論文

• Kazuki Takakashi, Hirokazu Kuwahara, Yutaro Horikawa, Kazuki Izawa, Daiki Kato, Tatsuya Inagaki, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh. Emergence of putative energy parasites within Clostridia revealed by genome analysis of a novel endosymbiotic clade, The ISME Journal, Oxford University Press, Vol. 17, Issue 11, Page 1895-1906, Nov. 2023.
• Hirohito Aoki, Masahiro Yuki, Yuichi Hongoh, Yutaka YAMAGATA, Moriya Ohkuma. Agarose gel microcapsules enable easy-to-prepare, picolitre-scale, single-cell genomics, yielding high-coverage genome sequence, Scientific Reports, Vol. 12, No. 1, p. e17014, Oct. 2022.
• Kinjo Y., Bourguignon T., Hongoh Y., Lo N., Tokuda G., Ohkuma M.. Coevolution of metabolic pathways in Blattodea and their Blattabacterium endosymbionts, and comparisons with other insect-bacteria symbiose, Microbiology Spectrum, Vol. 10, no. 5, p. e0277922, Sept. 2022.
• Katsura Igai, Osamu Kitade, Jieyang Fu, Kazumi Omata, Takahiro Yonezawa, Moriya Ohkuma, Yuichi Hongoh. Fine-scale genetic diversity and putative ecotypes of oxymonad protists coinhabiting the hindgut of Reticulitermes speratus, Molecular Ecology, Vol. 31, Issue 4, pp. 1317-1331, Feb. 2022.
• Bourguignon T., Kinjo Y., Paula Villa-Martin, Nicholas V. Coleman, Qian Tang, Daej A. Arab, Zongqing Wang, Tokuda G., Hongoh Y., Ohkuma M., Simon Y.W. Ho, Simone Pigolotti, Lo N.. Increased mutation rate is linked to genome reduction in prokaryotes, Current Biology, Vol. 30, pp. 3848-3855, Oct. 2020.
• Takeuchi M., Kuwahara H., Murakami T., Takahashi K., Kajitani R., Toyoda A., Itoh T., Ohkuma M., Hongoh Y. Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut, The ISME Journal, Vol. 14, pp. 2288–2301, June 2020.
• Takumi Murakami, Syu Onouchi, Katsura Igai, Moriya Ohkuma, Yuichi Hongoh. Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis, FEMS Microbiology Ecology, Vol. 95, No. 2, p. fiy238, Feb. 2019.
• Yuniar Devi Utami, Hirokazu Kuwahara, Katsura Igai, Takumi Murakami, Kaito Sugaya, Takahiro Morikawa, Yuichi Nagura, Masahiro Yuki, Pinsurang Deevong, Tetsushi Inoue, Kumiko Kihara, Nathan Lo, Akinori Yamada, Moriya Ohkuma, Yuichi Hongoh. Genome analyses of uncultured TG2/ZB3 bacteria in ‘Margulisbacteria’ specifically attached to ectosymbiotic spirochetes of protists in the termite gut, The ISME Journal, Vol. 13, No. 2, pp. 455-467, Feb. 2019.
• Yukihiro Kinjo, Thomas Bourguignon, Kwei Jun Tong, Hirokazu Kuwahara, Sang Jin Lim, Kwang Bae Yoon, Shuji Shigenobu, Yung Chul Park, Christine A. Nalepa, Yuichi Hongoh, Moriya Ohkuma, Nathan Lo, Gaku Tokuda. Parallel and gradual genome erosion in the Blattabacterium endosymbionts of Mastotermes darwiniensis and Cryptocercus wood roaches, Genome Biology and Evolution, Vol. 10, No. 6, pp. 1622-1630, June 2018.
• Yuniar Devi Utami, Hirokazu Kuwahara, Takumi Murakami, Takahiro Morikawa, Kaito Sugaya, Kumiko Kihara, Masahiro Yuki, Nathan Lo, Pinsurang Deevong, Sasitorn Hasin, Warin Boonriam, Tetsushi Inoue, Akinori Yamada, Moriya Ohkuma, Yuichi Hongoh. Phylogenetic diversity and single-cell genome analysis of "Melainabacteria", a non-photosynthetic cyanobacterial group, in the termite gut, Microbes and Envitonments, Vol. 33, No. 1, pp. 50-57, Mar. 2018.
• Masahiro Yuki, Mitsuo Sakamoto, Hirokazu Kuwahara, Yuichi Hongoh, Moriya Ohkuma. Draft genome sequence of Lactococcus sp. strain Rs-Y01, isolated from the gut of the lower termite Reticulitermes speratus, Genome Announcements, Vol. 5, No. 38, p. e00999-17, Aug. 2017.
• Kazuki Izawa, Hirokazu Kuwahara, Kaito Sugaya, Nathan Lo, Moriya Ohkuma, Yuichi Hongoh. Discovery of ectosymbiotic Endomicrobium lineages associated with protists in the gut of stolotermitid termites, Environmental Microbiology Reports, Vol. 9, No. 4, pp. 411-418, Aug. 2017.
