"並木洋平,秋山泰","最長共通部分列に基づくDNA配列の高速クラスタリング",,"情報処理学会研究報告バイオ情報学(BIO)",,"vol. 2010-BIO-23(24)",,"pp. 1-7",2010,Dec.
"Matsuzaki Yuri.,Uchikoga Nobuyuki.,Ohue Masahito.,Ishida Takashi.,Akiyama Yutaka","Exhaustive protein-protein interaction prediction with MEGADOCK and its application to signaling pathway estimation","Asia Hub for e-Drug Discovery (AHeDD) Symoposium 2010",,,,,,2010,Dec.
"Yutaka Akiyama","Exhaustive Protein-Protein Interaction Network Prediction by MEGADOCK","AHeDD 2010 meeting",,,,,,2010,Dec.
"Masahito Ohue,Yuri Matsuzaki,Yutaka Akiyama","Development of a Protein-RNA Interaction Prediction Method Based on a Docking Calculation","The 2010 Annual Conference of the Japanese Society for Bioinformatics (JSBi2010)",,,,,,2010,Dec.
"Nobuyuki Uchikoga,Takatsugu Hirokawa,Yutaka Akiyama","Post-Doking Analysis with Interaction FingerPrint","Asia Hub for e-Drug Discovery (AHeDD) Symoposium 2010",,,,,,2010,Dec.
"Yutaka Akiyama,Yuri Matsuzaki,Nobuyuki Uchikoga,Masahito Ohue","Exhaustive protein-protein interaction network prediction by using MEGADOCK",,"BioSupercomputing Newsletter","Computational Science Research Program, RIKEN Research Cluster for Innovation","Vol. 3",,"pp. 8",2010,Dec.
"Takashi Ishida,Yutaka Akiyama","GPU-Acceleration of Protein Tertiary Structure Prediction based on a Fragment Assembly Simulation","CASP9 meeting",,,,,,2010,Dec.
"鈴木 脩司,石田 貴士,秋山 泰","FM-indexを用いた高速な配列相同性検索ツールの開発",,"情報処理学会研究報告バイオ情報学(BIO)",,"vol. 2010-BIO-23(20)",,"pp. 1-6",2010,Dec.
"秋山泰","MEGADOCK: Ultra Fast Structure Based Protein-Protein Interaction Prediction System","Global COE CompView シンポジウム",,,,,,2010,Nov.
"松崎由理,大上雅史,内古閑伸之,石田貴士,秋山 泰","MEGADOCKによるタンパク質間相互作用予測?システム生物学への応用?",,"TSUBAME e-Science Journal","東京工業大学 学術国際情報センター","vol. 2","No. 2","pp. 14-18",2010,Nov.
"Naomi Wakayama,Kouta Toshimoto,Shun Hotta,Kazuya Maeda,Makiko Kusama,Satashi Imai,Yutaka Akiyama","Evaluation of in silico prediction method of drug clearance pathways from simple physicochemical parameters","日本薬物動態学会 第25回年会",,,,,,2010,Oct.
"Matsuzaki Yuri.,Ohue Masahito.,Matsuzaki Yusuke.,Sato Toshuyuki,Akiyama Yutaka","A computational screening system of protein-protein interactions: connecting protein structural information to biological pathway estimation","11th International Conference on Systems Biology (ICSB)",,,,,,2010,Oct.
"Shun Hotta,Kouta Toshimoto,Kazushi Ikeda,Makiko Kusama,Kazuya Maeda,Yuichi Sugiyama,Yutaka Akiyama","Construction of a web-based system for the prediction of major clearance pathway of drugs from their physicochemical properties","25th JSSX Annual Meeting in Tokyo",,,,,,2010,Oct.
"秋山泰","Large-scale Bioinformatics Applications on Multi-node GPU","IPAB沖縄ワークショップ Seeds and Needs for Large Scale Computing 2010",,,,,,2010,Oct.
"Kazushi Ikeda,Kazuya Maeda,Atsushi Ose,Yuichi Sugiyama,Yutaka Akiyama","In silico prediction of substrates of drug transporters based on support vector machine and feature selection","日本薬物動態学会 第25回年会",,,,,,2010,Oct.
"大上雅史,松崎由理,松崎裕介,佐藤智之,秋山泰","MEGADOCK：立体構造情報からの網羅的タンパク質間相互作用予測とそのシステム生物学への応用","情報処理学会数理モデル化と問題解決研究会","情報処理学会論文誌数理モデル化と応用（TOM）","情報処理学会","Vol. 3","No. 3","pp. 91-106",2010,Oct.
"Masahito Ohue,Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","n silico prediction of PPI network with structure-based all-to-all docking","InCoB2010 - the 9th International Conference on Bioinformatics",,,,,,2010,Sept.
