"Yutaka Akiyama,Toshiyuki Sato,Yusuke Matsuzaki,Yuri Matsuzaki","MEGADOCK - A massively parallel software system for all-to-all protein docking analysis with pre-calculated Fourier library of protein structures","Biosupercomputing symposium (BSCS2008)",,,,,,2008,Dec.
"Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","In silico screening method of protein-protein interactions using all-to-all rigid docking and clustering: with application to pathway analysis","Biosupercomputing symposium (BSCS2008)",,,,,,2008,Dec.
"Yutaka Akiyama,Takahiro Ide,Fumikazu Konishi","A GPGPU-based ultra fast computer system for mapping short DNA fragments onto human/mouse full genome sequence","The 2008 Annual Conference of the Japanese Society for Bioinformatics (JSBi2008)",,,,,,2008,Dec.
"Tsukamoto K,Yoshikawa T,Hourai Y,Fukui K,Akiyama Y.","Development of an affinity evaluation and prediction system by using the shape complementarity characteristic between proteins",,"Journal of bioinformatics and computational biology",,"Vol. 6","No. 6","pp. 1133-1156",2008,Dec.
"Kouta Toshimoto,Kazuya Maeda,Yuichi Sugiyama,Yutaka Akiyama","Drug clearance pathways prediction system based on machine learning techniques","The 2008 Annual Conference of the Japanese Society for Bioinformatics (JSBi2008)",,,,,,2008,Dec.
"Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","Virtual screening of protein-protein interactions: an application to known signal transduction systems","The 2008 Annual Conference of the Japanese Society for Bioinformatics (JSBi2008)",,,,,,2008,Dec.
"Yutaka Akiyama,Toshiyuki Sato,Yusuke Matsuzaki,Yuri Matsuzaki","Megadock - a rapid screening system for all-to-all protein docking analysis with precalculated fourier library of protein structures","The 2008 Annual Conference of the Japanese Society for Bioinformatics (JSBi2008)",,,,,,2008,Dec.
"Yutaka Akiyama","Predicting protein-protein interactions with a peta-flops computer: Techniques and potential applications to systems biology research","International Symposium on Bioinformatics",,,,,,2008,Nov.
"Kouta Toshimoto,Makiko Kusama,Kazuya Maeda,Yuichi Sugiyama,Yutaka Akiyama","In silico prediction of major drug clearance pathways by machine learning techniques","23rd Annual Meeting of the Japanese Society for the Study of Xenobiotics",,,,,,2008,Oct.
"Kouta Toshimoto,Makiko Kusama,Kazuya Maeda,Yuichi Sugiyama,Yutaka Akiyama","In silico prediction of major drug clearance pathways by machine learning techniques","AHeDD2008/IPAB2008 Joint Symposium",,,,,,2008,Oct.
"Satoshi Matsuoka,Yutaka Akiyama,Akira Nukada,Toshio Endo,Yasuhiko Ogata,Fumikazu Konishi","HPC-GPGPU: Large-scale commodity accelerated clusters and its application to advanced structural proteomics","AHeDD2008/IPAB2008 Joint Symposium",,,,,,2008,Oct.
"Yutaka Akiyama,Takahiro Ide,Fumikazu Konishi","A GPGPU-based ultra fast sequence comparison system for mapping short DNA fragments onto human/mouse full genome sequence","AHeDD2008/IPAB2008 Joint Symposium",,,,,,2008,Oct.
"Kouta Toshimoto,Makiko Kusama,Kazuya Maeda,Yuichi Sugiyama,Yutaka Akiyama","In silico prediction of major drug clearance pathways by machine learning techniques","International Symposium on Pathway/Network to Disease and Drug Discovery (CBI2008)",,,,,,2008,Oct.
"Kazuya Maeda,Makiko Kusama,Kouta Toshimoto,Yuka Hirai,Satoki Imai,Koji Chiba,Yutaka Akiyama,Yuichi Sugiyama","Classification of major clearance pathways of drugs based on their physicochemical parameters","International Symposium on Pathway/Network to Disease and Drug Discovery (CBI2008)",,,,,,2008,Oct.
"Makiko Kusama,Kouta Toshimoto,Kazuya Maeda,Yuka Hirai,Satoki Imai,Koji Chiba,Yutaka Akiyama,Yuichi Sugiyama","Classification of major clearance pathways of drugs based on physicochemical parameters","23rd Annual Meeting of the Japanese Society for the Study of Xenobiotics",,,,,,2008,Oct.
"Makiko Kusama,Kouta Toshimoto,Kazuya Maeda,Yuka Hirai,Satoki Imai,Koji Chiba,Yutaka Akiyama,Yuichi Sugiyama","Classification of major clearance pathways of drugs based on physicochemical parameters","Recent progress in in silico ADME prediction,34th Mini-Symposium of Dept of Molecular Pharmacokinetics",,,,,,2008,Sept.