• Kuwahara H., Yuki M., Izawa K., Ohkuma M., Hongoh Y.. Genome of ‘Ca. Desulfovibrio trichonymphae’, an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut, The ISME Journal, Vol. 11, No. 3, pp. 766–776, Mar. 2017.
• Kazuki Izawa, Hirokazu Kuwahara, Kumiko Kihara, Masahiro Yuki, Nathan Lo, Takehiko Itoh, Moriya Ohkuma, Yuichi Hongoh. Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA, Genome biology and evolution, Oxford University Press, Vol. 8, No. 10, 3099-3107, Oct. 2016.
• Kazuki Izawa, Hirokazu Kuwahara, Kumiko Kihara, Masahiro Yuki, Nathan Lo, Moriya Ohkuma, Yuichi Hongoh. Comparison of intracellular “Ca. Endomicrobium trichonymphae” genomovars illuminates the requirement and decay of defense systems against foreign DNA, Genome Biology and Evolution, Oxford Academic, Vol. 8, No. 10, pp. 3099-3107, Sept. 2016.
• Katsura Igai, Manabu Itakura, Suguru Nishijima, Hiroto Tsurumaru, Wataru Suda, Takumi Tsutaya, Eriko Tomitsuka, Kiyoshi Tadokoro, Jun Baba, Shingo Odani, Kazumi Natsuhara, Ayako Morita, Minoru Yoneda, Andrew R. Greenhill1, Paul F. Horwood, Jun-Ichi Inoue, Moriya Ohkuma, Yuichi Hongoh, Taro Yamamoto, Peter Siba, Masahira Hattori, Kiwamu Minamisawa, Masahiro Umezaki. Nitrogen fixation and nifH diversity in human gut microbiota, Scientific Reports, Springer Nature, 6, 31942, Aug. 2016.
• Masahiro Yuki, Hirokazu Kuwahara, Masaki Shintani, Kazuki Izawa, Tomoyuki Sato, David Starns, Yuichi Hongoh, Moriya Ohkuma. Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose, Environmental Microbiology, 17, 12, 4942-4953, Dec. 2015.
• Moriya Ohkuma, Satoko Noda, Satoshi Hattori, Toshiya Iida, Masahiro Yuki, David Starns, Jun-Ichi Inoue, Alistair C. Darby, Yuichi Hongoh. Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist., Proceedings of the National Academy of Sciences of the United States of America, 12, 33, 10224-30, Aug. 2015.
• Ajeng K. Pramono, Mitsuo Sakamoto, Takao Iino, Yuichi Hongoh, Moriya Ohkuma. Dysgonomonas termitidis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus, International Journal of Systematic and Evolutionary Microbiology, 65, 2, 681-685, Feb. 2015.
• Jun-Ichi Inoue, Kenshiro Ohshima, Wataru Suda, Mitsuo Sakamoto, Takao Iino, Satoko Noda, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes, Microbes and Environments, 30, 1, 44-50, Jan. 2015.
• Toshiaki Kudo, Tomomi Nakahara, Xiaochi Zhang, Shigeto Taniyama, Osamu Arakawa, Shinji Murase, Hideaki Nakata, Kenshiro Ohshima, Wataru Suda, Keiko KItamura, Toshiya Iida, Yumi Oshida, Tetsushi Inoue, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Draft genome sequences of Geomicrobium sp. strains JCM 19037,JCM 19038, JCM 19039, and JCM 19055, isolated from aquatic samples, Genome Announcements, vol. 2, no. 3, e00622-14, June 2014.
• Toshiaki Kudo, Ayumi Kawauchi, Tomomi Nakahara, Xiaochi Zhang, Shigeto Taniyama, Tomohiro Takatani, Osamu Arakawa, Kenshiro Ohshima, Wataru Suda, Keiko KItamura, Toshiya Iida, Takao Iino, Tetsushi Inoue, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Draft genome sequences of Vibrio sp. strains isolated from tetrodotoxin-bearing scavenging gastropod., Genome Announcements, vol. 2, no. 3, pp. e00623-14, June 2014.
• Toshiaki Kudo, Kazuaki Sakamoto, Masashi Akinaga, Ayumi Kawauchi, Tomomi Nakahara, Xiaochi Zhang, Akinori Yamada, Kenshiro Ohshima, Wataru Suda, Hirokazu Kuwahara, Nobuyuki Nakamura, Yuichi Nogi, Keiko KItamura, Masahiro Yuki, Toshiya Iida, Shigeharu Moriya, Tetsushi Inoue, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Draft genome sequences of cyclodextrin-producing alkaliphilic Bacillus strains JCM 19045, JCM 19046, and JCM 19047, vol. 2, no. 2, pp. e00211-14, Mar. 2014.
