"Nobuyuki Uchikoga,Yuri Matsuzaki,Masahito Ohue,Takatsugu Hirokawa,Yutaka Akiyama","Analysis of protein docking decoys in terms of physicochemical properties of protein surfaces using rigid-body docking process","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"Yuri Matsuzaki,Masahito Ohue,Nobuyuki Uchikoga,Takashi Ishida,Yutaka Akiyama","MEGADOCK: A high-performance protein-protein interaction prediction software for petascale supercomputing environments","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"Shuntaro Chiba,Kazuyoshi Ikeda,Takashi Ishida,M. Michael Gromiha,Y-h. Taguchi,Mitsuo Iwadate,Hideaki Umeyama,Kun-Yi Hsin,Hiroaki Kitano,Kazuki Yamamoto,Nobuyoshi Sugaya,Koya Kato,Tatsuya Okuno,George Chikenji,Masahiro Mochizuki,Nobuaki Yasuo,Ryunosuke Yoshino,Keisuke Yanagisawa,Tomohiro Ban,Reiji Teramoto,Chandrasekaran Ramakrishnan,A. Mary Thangakani,D. Velmurugan,Philip Prathipati,Junichi Ito,Yuko Tsuchiya,Kenji Mizuguchi,Teruki Honma,Takatsugu Hirokawa,Yutaka Akiyama,Masakazu Sekijima","Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target",,"Scientific Reports",,"Vol. 5","No. 17209",,2015,Nov.
"Keisuke Yanagisawa,Shunta Komine,Masahito Ohue,Takashi Ishida,Yutaka Akiyama","Fast pre-filtering for virtual screening based on compound fragmentation","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"鈴木翔吾,大上雅史,秋山泰","活性値情報のグループ化とランク学習による活性化合物予測","第18回情報論的学習理論ワークショップ (IBIS2015)",,,,,,2015,Nov.
"柳澤 渓甫,小峰 駿汰,大上 雅史,石田 貴士,秋山 泰","Fast pre-filtering for virtual screening based on ligand decomposition","第21回創剤フォーラム若手研究会",,,,,,2015,Nov.
"鈴木翔吾,大上雅史,秋山泰","活性値情報のグループ化を用いたランク学習による化合物スクリーニング","第21回創剤フォーラム若手研究会",,,,,,2015,Nov.
"伴 兼弘,大上 雅史,秋山 泰","Multiple Grids Arrangement for Improving Conformational Search of Protein-Ligand Docking and Its Application to Inverse Docking Problem","第21回創剤フォーラム若手研究会",,,,,,2015,Nov.
"大上雅史,松崎由理,石田貴士,秋山泰","タンパク質間相互作用予測システムMEGADOCKによるEGFRパスウェイ解析","第21回創剤フォーラム若手研究会",,,,,,2015,Nov.
"Masahito Ohue,Takehiro Shimoda,Shuji Suzuki,Takashi Ishida,Yutaka Akiyama","A comparative study of GPU and MIC accelerations in fast Fourier transform-based protein-protein docking","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"Tomohiro Ban,Masahito Ohue,Yutaka Akiyama","Improving protein-ligand docking and inverse docking prediction by deepening conformation search on multiple grids","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"年本広太,尾瀬淳,池田和史,前田和哉,石田貴士,秋山泰,杉山 雄一","機械学習を用いた薬物トランスポーター基質のin silico予測","第21回創剤フォーラム若手研究会",,,,,,2015,Nov.
"秋山 泰","次世代シークエンサデータ解析のための情報処理システムの開発","HPCI戦略プログラム分野１成果報告会",,,,,,2015,Oct.
"Uchikoga, Nobuyuki,Masahito Ohue,Yuri Matsuzaki,Yutaka Akiyama","Post-docking analysis by physicochemical properties of protein-protein interactions generated from rigid-body docking processes","29th Annual Symposium of the Protein-Society","PROTEIN SCIENCE","WILEY-BLACKWELL","Vol. 24",,"pp. 253-253",2015,Oct.
"Tomohiro Ban,Masahito Ohue,Yutaka Akiyama","Multiple Grids Arrangement for Ligand Docking and Its Application to Inverse Docking Problem","IIBMP2015",,,,,,2015,Oct.
"Keisuke Yanagisawa,Shunta Komine,Masahito Ohue,Takashi Ishida,Yutaka Akiyama","Fast pre-filtering for virtual screening based on compound decomposition","IIBMP2015",,,,,,2015,Oct.
"大上雅史,内古閑伸之,松崎由理,秋山泰","アミノ酸プロファイルによるタンパク質ペプチド複合体のポストドッキング解析","第53回日本生物物理学会年会",,,,,,2015,Sept.
"内古閑伸之,松崎由理,大上雅史,秋山泰","剛体アンサンブルドッキングによって得られた候補構造群における相互作用残基ペアの特徴の解析","第53回日本生物物理学会年会",,,,,,2015,Sept.
