論文

• Katsura Igai, Manabu Itakura, Suguru Nishijima, Hiroto Tsurumaru, Wataru Suda, Takumi Tsutaya, Eriko Tomitsuka, Kiyoshi Tadokoro, Jun Baba, Shingo Odani, Kazumi Natsuhara, Ayako Morita, Minoru Yoneda, Andrew R. Greenhill1, Paul F. Horwood, Jun-Ichi Inoue, Moriya Ohkuma, Yuichi Hongoh, Taro Yamamoto, Peter Siba, Masahira Hattori, Kiwamu Minamisawa, Masahiro Umezaki. Nitrogen fixation and nifH diversity in human gut microbiota, Scientific Reports, Springer Nature, 6, 31942, Aug. 2016.
• Jun-Ichi Inoue, Kenshiro Ohshima, Wataru Suda, Mitsuo Sakamoto, Takao Iino, Satoko Noda, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes, Microbes and Environments, 30, 1, 44-50, Jan. 2015.
• Toshiaki Kudo, Tomomi Nakahara, Xiaochi Zhang, Shigeto Taniyama, Osamu Arakawa, Shinji Murase, Hideaki Nakata, Kenshiro Ohshima, Wataru Suda, Keiko KItamura, Toshiya Iida, Yumi Oshida, Tetsushi Inoue, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Draft genome sequences of Geomicrobium sp. strains JCM 19037,JCM 19038, JCM 19039, and JCM 19055, isolated from aquatic samples, Genome Announcements, vol. 2, no. 3, e00622-14, June 2014.
• Toshiaki Kudo, Ayumi Kawauchi, Tomomi Nakahara, Xiaochi Zhang, Shigeto Taniyama, Tomohiro Takatani, Osamu Arakawa, Kenshiro Ohshima, Wataru Suda, Keiko KItamura, Toshiya Iida, Takao Iino, Tetsushi Inoue, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Draft genome sequences of Vibrio sp. strains isolated from tetrodotoxin-bearing scavenging gastropod., Genome Announcements, vol. 2, no. 3, pp. e00623-14, June 2014.
• Toshiaki Kudo, Kazuaki Sakamoto, Masashi Akinaga, Ayumi Kawauchi, Tomomi Nakahara, Xiaochi Zhang, Akinori Yamada, Kenshiro Ohshima, Wataru Suda, Hirokazu Kuwahara, Nobuyuki Nakamura, Yuichi Nogi, Keiko KItamura, Masahiro Yuki, Toshiya Iida, Shigeharu Moriya, Tetsushi Inoue, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Draft genome sequences of cyclodextrin-producing alkaliphilic Bacillus strains JCM 19045, JCM 19046, and JCM 19047, vol. 2, no. 2, pp. e00211-14, Mar. 2014.
• Nakabachi A., Naruo Nikoh, Oshima K., Inoue H., Ohkuma M., Hongoh Y., Miyagishima S., Hattori M., Fukatsu T.. Horizontal gene acquisition of Liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector., PLoS ONE, 2013.
• Hideto Takami, Hideki Noguchi, Yoshihiro Takaki, Ikuo Uchiyama, Atsushi Toyoda, Shinro Nishi, Gab-Joo Chee, Wataru Arai, Takuro Nunoura, Takehiko Itoh, Masahira Hattori, Ken Takai. A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem, Plos One, Vol. 7, No. 1, Jan. 2012.  公式リンク  
  
• Tomomi Kuwahara, Yositoshi Ogura, Kenshiro Oshima, Ken Kurokawa, Tadasuke Ooka, Hideki Hirakawa, Takehiko Itoh, Haruyuki Nakayama-Imaohji, Minoru Ichimura, Kikuji Itoh, Chieko Ishifune, Yoichi Maekawa, Koji Yasutomo, Masahira Hattori, Tetsuya Hayashi. The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing, DNA Research, Vol. 18, No. 4, pp. 291-303, July 2011.  公式リンク  
  