• Satoshi Hattori, Yuichi Hongoh, Takashi Itoh, Pinsurang Deevong, Savitr Trakulnaleamsai, Napavarn Noparatnaraporn, Toshiaki Kudo, Moriya Ohkuma. Sporomusa intestinalis sp. nov., a homoacetogenic bacterium isolated from the gut of a higher termite, Termes comis (Termitinae), Journal of General and Applied Microbiology, Vol. 59, No. 4, p. 321-324, Sept. 2013.
• Atsushi Nakabachi, Reiko Ueoka, Kenshirou Oshima, Roberta Teta, Alfonso Mangoni, Mihaela Gurgui, Neil J. Oldham, Gerhild van Echten-Deckert, Keiko Okamura, Kohei Yamamoto, Hiromitsu Inoue, Moriya Ohkuma, Yuichi Hongoh, Shin-ya Miyagishima, Shouhei Hattori, Jörn Piel, Takema Fukatsu. Defensive bacteriome symbiont with a drastically reduced genome., Current Biology, Volume 23, 15, Page 1478-1484, Aug. 2013.
• Sato T., Hirokazu Kuwahara, Fujita K., Satoko Noda, Kihara K., Yamada A., Ohkuma M., Hongoh Y.. Intranuclear verrucomicrobial symbionts and evidence of lateral gene transfer to the host protist in the termite gut., The ISME Journal, 2013.
• Nakabachi A., Naruo Nikoh, Oshima K., Inoue H., Ohkuma M., Hongoh Y., Miyagishima S., Hattori M., Fukatsu T.. Horizontal gene acquisition of Liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector., PLoS ONE, 2013.
• Satoko Noda, Yuichi Hongoh, Tomoyuki Sato, Moriya Ohkuma. Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites, BMC Evolutionary Biology, 9, e158, July 2009.
• Tomoyuki Sato, Yuichi Hongoh, Satoko Noda, Satoshi Hattori, Sadaharu Ui, Moriya Ohkuma. Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut, Environmental Microbiology, Wiley Interscience, 11, 1007-1015, Apr. 2009.
• Moriya Ohkuma, Satoko Noda, Yuichi Hongoh, Christine C. Nalepa, Tetsushi Inoue. Inheritance and diversification of symbiotic trichonymphid flagellates from a common ancestor of termites and cockroach Cryptocercus, Proceedings of the Royal Society B, 276, 239-245, Jan. 2009.
• Yuichi Hongoh, Vineet K. Sharma, Tulika Prakash, Satoko Noda, Hidehiro Toh, Todd D. Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Toyoda Atsushi, Masahira Hattori, Moriya Ohkuma. Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut, Science, 322, 1108-1109, Nov. 2008.
• Yuichi Hongoh, Vineet K. Sharma, Tulika Prakash, Satoko Noda, Todd D. Taylor, Toshiaki Kudo, yoshiyuki sakaki, Toyoda Atsushi, Masahira Hattori, Moriya Ohkuma. Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell, Proceedings of the National Academy of Sciences of the United States of America, 105, 5555-5560, Apr. 2008.
• Jun-Ichi Inoue, Satoko Noda, Yuichi Hongoh, Sadaharu Ui, Moriya Ohkuma. Identification of endosymbiotic methanogens and ectosymbiotic spirochetes of gut protists of the termite Coptotermes formosanus, Microbes and Environments, 93, 94-97, Jan. 2008.
• Yuichi Hongoh, Tomoyuki Sato, Michael F. Dolan, Satoko Noda, Moriya Ohkuma. The motility symbiont of the termite-gut flagellate Caduceia versatilis is a member of the “Synergistes” group, Applied and Environmental Microbiology, 73, 6270-6276, Oct. 2007.
• Yuichi Hongoh, Tomoyuki Sato, Satoko Noda, Sadaharu Ui, Toshiaki Kudo, Moriya Ohkuma. Candidatus Symbiothrix dinenymphae: bristle-like Bacteroidales ectosymbionts of termite gut protists, Environmental Microbiology, Wiley Interscience, 9, 2631-2635, Oct. 2007.
• Akinori Yamada, Tetsushi Inoue, Satoko Noda, Yuichi Hongoh, Moriya Ohkuma. Evolutionary trend of phylogenetic diversity of nitrogen fixation genes in the gut community of wood-feeding termites, Molecular Ecology, 16, 3768-3777, Sept. 2007.