"Yutaka Akiyama,Takahiro Ide,Fumikazu Konishi","A GPGPU-based ultra fast computer system for mapping short DNA fragments onto human/mouse full genome sequence","The 3rd International Workshop on Approaches to Single-Cell Analysis",,,,,,2008,Sept.
"Yutaka Akiyama,Toshiyuki Sato,Yusuke Matsuzaki,Yuri Matsuzaki","Megadock - a rapid screening system for all-to-all protein docking analysis with pre-calculated fourier library of protein structures","1st Joint Workshop on Computational Science",,,,,,2008,July
"Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","Analysis of protein-protein interactions of signal transduction pathways using a docking prediction program","1st Joint Workshop on Computational Science",,,,,,2008,July
"Yusuke Matsuzaki,Yuri Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","Development of post-docking system for protein-protein interaction prediction","1st Joint Workshop on Computational Science",,,,,,2008,July
"年本 広太,草間 真紀子,前田 和哉,杉山 雄一,秋山 泰","医薬品の物理化学的特性に基づいた薬物動態プロファイリング (II)","第24回日本DDS学会",,,,,,2008,June
"小西史一,竹本千重,赤坂領吾,行木信一,秋山泰,横山茂之,豊田哲郎,村山和隆","結晶スクリーニング結果を活用した機械学習による結晶化条件の予測モデルアレイ","情報処理学会, バイオ情報学研究会, 電子情報通信学会, ニューロコンピューティング研究, 電子情報通信学会, 非線形問題研究会","情報処理学会 研究報告",,"Vol. 2008","No. 58","pp. 49-54",2008,June
"秋山 泰","パイロシーケンシング法における読み取りエラー発生シミュレータとその応用","第６回ライフサーベイヤシンポジウム",,,,,,2008,June
"年本 広太,草間 真紀子,前田 和哉,杉山 雄一,秋山 泰","機械学習を用いた薬物のクリアランス経路予測","第13回バイオ情報学研究会","情報処理学会 研究報告",,"  2008","  58","  43-48",2008,June
"松崎 由理,松崎 裕介,佐藤 智之,秋山 泰","タンパク質ドッキング予測プログラムによるシグナル伝達系のタンパク質間相互作用解析","第13回バイオ情報学研究会","情報処理学会 研究報告",,"  2008","  58","  21-24",2008,June
"松崎 裕介,松崎 由理,佐藤 智之,秋山 泰","タンパク質間相互作用予測のためのドッキング後処理システムの開発","第13回バイオ情報学研究会","情報処理学会 研究報告",,"  2008","  58","  17-20",2008,June
"草間 真紀子,平井 由香,前田 和哉,今井 覚己,千葉 康司,年本 広太,秋山 泰,杉山 雄一","医薬品の物理化学的特性に基づいた薬物動態プロファイリング (I)","第24回日本DDS学会",,,,,,2008,June
"Satoshi Matsuoka,Yutaka Akiyama","HPC-GPGPU: Large-scale commodity accelerated clusters and its application to advanced structural proteomics","Microsoft Science All-Hands-Meeting",,,,,,2008,Mar.
"Yutaka Akiyama","Large scale computing for bioinformatics","Virtual Laboratory based on GRID Technology",,,,,,2008,Mar.
"松崎 由理,松崎 裕介,佐藤 智之,秋山 泰","細菌の走化性系への適用によるタンパク質間相互作用予測プログラムの評価","第5回データ解析融合ワークショップ（公開ワークショップ）",,,,,,2008,Mar.
"Priyantha Wijayatunga,Yutaka Akiyama","On protein-protein interaction prediction with yeast two-hybrid experiment data and protein domain associations","第5回データ解析融合ワークショップ（公開ワークショップ）",,,,,,2008,Mar.
"秋山 泰,松崎 裕介,佐藤 智之,藤原 康広,松崎 由理,小西 史一","形状相補性に基づくタンパク質間相互作用予測ソフトウェアと大規模並列計算機上での網羅的な予測環境の開発","第5回データ解析融合ワークショップ（公開ワークショップ）",,,,,,2008,Mar.
"秋山泰","バイオインフォマティクスと大規模並列処理","ENDLESS DEBATE バイオ分野でペタフロップスコンピュータをいかに使いこなすか",,,,,,2008,Mar.
"秋山 泰","パイロシーケンシング法における読み取りエラー発生シミュレータとその応用","第５回ライフサーベイヤシンポジウム",,,,,,2008,
"Daisuke Tominaga,Yutaka Akiyama","High-throughput automated image processing system for cell array observations",,"Information and Media Technologies",,"  3","  1","  71-78",2008,