"Keisuke Yanagisawa,Takashi Ishida,Yutaka Akiyama","Drug Clearance Pathway Prediction Based on Semi-supervised Learning",,"IPSJ Transactions on Bioinformatics",,"Vol. 8",,"pp. 21-27",2015,Aug.
"秋山泰","バイオインフォマティクス入門",,,"慶應義塾大学出版会",,,,2015,Aug.
"年本広太,尾瀬淳,池田和史,前田和哉,石田貴士,秋山泰,杉山雄一","機械学習を用いた薬物トランスポーター基質のin silico予測","第10回トランスポーター研究会年会","トランスポーター研究会年会抄録集",,"Vol. 10",,"pp. 78",2015,June
"和久井直樹,大上雅史,千葉峻太朗,石田貴士,岩?博史,秋山泰","既知の活性／非活性化合物のドッキング解析によるバーチャルスクリーニングに適したタンパク質立体構造モデルの選択","情報処理学会 第42回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","  2015-BIO-42","  60","  1-4",2015,June
"鈴木翔吾,柳澤渓甫,大上雅史,石田貴士,秋山泰","SVMとDeep Learningに基づくヒトc-Yesキナーゼ阻害化合物の予測","情報処理学会 第42回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","  2015-BIO-42","  36","  1-7",2015,June
"大上雅史,内古閑伸之,松崎由理,秋山泰","タンパク質間相互作用残基の物理化学的性質による単純化プロファイルを用いたポストドッキング解析","第15回日本蛋白質科学会年会",,,,,,2015,June
"Yutaka Akiyama,Takashi Ishida","iNTRODB and its Applicationin anti-Trypanosome Drug Discovery","ISNTD d3 2015",,,,,,2015,May
"Suzuki S,Kakuta M,Ishida T,Akiyama Y.","Faster sequence homology searches by clustering subsequences",,"Bioinformatics",,"  31","  8","  1183-90",2015,Apr.
"相澤 洋輔,石田貴士,秋山泰","ディープラーニングを利用したタンパク質天然変性領域予測",,"研究報告バイオ情報学（BIO）","一般社団法人情報処理学会","Vol. 2015","No. 13","pp. 1-6",2015,Mar.
"Shuji Suzuki,Masanori Kakuta,Takashi Ishida,Yutaka Akiyama","GHOSTZ-GPU: Fast Protein Sequence Homology Search on GPUs","GPU Technology Conference 2015 (GTC2015)",,,,"No. P5273",,2015,Mar.
"小幡 康文,石田貴士,秋山泰","タンパク質ドッキングと配列情報特徴解析の融合によるタンパク質間相互作用予測の高精度化",,"研究報告バイオ情報学（BIO）","一般社団法人情報処理学会","Vol. 2015","No. 14","pp. 1-6",2015,Mar.
"Nobuyuki Uchikoga,Yuri Matsuzaki,Masahito Ohue,Takatsugu Hirokawa,Yutaka Akiyama","Analysis of amino acid properties in interaction surfaces of decoys generated by re-docking","Biophysical Society 59th Annual Meeting",,,,,,2015,Feb.
"Yuri Matsuzaki,Nobuyuki Uchikoga,Masahito Ohue,Yutaka Akiyama","Prediction of human-virus protein-protein interactions by exhaustive rigid docking.","Biophysical Society 59th Annual Meeting",,,,,,2015,Feb.
"Takehiro Shimoda,Shuji Suzuki,Masahito Ohue,Takashi Ishida,Yutaka Akiyama.","Protein-Protein Docking on Hardware Accelerators : Comparison of GPU and MIC Architectures","The Thirteenth Asia-Pacific Bioinformatics Conference (APBC2015)","BMC Systems Biology","BioMed Central","Vol. 9","No. Suppl 1",,2015,Jan.
"Masahito Ohue,Takehiro Shimoda,Shuji suzuki,Yuri Matsuzaki,Takashi Ishida,Yutaka Akiyama","MEGADOCK 4.0: an ultra?high-performance protein-protein docking software for heterogeneous supercomputers","APBC 2015: The Thirteenth Asia Pacific Bioinformatics Conference",,,,,,2015,Jan.
"Kakuta, M.,Suzuki, S.,Ishida, T.,Akiyama, Y.","GHOST-MP: A Massively Parallel Biological Sequence Similarity Search for Metagenomics using OpenMP and MPI","Annual Meeting on Advanced Computing System and Infrastructure (ACSI) 2015",,,,,,2015,Jan.
"杉原舜,石田貴士,秋山泰","低分子化合物二次元構造比較システムの改良","情報処理学会 第42回バイオ情報学研究会","情報処理学会研究報告",,,,,2015,
"Zhang Chaojie,Koichi Shirahata,Shuji Suzuki,Yutaka Akiyama,Satoshi Matsuoka","Performance Analysis of MapReduce Implementations for High Performance Homology Search","HPCS2015",,,,,,2015,
"小峰駿汰,石田貴士,秋山泰","フラグメント伸長型タンパク質-化合物ドッキングのビームサーチによる高速化","情報処理学会 第42回バイオ情報学研究会","情報処理学会研究報告",,,,,2015,