• Moriya Ohkuma, Tomoyuki Sato, Satoko Noda, Sadaharu Ui, Toshiaki Kudo, Yuichi Hongoh. The candidate phylum ‘Termite Group 1’ of bacteria: phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists, FEMS Microbiology Ecology, 60, 467-476, June 2007.
• Satoko Noda, Osamu Kitade, Tetsushi Inoue, Miho Kawai, Kanuka M., Hiroshima K., Yuichi Hongoh, Constantino R., Uys V., Zhong J., Toshiaki Kudo, Moriya Ohkuma. Coevolutionary history of a triplex symbiotic system of termites, their gut protists, and bacterial endosymbionts of the protists, Molecular Ecology, 16, 1257-1266, Mar. 2007.
• Yuichi Hongoh, Pinsurang Deevong, Satoshi Hattori, Tetsushi Inoue, Satoko Noda, Napavarn Noparatnaraporn, Toshiaki Kudo, Moriya Ohkuma. Phylogenetic diversity, localization, and cell morphologies of members of the candidate phylum TG3 and a subphylum in the phylum Fibrobacteres, recently discovered bacterial groups dominant in termite guts, Applied and Environmental Microbiology, 72, 6780-6788, Oct. 2006.
• Tetsushi Inoue, Yoko Takematsu, Akinori Yamada, Yuichi Hongoh, Johjima Toru, Shigeharu Moriya, Yupaporn Sornnuwat, Charunee Vongkaluang, Moriya Ohkuma, Toshiaki Kudo. Diversity and abundance of termites along an altitudinal gradients in Khao Kitchagoot National Park, Thailand, Journal of Tropical Ecology, 22, 609-612, Sept. 2006.
• Pinsurang Deevong, Yuichi Hongoh, Tetsushi Inoue, Savitr Trakulnaleamsai, Toshiaki Kudo, Napavarn Noparatnaraporn, Moriya Ohkuma. Effect of temporal preservation on molecular study of complex microbial community in the gut of the termite Microcerotermes sp., Microbes and Environments, 21, 78-85, Apr. 2006.
• Yuichi Hongoh, Lukkaew Ekpornprasit, Tetsushi Inoue, Shigeharu Moriya, Savitr Trakulnaleamsai, Moriya Ohkuma, Napavarn Noparatnaraporn, Toshiaki Kudo. Intracolony variation of bacterial gut microbiota in the fungus-growing termite Macrotermes gilvus, Molecular Ecology, 15, 505-516, Feb. 2006.
• Satoko Noda, Tetsushi Inoue, Yuichi Hongoh, Miho Kawai, Christine A. Nalepa, Charunee Vongkaluang, Toshiaki Kudo, Moriya Ohkuma. Identification and characterization of ectosymbionts of distinct lineages in Bacteroidales attached to flagellated protists in the gut of termites and a wood-feeding cockroach, Environmental Microbiology, 8, 11-20, Jan. 2006.
• Hideaki Nakajima, Yuichi Hongoh, Satoko Noda, Yasuhiko Yoshida, Ron Usami, Toshiaki Kudo, Moriya Ohkuma. Phylogenetic and morphological diversity of Bacteroidales members associated with gut wall of termites, Bioscience, Biotechnology and Biochemistry, 70, 211-218, Jan. 2006.
• Yuichi Hongoh, Pinsurang Deevong, Tetsushi Inoue, Savitr Trakulnaleamsai, Moriya Ohkuma, Charunee Vongkaluang, Noparatnaraporn, Toshiaki Kudo. Intra- and interspecific comparisons of bacterial diversity and community structure support coevolution of gut microbiota and termite host, Applied and Environmental Microbiology, 71, 11, 6590-6599, Nov. 2005.
• Hideaki Nakajima, Yuichi Hongoh, Ron Usami, Toshiaki Kudo, Moriya Ohkuma. Spatial distribution of bacterial phylotypes in the gut of the termite Reticulitermes speratus and bacterial community on the gut epithelium, FEMS Microbiology Ecology, 54, 2, 247-255, Oct. 2005.
• Taksawan Thongaram, Yuichi Hongoh, Saori Kosono, Moriya Ohkuma, Savitr Trakulnaleamsai, Napavarn Noparatnaraporn, Toshiaki Kudo. Comparison of bacterial communities in the alkaline gut segment among various species of higher termites, Extremophile, 9, 3, 229-238, June 2005.
• Tetsushi Inoue, Yuichi Hongoh, Chirasak Klanglaew, Yoko Takematsu, Charunee Vongkaluang, Moriya Ohkuma, Toshiaki Kudo. Plasticity and specificity of termite nest structure (Isoptera), Sociobiology, 45, 3, 671-678, 2005.

