@article{CTT100714375, author = {Kota Kasahara and Benson Ma and Kota Goto and Bhaskar Dasgupta and Junichi Higo and Ikuo Fukuda and Tadaaki Mashimo and Yutaka Akiyama and Haruki Nakamura}, title = {myPresto/omegagene: a GPU-accelerated molecular dynamics simulator tailored for enhanced conformational sampling methods with a non-Ewald electrostatic scheme}, journal = {Biophysics and Physicobiology}, year = 2016, } @inproceedings{CTT100766886, author = {後藤公太 and 大上雅史 and 石田貴士 and 秋山泰}, title = {配列相同性検索ツールGHOSTZ-GPUのMPI環境における高速化}, booktitle = {情報処理学会研究報告}, year = 2018, } @inproceedings{CTT100776753, author = {後藤公太 and 大上雅史 and 石田貴士 and 秋山泰}, title = {配列相同性検索ツールGHOSTZ-GPUのMPI環境における高速化}, booktitle = {研究報告バイオ情報学(BIO)}, year = 2018, } @inproceedings{CTT100715196, author = {Marina Yamasawa and Tomoya Fujii and Kota Goto and Masahito Ohue and Takashi Ishida and Kazuyuki Ishihara and Yutaka Akiyama}, title = {GPU/MPI Parallelization of Metagenomic Sequence Homology Search Tool and Its Application to Oral Metagenomics}, booktitle = {}, year = 2016, } @inproceedings{CTT100715197, author = {Kota Goto and Kota Kasahara and Masahito Ohue and Haruki Nakamura and Yutaka Akiyama}, title = {Accelerating SHAKE Calculation of myPresto/omegagene Molecular Dynamics Simulation on CPU/GPU heterogeneous environment}, booktitle = {}, year = 2016, } @inproceedings{CTT100710861, author = {後藤 公太 and 笠原 浩太 and 大上 雅史 and 中村 春木 and 秋山 泰}, title = {SHAKE法に着目した分子動力学ソフトウェアmyPresto/OmegageneのCPU・GPU混在環境における高速化}, booktitle = {研究報告バイオ情報学(BIO)}, year = 2016, }