドラフトゲノムに対応した遺伝子構造アノテーション自動構築パイプラインの開発},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100809301,
  author = {中村 優太 and 梶谷 嶺 and 小林 史弥 and 湯淺 英知 and 伊藤 武彦},
  title = {ドラフトゲノムの不完全性が遺伝子構造アノテーションに及ぼす影響の解析},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100810872,
  author = {樋口拓人 and 西原秀典 and 梶谷嶺 and 豊田敦 and 伊藤武彦 and 岡田典弘 and 二階堂雅人},
  title = {ゲノムワイドなSINE 挿入解析から東アフリカ産シクリッドにおける祖先多型の持続性を解明する},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100810871,
  author = {中村遥奈 and 畑島諒 and 豊田敦 and 伊藤武彦 and 二階堂雅人},
  title = {全ゲノム比較が明らかにしたヴィクトリア湖産シクリッド3種の適応プロセス},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100813598,
  author = {Palihati M and Tsubouchi H and Han, YW and Ito, T and Iwasaki H},
  title = {BRCA2 homolog from Cyptococcus liquefaciens},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100810880,
  author = {樋口拓人 and 西原秀典 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {東アフリカシクリッドゲノムにおける祖先多型遺伝子座の起源},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100786611,
  author = {岡野真佑 and 奥野未来 and 梶谷嶺 and 黒岩麻里 and 伊藤武彦},
  title = {Y染色体をもたないアマミトゲネズミの遺伝子配列を用いた進化学的解析},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100786610,
  author = {福井雅基 and 梶谷嶺 and 伊藤武彦},
  title = {全ゲノムショットガンデータを利用した包括的なゲノム上のSegmental Duplication検出手法の開発},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100786613,
  author = {篠田恭寛 and 梶谷嶺 and 小林 史弥 and 髙橋和希 and 中村優太 and 湯淺英知 and 伊藤武彦},
  title = {網羅的遺伝子構造予測自動アノテーションパイプラインの開発},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100810886,
  author = {樋口拓人 and 西原秀典 and 梶谷嶺 and 伊藤武彦 and 二階堂雅人},
  title = {東アフリカ産シクリッド全ゲノムを対象にした祖先多型遺伝子座の網羅的探索},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100810887,
  author = {鈴木彦有 and 佐久間敦丈 and 依田涼太 and 岡部 正隆 and 伊藤武彦 and 廣田順二 and 二階堂雅人},
  title = {脊椎動物の４億年以上に渡る進化の過程で保持されてきたフェロモン受容体},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100767027,
  author = {吉村⼤ and 後藤 恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を⽤いた近縁菌株間⾼精度SNP検出パイプラインBactSNPの開発},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100786607,
  author = {岡本大樹 and 伊藤武彦},
  title = {NGSによるSingle Locus Sequence Typing(SLST)を⽤いたニキビに対する⽪膚常在細菌の役割の理解に向けて},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100767026,
  author = {梶⾕嶺 and 小椋義俊 and 後藤恭宏 and 林哲也 and 伊藤武彦},
  title = {10X-Linked-reads、Mate-pairを活⽤したメタゲノムアセンブリ⼿法の開発},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100767802,
  author = {角崎太郎 and 石毛大輔 and 岩崎博史 and 伊藤武彦},
  title = {Hi-Cを用いた二倍体出芽酵母の染色体構造解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767801,
  author = {古宮正隆 and 西村浩平 and 堀哲也 and 深川竜郎 and 伊藤武彦},
  title = {4C-Seqを用いたネオセントロメア形成に伴う染色体高次構造変化の解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100786624,
  author = {髙橋和希 and 梶谷嶺 and 湯淺英知 and Nalinee Thongtham and Niphon Phongsuwan and Zac Forsman and 安田仁奈 and 伊藤武彦},
  title = {全ゲノム情報に基づく太平洋とインド洋のオニヒトデの比較解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100786625,
  author = {湯淺英知 and 梶谷嶺 and 髙橋和希 and 吉村大 and 小椋義俊 and Zac Forsman and Nalinee Thongtham and Niphon Phongsuwan and Coralie Taquet and Marc Taquet and 林哲也 and 伊藤武彦 and 安田仁奈},
  title = {異所的に種分化したオニヒトデ種間での受精遺伝子の進化},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767806,
  author = {田中良樹 and 梶谷嶺 and 豊田敦 and 後藤友二 and 久保田宗一郎 and 伊藤武彦},
  title = {ショートリードを用いたリピート配列のde novo検出法の開発},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767809,
  author = {野川駿 and 岩永紗弥 and 梶谷嶺 and 越智洋絵 and 鈴木穣 and 千葉和義 and 伊藤武彦},
  title = {イトマキヒトデの卵成熟前後におけるmRNA3’末端の網羅的解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767803,
  author = {梶谷嶺 and 吉村大 and 奥野未来 and 豊田敦 and 伊藤武彦},
  title = {Platanus2: a de novo haplotype assembler enabling comprehensive accesses to divergent heterozygous region},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100780798,
  author = {Ajeng Pramono and Hirokazu Kuwahara and Takehiko Itoh and Toyoda Atsushi and Moriya Ohkuma and Akinori Yamada and Yuichi Hongoh},
  title = {Bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut, Prorhinotermes japonicus (Isoptera: family Rhinotermitidae)},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767833,