著書

• Yuichi Hongoh, Moriya Ohkuma. Termite gut flagellates and their methanogenic and eubacterial symbionts, (Endo)symbiotic Methanogenic Archaea (Microbiology Monographs 19, Oct. 2010.
• 本郷裕一, 大熊盛也. Single Cellのゲノム解析, 難培養微生物研究の 最新技術 II—ゲノム解析を中心とした最前線と将来展望—, シーエムシー出版, June 2009.
• 本郷裕一, 大熊盛也. 統計学的微生物群集構造の解析, 難培養微生物研究の 最新技術 II—ゲノム解析を中心とした最前線と将来展望—, シーエムシー出版, June 2009.

国際会議発表 (査読有り)

• Yuniar Devi Utami, Hirokazu Kuwahara, Katsura Igai, Takumi Murakami, Takahiro Morikawa, Kaito Sugaya, Masahiro Yuki, Akinori Yamada, Moriya Ohkuma, Yuichi Hongoh. Genome analyses of uncultured ZB3/TG2 bacteria (“Margulisbacteria”) attached to ectosymbiotic spirochetes of protist cells in the termite gut, The 17th International Symposium on Microbial Ecology, Aug. 2018.

国際会議発表 (査読なし・不明)

• Ajeng Pramono, Hirokazu Kuwahara, Takehiko Itoh, Toyoda Atsushi, Moriya Ohkuma, Akinori Yamada, Yuichi Hongoh. Bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut, Prorhinotermes japonicus (Isoptera: family Rhinotermitidae), The 5th International Conference on Biological Science, Sept. 2017.

国内会議発表 (査読なし・不明)

