論文

• Kazuki Takakashi, Hirokazu Kuwahara, Yutaro Horikawa, Kazuki Izawa, Daiki Kato, Tatsuya Inagaki, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh. Emergence of putative energy parasites within Clostridia revealed by genome analysis of a novel endosymbiotic clade, The ISME Journal, Oxford University Press, Vol. 17, Issue 11, Page 1895-1906, Nov. 2023.
• Hirohito Aoki, Masahiro Yuki, Yuichi Hongoh, Yutaka YAMAGATA, Moriya Ohkuma. Agarose gel microcapsules enable easy-to-prepare, picolitre-scale, single-cell genomics, yielding high-coverage genome sequence, Scientific Reports, Vol. 12, No. 1, p. e17014, Oct. 2022.
• Yuniar Devi Utami, Hirokazu Kuwahara, Katsura Igai, Takumi Murakami, Kaito Sugaya, Takahiro Morikawa, Yuichi Nagura, Masahiro Yuki, Pinsurang Deevong, Tetsushi Inoue, Kumiko Kihara, Nathan Lo, Akinori Yamada, Moriya Ohkuma, Yuichi Hongoh. Genome analyses of uncultured TG2/ZB3 bacteria in ‘Margulisbacteria’ specifically attached to ectosymbiotic spirochetes of protists in the termite gut, The ISME Journal, Vol. 13, No. 2, pp. 455-467, Feb. 2019.
• Yuniar Devi Utami, Hirokazu Kuwahara, Takumi Murakami, Takahiro Morikawa, Kaito Sugaya, Kumiko Kihara, Masahiro Yuki, Nathan Lo, Pinsurang Deevong, Sasitorn Hasin, Warin Boonriam, Tetsushi Inoue, Akinori Yamada, Moriya Ohkuma, Yuichi Hongoh. Phylogenetic diversity and single-cell genome analysis of "Melainabacteria", a non-photosynthetic cyanobacterial group, in the termite gut, Microbes and Envitonments, Vol. 33, No. 1, pp. 50-57, Mar. 2018.
• Masahiro Yuki, Mitsuo Sakamoto, Hirokazu Kuwahara, Yuichi Hongoh, Moriya Ohkuma. Draft genome sequence of Lactococcus sp. strain Rs-Y01, isolated from the gut of the lower termite Reticulitermes speratus, Genome Announcements, Vol. 5, No. 38, p. e00999-17, Aug. 2017.
• Kuwahara H., Yuki M., Izawa K., Ohkuma M., Hongoh Y.. Genome of ‘Ca. Desulfovibrio trichonymphae’, an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut, The ISME Journal, Vol. 11, No. 3, pp. 766–776, Mar. 2017.
• Kazuki Izawa, Hirokazu Kuwahara, Kumiko Kihara, Masahiro Yuki, Nathan Lo, Takehiko Itoh, Moriya Ohkuma, Yuichi Hongoh. Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA, Genome biology and evolution, Oxford University Press, Vol. 8, No. 10, 3099-3107, Oct. 2016.
• Kazuki Izawa, Hirokazu Kuwahara, Kumiko Kihara, Masahiro Yuki, Nathan Lo, Moriya Ohkuma, Yuichi Hongoh. Comparison of intracellular “Ca. Endomicrobium trichonymphae” genomovars illuminates the requirement and decay of defense systems against foreign DNA, Genome Biology and Evolution, Oxford Academic, Vol. 8, No. 10, pp. 3099-3107, Sept. 2016.
• Masahiro Yuki, Hirokazu Kuwahara, Masaki Shintani, Kazuki Izawa, Tomoyuki Sato, David Starns, Yuichi Hongoh, Moriya Ohkuma. Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose, Environmental Microbiology, 17, 12, 4942-4953, Dec. 2015.
• Moriya Ohkuma, Satoko Noda, Satoshi Hattori, Toshiya Iida, Masahiro Yuki, David Starns, Jun-Ichi Inoue, Alistair C. Darby, Yuichi Hongoh. Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist., Proceedings of the National Academy of Sciences of the United States of America, 12, 33, 10224-30, Aug. 2015.
• Toshiaki Kudo, Kazuaki Sakamoto, Masashi Akinaga, Ayumi Kawauchi, Tomomi Nakahara, Xiaochi Zhang, Akinori Yamada, Kenshiro Ohshima, Wataru Suda, Hirokazu Kuwahara, Nobuyuki Nakamura, Yuichi Nogi, Keiko KItamura, Masahiro Yuki, Toshiya Iida, Shigeharu Moriya, Tetsushi Inoue, Yuichi Hongoh, Masahira Hattori, Moriya Ohkuma. Draft genome sequences of cyclodextrin-producing alkaliphilic Bacillus strains JCM 19045, JCM 19046, and JCM 19047, vol. 2, no. 2, pp. e00211-14, Mar. 2014.