  author = {中村佳司 and 村瀬一典 and 伊藤武彦 and ジャック メニエール and 吉野修司 and 黒木真理子 and 木全恵子 and 磯部順子 and 勢戸和子 and 江藤良樹 and 前田詠里子 and 緒方喜久代 and 成松浩志 and 齋藤志保子 and 八柳潤 and 伊豫田淳 and 大西真 and 大岡唯祐 and 後藤恭宏 and 小椋義俊 and 林哲也},
  title = {比較ゲノムによる腸管出血性大腸菌 O145:H28 の多様性解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767832,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {ゲノム配列情報を用いた近縁菌株間高精度 SNP 検出手法の開発：病原菌感染経路推測への応用},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767834,
  author = {後藤恭宏 and 片平雄之 and 吉村大 and 伊藤武彦 and 小椋義俊 and 林哲也},
  title = {超高精度分子疫学解析で迫る病原菌の動態},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767837,
  author = {梶谷嶺 and 小椋義俊 and 後藤恭宏 and 吉村大 and 奥野未来 and 林哲也 and 伊藤武彦},
  title = {メタゲノムショットガンデータからの株ハプロタイプ配列構築手法の開発},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767838,
  author = {番匠康雄 and 梶谷嶺 and 伊藤武彦},
  title = {PacBioおよびIlluminaシークエンサを用いた新規アセンブル手法の開発},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767839,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 梶谷嶺 and 奥野未来 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を用いた菌株間系統樹推定パイプラインの開発},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767847,
  author = {森田有貴 and 奥野未来 and 吉村大 and 立花広太 and 梶谷嶺 and 古俣麻希子 and 白髭克彦 and 森川あすか and 伊藤武彦},
  title = {次世代シークエンサを用いたSLSTによるPropionibacterium acnesタイピング解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767849,
  author = {佐藤光彦 and 小椋義俊 and 中村佳司 and 西田留梨子 and 後藤恭宏 and 久恒順三 and 菅井基行 and 伊藤武彦 and 林哲也},
  title = {ブドウ球菌属におけるライブラリ調製キットNextera XTによるGC含有量と相関した シーケンスバイアス},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767850,
  author = {奥野未来 and 立花広太 and 吉村大 and 森田有貴 and 梶谷嶺 and 古俣麻希子 and 白髭克彦 and 森川あすか and 伊藤武彦},
  title = {皮膚常在細菌Propionibacterium acnesの全ゲノム比較解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767888,
  author = {西村浩平 and 堀哲也 and 古宮正隆 and 伊藤武彦 and 深川竜郎},
  title = {ネオセントロメア形成領域における染色体3D構造},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100767851,
  author = {和田陽介 and 伊藤武彦 and 梶谷嶺},
  title = {全ゲノムシークエンスデータに基づいた高精度配列構造変異検出プロトコルの構築},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100727030,
  author = {伊澤和輝 and 麥島雄太 and 桑原宏和 and 河合幹彦 and 木原久美子 and Nathan Lo and 雪真弘 and 伊藤武彦 and 大熊盛也 and 本郷裕一},
  title = {対ファージ防衛機構が示すEndomicrobium属細胞内共生細菌の適応進化},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100767901,
  author = {森本博也 and 伊藤武彦},
  title = {真核微生物ゲノムに対する階層的 ab initio 遺伝子予測手法開発},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100767900,
  author = {梶谷嶺 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {低コスト・高精度なバクテリアゲノム配列構築手法の開発},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100767899,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {次世代シークエンサを用いた菌株間 SNP 検出における問題点と検出プロトコルの構築},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100767890,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発：病原菌感染経路推測への応用},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100767903,
  author = {須谷尚史 and 宝田裕 and 立花広太 and 伊藤武彦 and 白髭克彦},
  title = {大規模解析により明らかになった日本人女性の顔面皮膚細菌叢の構造},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767905,
  author = {千代島隆広 and 立花和則 and 梶谷嶺 and 岸本健雄 and 伊藤武彦},
  title = {イトマキヒトデのde novoアセンブリ},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767912,
  author = {森本博也 and 筒井康博 and 岩崎博史 and 伊藤武彦},
  title = {深海酵母Cryptococcus liquefaciens strain N6のゲノム再構築とRNA-Seqによる銅耐性の解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767907,
  author = {奥野未来 and 児玉由紀子 and 伊藤武彦},
  title = {異種交配株ラガービール酵母と近縁種のゲノム比較解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767911,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発：病原菌感染経路推測への応用},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767913,
  author = {梶谷嶺 and 野口英樹 and 桑原知己 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {メタゲノム用de novoアセンブリ・クラスタリングツールMetaPlatanusの開発},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767932,
  author = {梶谷嶺 and 小椋義俊 and 桑原知己 and 林哲也 and 伊藤武彦},
  title = {メタゲノム用de novoアセンブラの開発およびIlluminaデータを用いたベンチマーク},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100767929,
  author = {奥野未来 and 児玉由紀子 and 伊藤武彦},