• 板垣優大, 高橋一樹, 雪真弘, 清水美智留, 村上匠, 大熊盛也, 本郷裕一. シロアリ腸内で優占するBetaproteobacteria綱細菌の1細胞ゲノム解析, 日本微生物生態学会第36回大会, Nov. 2023.
• 齋藤崇登, 室岡聡, 猪飼桂, 高橋一樹, 佐藤朋之, 村上匠, 大熊盛也, 本郷裕一. 他細菌種に特異的に付着共生するAlphaproteobacteria の形態とゲノム解析, 日本微生物生態学会第36回大会, Nov. 2023.
• Kazuki Takahashi, Hirokazu Kuwahara, Yuutarou Horikawa, Kazuki Izawa, Tatsuya Inagaki, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh. Discovery and evolution of obligately-intracellular parasites belonging to the class Clostridia, 日本微生物生態学会第36回大会, Nov. 2023.
• 金子真之, 大森樹生, 猪飼桂, 間渕貴子, 西原 亜理沙, 木原久美子, 吉村剛, 大熊盛也, 本郷裕一. シロアリ腸内原生生物細胞内共生メタン菌の生態とゲノム解析, 日本共生生物学会第７回大会, Nov. 2023.
• 大須賀奨, 高橋一樹, 猪飼桂, 雪真弘, 清水美智留, 桑原宏和, 村上匠, 大熊盛也, 本郷裕一. シロアリ腸内原生生物に細胞内共生するPlanctomycetota 門細菌の発見とゲノム解析, 日本微生物生態学会第36回大会, Nov. 2023.
• Fu Jieyang, Liu Yiting, 猪飼桂, 桑原宏和, 木原久美子, 村上匠, 大熊盛也, 本郷 裕一. シロアリ腸内原生生物Mixotricha paradoxa と2種の細胞表面付着共生細菌の共生機構の解析, 日本微生物生態学会第36回大会, Nov. 2023.
• 杉山奈緒, 高橋一樹, 関謙二郎, 堀川雄太郎, 佐藤朋之, 桑原宏和, 村上匠, 大熊盛也, 本郷裕一. シロアリ腸内原生生物細胞共生Mycoplasmatota 門細菌の生態とゲノム解析, 日本微生物生態学会第36回大会, Nov. 2023.
• 髙橋一樹, 桑原宏和, 堀川雄太郎, 伊澤和輝, 加藤大貴, 稲垣辰哉, 雪真弘, 大熊盛也, 本郷裕一. 細胞内寄生性クロストリディア綱細菌の発見と寄生体進化プロセスの解明, 第21回微生物研究会, Oct. 2023.
• Kazuki Takahashi, Hirokazu Kuwahara, Yuutarou Horikawa, Kazuki Izawa, Tatsuya Inagaki, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh. Parasitic lifestyle and genome evolution of novel endosymbiotic clostridia of the protists inhabiting the termite gut, 第96回日本細菌学会総会, Mar. 2023.
• 猪飼桂, 北出理, Fu Jieyang, 尾又 一実, 米澤 隆弘, 大熊盛也, 本郷裕一. シロアリ腸内共生原生生物群集におけるエコタイプ・シミュレーション解析, 日本微生物生態学会第34回大会, Oct. 2021.
• ウタミ ユニア デビ, 桑原宏和, 村上匠, 猪飼桂, 守川貴裕, 菅谷快斗, 雪真弘, 山田明徳, 大熊盛也, 本郷裕一. Genome analyses of non-photosynthetic cyanobacteria associated with protist cells in the termite gut, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 名倉有一, 桑原宏和, 原田 真実, 豊田敦, 大熊盛也, 本郷裕一. シロアリ腸内原生生物の核内に共生する未培養Verrucomicrobia門細菌の多様性とゲノム解析, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 小野内思有, 村上匠, 大熊盛也, 本郷裕一. 食材性オオゴキブリ腸内線虫の体表に共生する細菌群集, 第1回日本共生生物学会大会, Nov. 2017.
• Yuniar Devi Utami, Hirokazu Kuwahara, Kaito Sugaya, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh. Uncovering rare candidate bacterial phylum TG2 in the termite gut, 日本微生物生態学会第31回大会, Oct. 2016.
• 桑原宏和, 雪真弘, 伊澤和輝, 大熊盛也, 本郷裕一. シロアリ腸内原生生物に共生するDesulfovibrio属細菌のゲノム解析による3者間共生システムの解明, 日本微生物生態学会第31回大会, Oct. 2016.
• 伊澤和輝, 名倉有一, Nathan Lo, 大熊盛也, 本郷裕一. シロアリ腸内原生生物の細胞表面に共生する新規Endomicrobium属細菌, 日本微生物生態学会第31回大会, Oct. 2016.
• 伊澤和輝, 麥島雄太, 桑原宏和, 河合幹彦, 木原久美子, Nathan Lo, 雪真弘, 伊藤武彦, 大熊盛也, 本郷裕一. 対ファージ防衛機構が示すEndomicrobium属細胞内共生細菌の適応進化, 第18回日本進化学会大会, Aug. 2016.
• 猪飼 桂, 板倉 学, 西嶋 傑, 鶴丸 博人, 須田亙, 蔦谷 匠, 冨塚 江利子, 田所 聖志, 馬場 淳, 小谷 真吾, 夏原 和美, 森田 彩子, 米田穰, 井上潤一, 大熊盛也, 本郷裕一, 山本 太郎, シーバ ピーター, 服部正平, 南澤 究, 梅崎 昌裕. ヒト腸内微生物叢における窒素固定活性とnifH遺伝子の多様性, 日本微生物生態学会第30回大会, Oct. 2015.

その他の論文・著書など

• Yuichi Hongoh, Moriya Ohkuma. Termite gut flagellates and their methanogenic and eubacterial symbionts, (Endo)symbiotic Methanogenic Archaea Second Edition, Springer, Volume 19, pp. 55-80, Nov. 2018.
• 大熊盛也, 本郷裕一. シロアリ腸内微生物の多重共生, 生物の科学 遺伝, 63, 110-113, July 2009.
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