"Wisnu Ananta Kusuma,Yutaka Akiyama","Design and simulation of hybrid de novo DNA sequence assembly for large eukaryotic genome","The 2010 International Conferences on Parallel and Distributed Processing Techniques and Applications (PDPTA 2010)",,,,,,2010,July
"鈴木脩司,石田貴士,秋山泰","GPUによるDNA断片配列の高速マッピング",,"情報処理学会研究報告バイオ情報学(BIO)",,"vol. 2010-BIO-21(23)",,"pp. 1-6",2010,June
"石田貴士,秋山泰","単純ベイズ確率モデルの導入による天然変性蛋白質領域予測の改良",,"情報処理学会研究報告バイオ情報学(BIO)",,"Vol. 21","No. 34","pp. 1-6",2010,June
"堀田駿,年本広太,池田和史,草間真紀子,前田和哉,杉山雄一,秋山泰","ウェブアプリケーションによるクリアランス経路予測","情報処理学会 第21回バイオ情報学研究会","情報処理学会研究報告",,"Vol. 2010-BIO-21","No. 20","pp. 1-8",2010,June
"鈴木脩司,石田貴士,秋山泰","GPUによるDNA断片配列の高速マッピング","先進的計算基盤システムシンポジウムSACSIS2010","先進的計算基盤システムシンポジウムSACSIS2010論文集",,,,"pp. 137-138",2010,May
"大上雅史,松崎由理,松崎裕介,佐藤智之,秋山泰","MEGADOCK：立体構造情報からの網羅的タンパク質間相互作用予測とそのシステム生物学への応用","情報処理学会数理モデル化と問題解決研究会","研究報告数理モデル化と問題解決（MPS）","情報処理学会","Vol. 2010-MPS-78","No. 3","pp. 1-9",2010,May
"Kusama M,Toshimoto K,Maeda K,Hirai Y,Imai S,Chiba K,Akiyama Y,Sugiyama Y","In silico classification of major clearance pathways of drugs with their physiochemical parameters.",,"Drug Metabolism and Disposition",,"vol. 38","no. 8","pp. 1362-1370",2010,Apr.
"大上雅史,松崎裕介,松崎由理,佐藤智之,秋山 泰","エネルギー計算に基づくリランキングとクラスタリングを用いた網羅的タンパク質間相互作用予測手法の提案","第2回データ工学と情報マネジメントに関するフォーラム(DEIM2010)","第2回データ工学と情報マネジメントに関するフォーラム(DEIM2010)",,,"  E4-4",,2010,Mar.
"Takashi Ishida,Yutaka Akiyama","GPU-Acceleration of de novo Protein Tertiary Structure Prediction","The 2nd Biosupercomputing Symposium",,,,,,2010,Mar.
"年本 広太,草間 真紀子,池田 和史,堀田 駿,前田 和哉,杉山 雄一,秋山 泰","SVMを用いた薬物クリアランス経路予測システムの開発―複数経路予測への拡張と外部データによる評価―","情報処理学会研究報告バイオ情報学(BIO)",,,"vol. 2010-BIO-20(8)",,"pp. 1-8.",2010,Mar.
"秋山 泰","MEGADOCKの新機能と開発状況","第１０回データ解析融合ワークショップ",,,,,,2010,Mar.
"Masahito Ohue,Yusuke Matsuzaki,Yuri Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","MEGADOCK: An all-to-all protein-protein interaction prediction system -- Improving the accuracy using boosting and binding energy reranking.","The 2nd Biosupercomputing Symposium",,,,,,2010,Mar.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","A computational screening system of protein-protein interactions: connecting structural information to pathway estimation.","The 2nd Biosupercomputing Symposium",,,,,,2010,Mar.
"大上雅史,松崎裕介,松崎由理,佐藤智之,秋山泰","リランキングを用いたタンパク質ドッキングの精度向上と網羅的タンパク質間相互作用予測への応用","情報処理学会 第20回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","Vol. 2010-BIO-20","No. 3","pp. 1-8",2010,Feb.
"松崎裕介,大上雅史,松崎由理,佐藤智之,関嶋政和,秋山泰","タンパク質の特性に基づくunboundドッキングのための剛体予測手法の改良","情報処理学会 第20回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","Vol. 2010-BIO-20","No. 4","pp. 1-8",2010,Feb.
"池田 和史,前田 和哉,尾瀬 淳,杉山 雄一,秋山泰","計算機によるサポートベクターマシンと特徴選択を用いた薬物トランスポーター基質予測",,"日本薬物動態学会年会講演要旨集","日本薬物動態学会","Vol. 25",,"pp. 327-327",2010,
"若山 直美,年本 広太,堀田 駿,前田 和哉,草間 真紀子,今井 覚,秋山泰,杉山 雄一","薬物排泄経路予測法の評価",,"日本薬物動態学会年会講演要旨集","日本薬物動態学会","Vol. 25",,"pp. 118-118",2010,