  title = {single nucleotide variation (SNV)を考慮したラガービール酵母のゲノム再解析},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100767928,
  author = {児玉由紀子 and 奥野未来 and 伊藤武彦},
  title = {次世代シーケンサーを用いた下面ビール酵母のゲノム解析},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100747047,
  author = {Yukiko Kodama and Miki Okuno and Takehiko Itoh},
  title = {Whole genome analysis of a lager brewing yeast Weihenstephan 34/70 using next generation sequencing technology},
  booktitle = {Yeast},
  year = 2013,
}

@inproceedings{CTT100790151,
  author = {須田夏野 and 白川大介 and 伊藤武彦 and 中戸隆一郎 and 坂東優篤 and 白髭克彦 and 片岡浩介 and Cheryll Tickle and 田中幹子},
  title = {Dimeric combinations of MafB, cFos, and cJun control the apoptosis–survival balance in limb morphogenesis},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100767931,
  author = {西村智洋 and 立花和則 and 岸本健雄 and 伊藤武彦},
  title = {イトマキヒトデゲノムのde novoアセンブリ},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100747042,
  author = {Miki Okuno and Yukiko Kodama and Takehiko Itoh},
  title = {A whole genome comparison between lager brewing yeast Weihenstephan 34/70 and its ancestral strains},
  booktitle = {Yeast},
  year = 2013,
}

@inproceedings{CTT100767933,
  author = {奥野未来 and 児玉由紀子 and 伊藤武彦},
  title = {Illuminaシークエンサを用いたラガービール酵母Weihenstephan34/70ゲノムの決定},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100790158,
  author = {須田夏野 and 白川大介 and 伊藤武彦 and 中戸隆一郎 and 坂東優篤 and 白髭克彦 and 片岡浩介 and Cheryll Tickle and 田中幹子},
  title = {Dimeric combinations of MafB, c-maf, c-Jun and c-Fos control the apoptosis–survival balance in limb patterning under BMP/FGF regulation},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100767934,
  author = {梶谷嶺 and 伊藤武彦},
  title = {メタゲノムデータ用de novoアセンブラーの開発},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100767935,
  author = {原田真幸 and 小椋義俊 and 伊藤武彦 and 桑原知巳 and 林哲也},
  title = {ヒト体内細菌叢における接合型トランスポゾンの解析},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100767940,
  author = {福原健輔 and 伊藤武彦 and 畑敬士 and 桑山秀一 and 漆原秀子},
  title = {細菌性粘菌種間における比較トランスクリプトーム解析},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100767939,
  author = {矢花充 and 長安英治 and 小椋義俊 and 林哲也 and 丸山治彦 and 伊藤武彦},
  title = {高ヘテロ接合性をもつベネズエラ糞線虫のゲノム解析},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100767937,
  author = {梶谷嶺 and 伊藤武彦},
  title = {高ヘテロ接合性ゲノムのde novoアセンブリ},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100767936,
  author = {吉村慶人 and 伊藤武彦},
  title = {Contigレベルの真核ゲノム配列に対する効果的な遺伝子予測パイプラインの開発},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100790177,
  author = {Natsuno Suda and Daisuke Shirakawa and Takehiko Itoh and Masashige Bando and Katsuhiko Shirahige and Kohsuke Kataoka and Cheryll Tickle and Mikiko Tanaka},
  title = {Dimeric combinations of MafB, c-maf, c-Jun and c-Fos control the apoptosis–survival balance in limb patterning under BMP/FGF regulation},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100790187,
  author = {Natsuno Suda and Daisuke Shirakawa and Takehiko Itoh and Masashige Bando and Katsuhiko Shirahige and Kohsuke Kataoka and Cheryll Tickle and Mikiko Tanaka},
  title = {Dimeric combinations of MafB, c-maf, c-Jun and c-Fos control the apoptosis–survival balance in limb patterning under BMP/FGF regulation},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100767942,
  author = {吉村慶人 and 伊藤武彦 and 野口英樹},
  title = {454配列に対応したab initio遺伝子予測ツールの開発},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100767941,
  author = {梶谷嶺 and 野口英樹 and 伊藤武彦},
  title = {新規ゲノムアセンブラー：Platanus},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100790195,
  author = {Natsuno Suda and Daisuke Shirakawa and Takehiko Itoh and Masashige Bando and Katsuhiko Shirahige and Kohsuke Kataoka and Cheryll Tickle and Mikiko Tanaka},
  title = {AP-1 transcription factors regulate the number of apoptotic cells in developing chick limb buds},
  booktitle = {},
  year = 2011,
}

@misc{CTT100815585,
  author = {岩崎博史 and 坪内英生 and 伊藤武彦 and 梶谷嶺 and ﾊﾟﾙﾊｯﾄﾏﾙﾀﾞﾝ and 韓　龍雲},
  title = {遺伝性乳癌卵巣癌症候群の治療薬のスクリーニング方法},
  howpublished = {公開特許},
  year = 2019,
  month  = {},
  note   = {特願2018-077857(2018/04/13), 特開2019-184500(2019/10/24)}
}