"Masahito Ohue,Takehiro Shimoda,Shuji suzuki,Yuri Matsuzaki,Takashi Ishida,Yutaka Akiyama","MEGADOCK 4.0: an ultra?high-performance protein-protein docking software for heterogeneous supercomputers","GIW/ISCB-Asia 2014",,,,,,2014,Dec.
"年本 広太,若山 直美,堀田駿,前田 和哉,石田 貴士,秋山 泰,杉山 雄一","機械学習を用いた 9 つの主要な in vivo 薬物クリアランス経路の in silico 予測","日本動物実験代替法学会 第27回大会",,,,,,2014,Dec.
"Masahiro Yano,Hiroshi Mori,Yutaka Akiyama,Takuji Yamada,Ken Kurokawa","CLAST: CUDA implemented large-scale alignment search tool",,"BMC Bioinformatics 2014",,"  15","  406",,2014,Dec.
"Masahito Ohue,Takehiro Shimoda,Shuji Suzuki,Yuri Matsuzaki,Takashi Ishida,Yutaka Akiyama","MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers","IIBMP2014","Bioinformatics",,"Volume 30","Issue 22","page 3281-3283",2014,Nov.
"Masahito Ohue,Takehiro Shimoda,Shuji Suzuki,Yuri Matsuzaki,Takashi Ishida,Yutaka Akiyama","The MEGADOCK Project: high-performance protein-protein interaction prediction tools on supercomputing environments","The Asia hub for e-drug discovery symposium 2014 (AHeDD' 2014)",,,,,,2014,Nov.
"Takashi Ishida,Kozue Hasumi,Yutaka Akiyama","iNTRODB: database for NTDs drug target protein selection","The Asia hub for e-drug discovery symposium 2014 (AHeDD' 2014)",,,,,,2014,Nov.
"大上雅史,松崎由理,石田貴士,秋山泰","タンパク質とペプチドのドッキング計算","生命情報科学若手の会 第6回研究会",,,,,,2014,Oct.
"内古閑伸之,松崎由理,大上雅史,広川貴次,秋山泰","Analysis of properties of protein-protein interaction surface areas involved in more near-native conmplexes by Re-docking scheme","第52回日本生物物理学会年会",,,,,,2014,Sept.
"大上雅史,松崎由理,内古閑伸之,石田貴士,秋山泰","MEGADOCK: a high-performance protein-protein interaction prediction tool on supercomputing environments","第52回日本生物物理学会年会",,,,,,2014,Sept.
"Masahito Ohue,Takehiro Shimoda,Shuji Suzuki,Yuri Matsuzaki,Takashi Ishida,Yutaka Akiyama","The MEGADOCK Project: high-performance protein-protein interaction prediction tools on supercomputing environments","Biophysical Society Thematic Meeting Modeling of Biomolecular Systems Interactions, Dynamics, and Allostery: Bridging Experiments and Computations",,,,,,2014,Sept.
"Suzuki, S,Ishida, T,Akiyama, Y","GHOSTX: An improved sequence homology search algorithm using a query suffix array and a database suffix array",,"PLoS ONE",,"Vol. 6","No. 9","  e103833",2014,Aug.
"Ohue, M.,Shimoda, T.,Suzuki, S.,Matsuzaki, Y.,Ishida, T.,Akiyama, Y.","MEGADOCK 4.0: an ultra?high-performance protein?protein docking software for heterogeneous supercomputers",,"Bioinformatics","Oxford University Press","Vol. 30","No. 22","pp. 3281-3283",2014,Aug.
"Yuki Komatsu,Takashi Ishida,Yutaka Akiyama","Metagenomic Phylogenetic Classification Using Improved Na?ve Bayes","the Tenth International Conference on Intelligent Computing (ICIC 2014)",,,,,,2014,Aug.
"Ban, T.,Ishida, T.,Akiyama, Y.","Improvement of a conformational search on protein-ligand docking based on optimal arrangement of multiple small search grids","The 2014 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'14)",,,,,,2014,July
"柳澤 渓甫,石田 貴士,秋山泰","半教師付き学習を用いた薬物クリアランス経路予測 (情報論的学習理論と機械学習)",,"電子情報通信学会技術研究報告 = IEICE technical report : 信学技報","一般社団法人電子情報通信学会","Vol. 114","No. 105","pp. 55-60",2014,June
"蓮実 梢,石田 貴士,秋山 泰","パスウェイ情報を用いた顧みられない熱帯病 創薬支援のための統合データベースiNTRODBの改良","情報処理学会 第38回バイオ情報学研究会","情報処理学会研究報告",,"  2014-BIO-38",,,2014,June
"青山 健人,角田 将典,松崎 由理,石田 貴士,秋山 泰","エクソーム解析パイプラインの京コンピュータ上での大規模並列化","情報処理学会第38回バイオ情報学研究会","情報処理学会研究報告",,"  2014-BIO-38",,,2014,June
"Yutaka Akiyama","Development of an Ultra-Fast Computing Pipeline for Metagenome Analysis on Supercomputers","“Meeting Modern Life Science Challenges Through Computational Bioscience” CBRC Inauguration Symposium",,,,,,2014,June
