"Masahito Ohue,Yusuke Matsuzaki,Yuri Matsuzaki,Yutaka Akiyama","Improvement of all-to-all protein-protein interaction prediction system MEGADOCK","The 20th International Conference on Genome Informatics Workshop(GIW2009)","The 20th International Conference on Genome Informatics Workshop Poster Proceedings",,,,"  P033",2009,Dec.
"Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis",,"Journal of Bioinformatics and Computational Biology",,"Vol. 7","No. 6","  991-1012",2009,Dec.
"Shuji Suzuki,Yutaka Akiyama","Ultra fast short sequence alignment on GPU","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P3-22",2009,Nov.
"Yusei Owatari,Masakazu Sekijima,Yutaka Akiyama","Binding analysis of neuraminidase inhibitors by fragment MO calculation","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P7-74",2009,Nov.
"Kazushi Ikeda,Kouta Toshimoto,Makiko Kusama,Kazuya Maeda,Yuichi Sugiyama,Yutaka Akiyama","Prediction of Drug Clearance Pathway by Boosting Algorithm","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P6-69",2009,Nov.
"Youhei Namiki,Yutaka Akiyama","Correcting read errors on DNA sequences determined by Pyrosequencing","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P3-24",2009,Nov.
"Masahito Ohue,Yusuke Matsuzaki,Yuri Matsuzaki,Yutaka Akiyama","Improvement of all-to-all protein-protein interaction prediction system MEGADOCK","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P10-101",2009,Nov.
"Yusuke Matsuzaki,Yuri Matsuzaki,Masakazu Sekijima,Yutaka Akiyama","Protein structure sampling based on molecular dynamics and improvement of docking prediction","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P10-99",2009,Nov.
"Wisnu Ananta Kusuma,Yutaka Akiyama","Preliminary Study on de novo Sequence Assembly for Very Short Reads","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P3-23",2009,Nov.
"Kouta Toshimoto,Makiko Kusama,Kazuya Maeda,Yuichi Sugiyama,Yutaka Akiyama","In Silico Prediction System of Major Drug Clearance Pathways by Feature Selection and Support Vector Machines","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P6-63",2009,Nov.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","A computational screening system of protein-protein interactions using tertiary structure data: an application to signaling pathway analysis.","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P11-114",2009,Nov.
"Shun Hotta,Kouta Toshimoto,Kazushi Ikeda,Makiko Kusama,Kazuya Maeda,Yuichi Sugiyama,Yutaka Akiyama","A web-based system for clearance pathway prediction","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P6-53",2009,Nov.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis","The 10th International Conference on Systems Biology (ICSB 2009)",,,,,,2009,Sept.
"松崎裕介,松崎由理,関嶋政和,秋山泰","分子動力学法に基づくタンパク質構造サンプリングとドッキング予測の改良","情報処理学会 第18回バイオ情報学研究会","情報処理学会研究報告","情報処理学会","Vol. 2009-BIO-18,","No. 1","pp. 1-6",2009,Sept.
"大上雅史,松崎裕介,松崎由理,秋山泰","網羅的タンパク質間相互作用予測システムにおける判別精度の改良","情報処理学会 第18回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","Vol. 2009-BIO-18","No. 3","pp. 1-8",2009,Sept.
"尾渡裕成,関嶋政和,秋山泰","フラグメントMO法によるノイラミニダーゼ阻害薬の結合性解析","情報処理学会 第18回バイオ情報学研究会","情報処理学会研究報告","情報処理学会","Vol. 2009-BIO-18","No. 4","pp. 1-7",2009,Sept.
"秋山泰","バイオインフォマティクスは複雑系を説明する","第61回日本生物工業学会大会","第61回日本生物工業学会大会講演要旨集","社団法人 日本生物工学会","Vol. 61","No. 3S15p02","p. 293",2009,Aug.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","A computational screening system of protein-protein interactions using tertiary structure data: with application to pathway analysis","Joint Computational Science Workshop 2009",,,,,,2009,July
"秋山 泰","HPCに支えられてきたバイオインフォマティクス研究","第５０回 超並列計算研究会",,,,,,2009,May
"並木洋平,秋山泰","パイロシーケンシング法で決定されたDNA配列の読み取り誤差の訂正","情報処理学会 第17回バイオ情報学研究会","情報処理学会バイオ情報学研究会研究報告","情報処理学会","  17","  12",,2009,May
"池田和史,年本広太,草間真紀子,前田和哉,杉山雄一,秋山泰","ブースティングによる薬物クリアランス経路予測","情報処理学会 第17回バイオ情報学研究会","情報処理学会バイオ情報学研究会研究報告","情報処理学会","  17","  10",,2009,May
"大上雅史,松崎裕介,松崎由理,佐藤智之,秋山泰","物理化学的相互作用の導入による網羅的タンパク質間相互作用予測システムの高精度化","情報処理学会 第17回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","  2009-BIO-17","  11","  1-8",2009,May
"秋山泰","バイオインフォマティクスの最新動向 ?生物情報解析と音響学の隠れたハーモニー?","日本音響学会春季研究発表会",,,,,,2009,Mar.
"秋山泰","GPUによる超高速処理?配列マッピングとタンパク質ドッキングへの応用?","第２回東工大生命情報学セミナー",,,,,,2009,Mar.
"松崎 由理,松崎 裕介,大上雅史,佐藤 智之,秋山 泰","ドッキング後処理によるPPI検出システムの応用と評価?EGFRシグナル伝達系への適用にむけて","第8回データ解析融合ワークショップ（公開ワークショップ）",,,,,,2009,Mar.