• Atsushi Sato, Kenshiro Oshima, Hideki Noguchi, Masahiro Ogawa, Tadashi Takahashi, Tetsuya Oguma, Yasuji Koyama, Takehiko Itoh, Masahira Hattori, Yoshiki Hanya. Draft Genome Sequencing and Comparative Analysis of Aspergillus sojae NBRC4239, DNA Research, Vol. 18, No. 3, pp. 165-176, Apr. 2011.  公式リンク  
  
• Yoshihiro Nakao, Takeshi Kanamori, Takehiko Itoh, Yukiko Kodama, Sandra Rainieri, Norihisa Nakamura, Tomoio Shimonaga, Masahira Hattori, Toshihiko Ashikari. Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid, DNA Research, Vol. 16, No. 2, pp. 115-129, Mar. 2009.  公式リンク  
  
• Yuichi Hongoh, Vineet K. Sharma, Tulika Prakash, Satoko Noda, Hidehiro Toh, Todd D. Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Toyoda Atsushi, Masahira Hattori, Moriya Ohkuma. Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut, Science, 322, 1108-1109, Nov. 2008.
• Yuichi Hongoh, Vineet K. Sharma, Tulika Prakash, Satoko Noda, Todd D. Taylor, Toshiaki Kudo, yoshiyuki sakaki, Toyoda Atsushi, Masahira Hattori, Moriya Ohkuma. Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell, Proceedings of the National Academy of Sciences of the United States of America, 105, 5555-5560, Apr. 2008.
• Ken Kurokawa, Tomomi Kuwahara, Kenshiro Oshima, Hidehiro Toh, Atsushi Toyoda, Hideto Takami, Hidetoshi Morita, Vineet K. Sharma, Tulika P. Srivastava, Todd D. Taylor, Hideki Noguchi, Hiroshi Mori, Yoshitoshi Ogura, Dusko S. Ehrlich, Kikuji Itoh, Toshihisa Takagi, yoshiyuki sakaki, Tetsuya Hayashi, Masahira Hattori. Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes, DNA research, Oxford University Press, 14, 4, 169-181, Aug. 2007.
• Todd D. Taylor, Hideki Noguchi, Yasushi Totoki, Yoko Kuroki, Ken Dewar, Christine Lloyd, Tadayuki Takeda, Dae-Won Kim, Xinwei She, Karen F. Barlow, Toby Bloom, Elspeth Bruford, Jean L. Chang, Christina A. Cuomo, Evan Eichler, Michael G. FitzGerald, David B. Jaffe, LaButti Kurt, Robert Nicol, Hong-Seog Park, Christopher Seaman, Carrie Sougnez, Xiaoping Yang, Andrew R. Zimmer, Michael C. Zody, Bruce W. Birren, Chad Nusbaum, Asao Fujiyama, Masahira Hattori, Jane Rogers, Eric S. Lander, yoshiyuki sakaki. Human chromosome 11 DNA sequence and analysis including novel gene identification, Nature, Nature Publishing Group, 440, 7083, 497-500, Mar. 2006.
• Atsushi Toyoda, Todd D Taylor, Yoshiyuki Sakaki, Masahira Hattori. Identification of large ancient duplications associated with human gene deserts, Nature genetics, Nature Pub. Co., 37, 10, 1041-3, Oct. 2005.
• Atsushi Toyoda, Hideki Noguchi, Todd D. Taylor, Mathew T. Pletcher, Yoshiyuki Sakaki, Roger H. Reeves, Masahira Hattori. Comparative Genomic Sequence Analysis of the Human Chromosome 21 Down Syndrome Critical Region, Genome Research, Oxford University Press, 12, 9, 1323-1332, Sept. 2002.

国内会議発表 (査読なし・不明)

• 猪飼 桂, 板倉 学, 西嶋 傑, 鶴丸 博人, 須田亙, 蔦谷 匠, 冨塚 江利子, 田所 聖志, 馬場 淳, 小谷 真吾, 夏原 和美, 森田 彩子, 米田穰, 井上潤一, 大熊盛也, 本郷裕一, 山本 太郎, シーバ ピーター, 服部正平, 南澤 究, 梅崎 昌裕. ヒト腸内微生物叢における窒素固定活性とnifH遺伝子の多様性, 日本微生物生態学会第30回大会, Oct. 2015.

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