"大上雅史,松崎由理,松崎裕介,佐藤智之,秋山泰","MEGADOCK：立体構造情報からの網羅的タンパク質間相互作用予測とそのシステム生物学への応用","情報処理学会数理モデル化と問題解決研究会","情報処理学会論文誌数理モデル化と応用（TOM）","情報処理学会","Vol. 3","No. 3","pp. 91-106",2010,Oct.
"Matsuzaki Yuri.,Ohue Masahito.,Matsuzaki Yusuke.,Sato Toshuyuki,Akiyama Yutaka","A computational screening system of protein-protein interactions: connecting protein structural information to biological pathway estimation","11th International Conference on Systems Biology (ICSB)",,,,,,2010,Oct.
"Masahito Ohue,Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","n silico prediction of PPI network with structure-based all-to-all docking","InCoB2010 - the 9th International Conference on Bioinformatics",,,,,,2010,Sept.
"川島一彦,佐々木智大,松崎裕","ペーパーブリッジコンテストーおもしろ理科教室",,"第65回土木学会全国大会",,"  CS1-003",,"  1-2",2010,Sept.
"大上雅史,松崎由理,松崎裕介,佐藤智之,秋山泰","MEGADOCK：立体構造情報からの網羅的タンパク質間相互作用予測とそのシステム生物学への応用","情報処理学会数理モデル化と問題解決研究会","研究報告数理モデル化と問題解決（MPS）","情報処理学会","Vol. 2010-MPS-78","No. 3","pp. 1-9",2010,May
"Masahito Ohue,Yusuke Matsuzaki,Yuri Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","MEGADOCK: An all-to-all protein-protein interaction prediction system -- Improving the accuracy using boosting and binding energy reranking.","The 2nd Biosupercomputing Symposium",,,,,,2010,Mar.
"大上雅史,松崎裕介,松崎由理,佐藤智之,秋山 泰","エネルギー計算に基づくリランキングとクラスタリングを用いた網羅的タンパク質間相互作用予測手法の提案","第2回データ工学と情報マネジメントに関するフォーラム(DEIM2010)","第2回データ工学と情報マネジメントに関するフォーラム(DEIM2010)",,,"  E4-4",,2010,Mar.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","A computational screening system of protein-protein interactions: connecting structural information to pathway estimation.","The 2nd Biosupercomputing Symposium",,,,,,2010,Mar.
"松崎裕介,大上雅史,松崎由理,佐藤智之,関嶋政和,秋山泰","タンパク質の特性に基づくunboundドッキングのための剛体予測手法の改良","情報処理学会 第20回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","Vol. 2010-BIO-20","No. 4","pp. 1-8",2010,Feb.
"大上雅史,松崎裕介,松崎由理,佐藤智之,秋山泰","リランキングを用いたタンパク質ドッキングの精度向上と網羅的タンパク質間相互作用予測への応用","情報処理学会 第20回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","Vol. 2010-BIO-20","No. 3","pp. 1-8",2010,Feb.
"Masahito Ohue,Yusuke Matsuzaki,Yuri Matsuzaki,Yutaka Akiyama","Improvement of all-to-all protein-protein interaction prediction system MEGADOCK","The 20th International Conference on Genome Informatics Workshop(GIW2009)","The 20th International Conference on Genome Informatics Workshop Poster Proceedings",,,,"  P033",2009,Dec.
"Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis",,"Journal of Bioinformatics and Computational Biology",,"Vol. 7","No. 6","  991-1012",2009,Dec.
"Yusuke Matsuzaki,Yuri Matsuzaki,Masakazu Sekijima,Yutaka Akiyama","Protein structure sampling based on molecular dynamics and improvement of docking prediction","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P10-99",2009,Nov.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","A computational screening system of protein-protein interactions using tertiary structure data: an application to signaling pathway analysis.","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P11-114",2009,Nov.
"Masahito Ohue,Yusuke Matsuzaki,Yuri Matsuzaki,Yutaka Akiyama","Improvement of all-to-all protein-protein interaction prediction system MEGADOCK","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P10-101",2009,Nov.
"松崎裕介,松崎由理,関嶋政和,秋山泰","分子動力学法に基づくタンパク質構造サンプリングとドッキング予測の改良","情報処理学会 第18回バイオ情報学研究会","情報処理学会研究報告","情報処理学会","Vol. 2009-BIO-18,","No. 1","pp. 1-6",2009,Sept.
"大上雅史,松崎裕介,松崎由理,秋山泰","網羅的タンパク質間相互作用予測システムにおける判別精度の改良","情報処理学会 第18回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","Vol. 2009-BIO-18","No. 3","pp. 1-8",2009,Sept.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis","The 10th International Conference on Systems Biology (ICSB 2009)",,,,,,2009,Sept.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","A computational screening system of protein-protein interactions using tertiary structure data: with application to pathway analysis","Joint Computational Science Workshop 2009",,,,,,2009,July
"大上雅史,松崎裕介,松崎由理,佐藤智之,秋山泰","物理化学的相互作用の導入による網羅的タンパク質間相互作用予測システムの高精度化","情報処理学会 第17回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","  2009-BIO-17","  11","  1-8",2009,May
"松崎 由理,松崎 裕介,大上雅史,佐藤 智之,秋山 泰","ドッキング後処理によるPPI検出システムの応用と評価?EGFRシグナル伝達系への適用にむけて","第8回データ解析融合ワークショップ（公開ワークショップ）",,,,,,2009,Mar.
"Yutaka Akiyama,Toshiyuki Sato,Yusuke Matsuzaki,Yuri Matsuzaki","MEGADOCK - A massively parallel software system for all-to-all protein docking analysis with pre-calculated Fourier library of protein structures","Biosupercomputing symposium (BSCS2008)",,,,,,2008,Dec.
"Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","In silico screening method of protein-protein interactions using all-to-all rigid docking and clustering: with application to pathway analysis","Biosupercomputing symposium (BSCS2008)",,,,,,2008,Dec.
"松崎 由理,松崎 裕介,佐藤 智之,秋山 泰","タンパク質ドッキング予測プログラムによるシグナル伝達系のタンパク質間相互作用解析","第13回バイオ情報学研究会","情報処理学会 研究報告",,"  2008","  58","  21-24",2008,June
"松崎 裕介,松崎 由理,佐藤 智之,秋山 泰","タンパク質間相互作用予測のためのドッキング後処理システムの開発","第13回バイオ情報学研究会","情報処理学会 研究報告",,"  2008","  58","  17-20",2008,June
"秋山 泰,松崎 裕介,佐藤 智之,藤原 康広,松崎 由理,小西 史一","形状相補性に基づくタンパク質間相互作用予測ソフトウェアと大規模並列計算機上での網羅的な予測環境の開発","第5回データ解析融合ワークショップ（公開ワークショップ）",,,,,,2008,Mar.
"松崎 由理,松崎 裕介,佐藤 智之,秋山 泰","細菌の走化性系への適用によるタンパク質間相互作用予測プログラムの評価","第5回データ解析融合ワークショップ（公開ワークショップ）",,,,,,2008,Mar.