国際会議発表 (査読有り)

• Yuniar Devi Utami, Hirokazu Kuwahara, Katsura Igai, Takumi Murakami, Takahiro Morikawa, Kaito Sugaya, Masahiro Yuki, Akinori Yamada, Moriya Ohkuma, Yuichi Hongoh. Genome analyses of uncultured ZB3/TG2 bacteria (“Margulisbacteria”) attached to ectosymbiotic spirochetes of protist cells in the termite gut, The 17th International Symposium on Microbial Ecology, Aug. 2018.

国内会議発表 (査読なし・不明)

• Kazuki Takahashi, Hirokazu Kuwahara, Yuutarou Horikawa, Kazuki Izawa, Tatsuya Inagaki, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh. Discovery and evolution of obligately-intracellular parasites belonging to the class Clostridia, 日本微生物生態学会第36回大会, Nov. 2023.
• 大須賀奨, 高橋一樹, 猪飼桂, 雪真弘, 清水美智留, 桑原宏和, 村上匠, 大熊盛也, 本郷裕一. シロアリ腸内原生生物に細胞内共生するPlanctomycetota 門細菌の発見とゲノム解析, 日本微生物生態学会第36回大会, Nov. 2023.
• 板垣優大, 高橋一樹, 雪真弘, 清水美智留, 村上匠, 大熊盛也, 本郷裕一. シロアリ腸内で優占するBetaproteobacteria綱細菌の1細胞ゲノム解析, 日本微生物生態学会第36回大会, Nov. 2023.
• 髙橋一樹, 桑原宏和, 堀川雄太郎, 伊澤和輝, 加藤大貴, 稲垣辰哉, 雪真弘, 大熊盛也, 本郷裕一. 細胞内寄生性クロストリディア綱細菌の発見と寄生体進化プロセスの解明, 第21回微生物研究会, Oct. 2023.
• Kazuki Takahashi, Hirokazu Kuwahara, Yuutarou Horikawa, Kazuki Izawa, Tatsuya Inagaki, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh. Parasitic lifestyle and genome evolution of novel endosymbiotic clostridia of the protists inhabiting the termite gut, 第96回日本細菌学会総会, Mar. 2023.
• ウタミ ユニア デビ, 桑原宏和, 村上匠, 猪飼桂, 守川貴裕, 菅谷快斗, 雪真弘, 山田明徳, 大熊盛也, 本郷裕一. Genome analyses of non-photosynthetic cyanobacteria associated with protist cells in the termite gut, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 桑原宏和, 雪真弘, 伊澤和輝, 大熊盛也, 本郷裕一. シロアリ腸内原生生物に共生するDesulfovibrio属細菌のゲノム解析による3者間共生システムの解明, 日本微生物生態学会第31回大会, Oct. 2016.
• Yuniar Devi Utami, Hirokazu Kuwahara, Kaito Sugaya, Masahiro Yuki, Moriya Ohkuma, Yuichi Hongoh. Uncovering rare candidate bacterial phylum TG2 in the termite gut, 日本微生物生態学会第31回大会, Oct. 2016.
• 伊澤和輝, 麥島雄太, 桑原宏和, 河合幹彦, 木原久美子, Nathan Lo, 雪真弘, 伊藤武彦, 大熊盛也, 本郷裕一. 対ファージ防衛機構が示すEndomicrobium属細胞内共生細菌の適応進化, 第18回日本進化学会大会, Aug. 2016.

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