"柳澤 渓甫,石田貴士,秋山泰","半教師付き学習を用いた薬物クリアランス経路予測",,"研究報告バイオ情報学（BIO）","一般社団法人情報処理学会","Vol. 2014","No. 10","pp. 1-6",2014,June
"大上 雅史,下田 雄大,松崎由理,石田貴士,秋山泰","大規模GPUクラスタによるタンパク質ドッキング計算システム (ニューロコンピューティング)",,"電子情報通信学会技術研究報告 = IEICE technical report : 信学技報","一般社団法人電子情報通信学会","Vol. 114","No. 104","pp. 173-176",2014,June
"大上雅史,下田 雄大,松崎由理,石田貴士,秋山泰","大規模GPUクラスタによるタンパク質ドッキング計算システム",,"研究報告バイオ情報学（BIO）","一般社団法人情報処理学会","Vol. 2014-BIO-38","No. 32","pp. 1-4",2014,June
"柳澤 渓甫,石田貴士,秋山泰","半教師付き学習を用いた薬物クリアランス経路予測 (ニューロコンピューティング)",,"電子情報通信学会技術研究報告 = IEICE technical report : 信学技報","一般社団法人電子情報通信学会","Vol. 114","No. 104","pp. 55-60",2014,June
"柳澤 渓甫,石田 貴士,秋山泰","半教師付き学習を用いた薬物クリアランス経路予測",,"研究報告数理モデル化と問題解決（MPS）","一般社団法人情報処理学会","Vol. 2014","No. 10","pp. 1-6",2014,June
"大上 雅史,下田 雄大,松崎由理,石田 貴士,秋山泰","大規模GPUクラスタによるタンパク質ドッキング計算システム",,"研究報告数理モデル化と問題解決（MPS）","一般社団法人情報処理学会","Vol. 2014","No. 32","pp. 1-4",2014,June
"大上 雅史,下田 雄大,松崎由理,石田 貴士,秋山泰","大規模GPUクラスタによるタンパク質ドッキング計算システム (情報論的学習理論と機械学習)",,"電子情報通信学会技術研究報告 = IEICE technical report : 信学技報","一般社団法人電子情報通信学会","Vol. 114","No. 105","pp. 173-176",2014,June
"Masahito Ohue,Yuri Matsuzaki,Nobuyuki Uchikoga,Takashi Ishida,Yutaka Akiyama","MEGADOCK: An all-to-all protein-protein interaction prediction system using tertiary structure data",,"Protein and Peptide Letters","Bentham Science","Volume 21","Issue 8","Page 766-778",2014,June
"Shuji Suzuki,Takashi Ishida,Yutaka Akiyama","Accelerating identification of frequent k-mers in DNA sequences with GPU","GPU Technology Conference 2014 (GTC2014)",,,,"No. P4190",,2014,Mar.
"秋山 泰","大規模メタゲノム解析向け超並列相同性検索パイプラインの構築","「知の創出を支える次世代IT基盤拠点」 生命科学のビッグデータ研究会",,,,,,2014,Mar.
"伴兼弘,石田貴士,秋山泰","蛋白質-化合物ドッキングにおけるグリッドの分散配置による配座探索の改良","第37回バイオ情報学研究会","情報処理学会研究報告",,"vol. 2014-BIO-37","no. 4","pp. 1-7",2014,Mar.
"Nobuyuki Uchikoga,Yuri Matsuzaki,Masahito Ohue,Takatsugu Hirokawa,Yutaka Akiyama","Re-docking scheme to explore docking search space by using interaction profiles","Biophysical Society 58th Annual Meeting",,,,,,2014,Feb.
"大上雅史,下田雄大,松崎由理,内古閑伸之,鈴木脩司,石田貴士,秋山泰","MEGADOCK 4.0: mega-dock per dayへの道のり",,"生命情報科学若手の会 第5回研究会",,,,,2014,Feb.
"Yutaka Akiyama","Development of an Ultra-Fast Computing Pipeline for Metagenome Analysis on TSUBAME2.5 and K-computer","The Japanese Extreme Big Data Projects Workshop",,,,,,2014,Feb.
"Yutaka Akiyama","Development of an Ultra-Fast Computing Pipeline for Metagenome Analysis on Supercomputers","KAUST bioinformatics seminar",,,,,,2014,Feb.
"You H,Kim GE,Na CH,Lee S,Lee CJ,Cho KH,Akiyama Y,Ishida T,No KT.","An empirical model for gas phase acidity and basicity estimation",,"SAR and QSAR in Environmental Research",,"Vol. 25","No. 2","pp. 91-115",2014,Feb.
"Yuri Matsuzaki,Nobuyuki Uchikoga,Masahito Ohue,Takashi Ishida,Yutaka Akiyama","Prediction of protein-protein interactions based on tertiary structures and transcription information","Biophysical Society 58th Annual Meeting",,,,,,2014,Feb.
"Toshimoto K,Wakayama N,Kusama M,Maeda K,Sugiyama Y,Akiyama Y","In silico prediction of major drug clearance pathways by support vector machines with feature-selected descriptors",,"Drug Metabolism and Disposition",,"  42","  11","  1811-9",2014,
"Satoshi Matsuoka,Hitoshi Sato,Osamu Tatebe,Michihiro Koibuchi,Ikki Fujiwara,Shuji Suzuki,Masanori Kakuta,Takashi Ishida,Yutaka Akiyama,Toyotaro Suzumura,Koji Ueno,Hiroki Kanezashi,Takemasa Miyoshi.","Extreme Big Data (EBD): Next Generation Big Data Infrastructure Technologies Towards Yottabyte/Year",,"Supercomputing frontiers and innovations",,"Vol. 1","No. 2","pp. 89-107",2014,