"大上雅史","タンパク質構造予測法AlphaFold2の可能性","中分子創薬に関わる次世代産業研究会(IMD2) 第3回基礎講座",,,,,,2021,Dec.
"大上雅史","情報技術による低分子・中分子創薬SX","Tokyo Tech Research Festival（TTRF）2021",,,,,,2021,Nov.
"Kairi Furi,Masahito Ohue","Improvement of learning-to-rank for ligand-based virtual screening using gradient boosting technique with relevance refinement","第5回Tokyo Bioinformatics Meeting",,,,,,2021,Nov.
"Takatsugu Kosugi,Masahito Ohue","Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions","第5回Tokyo Bioinformatics Meeting",,,,,,2021,Nov.
"Shunya Sugita,Masahito Ohue","Drug-target affinity prediction using applicability domain of feature learning","第5回Tokyo Bioinformatics Meeting",,,,,,2021,Nov.
"杉田昌岳,杉山聡,藤江拓哉,吉川寧,柳澤渓甫,大上雅史,秋山泰","分子動力学シミュレーションに基づいた環状ペプチドの膜透過率の大規模予測","第58回日本生物物理学会年会",,,,,,2021,Nov.
"杉田昌岳,杉山聡,藤江拓哉,吉川寧,柳澤渓甫,大上雅史,秋山泰","分子動力学シミュレーションに基づいた環状ペプチドの膜透過率の大規模予測","第58回日本生物物理学会年会",,,,,,2021,Nov.
"大上雅史","情報学で挑むバイオ・創薬イノベーション","ヒューマンネットワーク高専(HNK) 月例会(2021年10月度)",,,,,,2021,Oct.
"杉田昌岳,杉山聡,藤江拓哉,吉川寧,柳澤渓甫,大上雅史,秋山泰","分子動力学シミュレーションに基づいた環状ペプチドの膜透過率の大規模予測","第43回溶液化学シンポジウム",,,,,,2021,Oct.
"Kazuki Takabatake,Kazuki Izawa,Motohiro Akikawa,Keisuke Yanagisawa,Masahito Ohue,Yutaka Akiyama","Improved Homology Search for Metagenomic Analysis by Two-Step Seed Search with Reduced Amino Acid Alphabets","The 10th International Conference on Bioinformatics and Biomedical Science (ICBBS2021)",,"IEEE",,,,2021,Oct.
"Sugita M,Sugiyama S,Takuya Fujie,Yoshikawa Y,Yanagisawa K,Ohue M,Akiyama Y.","Large-scale membrane permeability prediction of cyclic peptides crossing a lipid bilayer based on enhanced sampling molecular dynamics simulations","CBI学会2021年大会",,,,,,2021,Oct.
"Takatsugu Kosugi,Masahito Ohue","Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions",,"International Journal of Molecular Sciences","MDPI","Volume 22","Issue 20",,2021,Oct.
"大上雅史","TSUBAME 3.0 による Cresset Flare FEP 計算の展開","CBI学会2021年大会",,,,,,2021,Oct.
"Takatsugu Kosugi,Masahito Ohue","Quantitative estimate of protein-protein interaction targeting drug-likeness","2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","In Proceedings of The 18th IEEE International Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2021)","IEEE",,,"pp. 1-8",2021,Oct.
"大上雅史","計算によるタンパク質間相互作用予測と複合体構造予測","MED BINDS 長浜バイオ大学におけるBINDSユニット連携講習会 創薬のためのタンパク質構造インフォマティクス２",,,,,,2021,Sept.
"大上雅史","AlphaFold2の登場とオープンサイエンス","第10回生命医薬情報学連合大会（IIBMP2021）",,,,,,2021,Sept.
"Shunya Sugita,Masahito Ohue","Drug-target affinity prediction using applicability domain of feature learning","第10回生命医薬情報学連合大会（IIBMP2021）",,,,,,2021,Sept.
"Kairi Furi,Masahito Ohue","Improvement of learning-to-rank for ligand-based virtual screening using gradient boosting technique with relevance refinement","第10回生命医薬情報学連合大会（IIBMP2021）",,,,,,2021,Sept.
"Takatsugu Kosugi,Masahito Ohue","Development of a Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions","第10回生命医薬情報学連合大会（IIBMP2021）",,,,,,2021,Sept.
"Shunya Sugita,Masahito Ohue","Drug-target affinity prediction using applicability domain based on data density","18th IEEE International Conference on Computational Intelligence in Bioinformatics and Computational Biology(IEEE CIBCB2021)","In Proceedings of The 18th IEEE International Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2021)","IEEE",,,,2021,Sept.
"津嶋佑旗,柳澤渓甫,大上雅史,秋山泰.","タンパク質表面との結合親和性を考慮した長距離フラグメントリンキング手法の開発","第67回BIO研究発表会","研究報告バイオ情報学（BIO）","情報処理学会","  2021-BIO-67","  1","Page 1-8",2021,Sept.
"Takabatake K,Izawa K,Akikawa M,Yanagisawa K,Ohue M,Akiyama Y.","Improved large-scale homology search by two-step seed search using multiple reduced amino acid alphabets",,"Genes",,"  12","  9","  1455",2021,Sept.
"Masahito Ohue","Re-ranking of computational protein?peptide docking solutions with amino acid profiles of rigid-body docking results","The 21st International Conference on Bioinformatics & Computational Biology (BIOCOMP'20)","Advances in Computer Vision and Computational Biology","Springer",,,,2021,Aug.
"Isawa Kazuya,Yanagisawa Keisuke,Ohue Masahito,Akiyama Yutaka","Antisense oligonucleotide activity analysis based on opening and binding energies to targets","Proceedings of The 27th International Conference on Parallel & Distributed Processing Techniques and Applications (PDPTA’21)","Advances in Parallel & Distributed Processing and Applications",,,,,2021,July
"Sugita M,Sugiyama S,Takuya Fujie,Yoshikawa Y,Yanagisawa K,Ohue M,Akiyama Y.","Large-scale membrane permeability prediction of cyclic peptides crossing a lipid bilayer based on enhanced sampling molecular dynamics simulations",,"Journal of Chemical Information and Modeling",,"  61","  7","  3681-3695",2021,July
"Masahito Ohue,Hiroki Watanabe,Yutaka Akiyama","MEGADOCK-Web-Mito: human mitochondrial protein-protein interaction prediction database","27th International Conference on Parallel & Distributed Processing (PDPTA’21)","Advances in Parallel & Distributed Processing, and Applications(Accepted)","Springer",,,,2021,July
"Masahito Ohue,Yutaka Akiyama","MEGADOCK-GUI: a GUI-based complete cross-docking tool for exploring protein-protein interactions","27th International Conference on Parallel & Distributed Processing (PDPTA’21)","Advances in Parallel & Distributed Processing, and Applications(Accepted)","Springer",,,,2021,July
"Masahito Ohue,Kento Aoyama,Yutaka Akiyama","High-performance cloud computing for exhaustive protein-protein docking","The 26th International Conference on Parallel & Distributed Processing (PDPTA’20)","Advances in Parallel & Distributed Processing, and Applications","Springer",,,"pp. 737-746",2021,July
"Izawa K,Okamoto-Shibayama K,Kita D,Tomita S,Saito A,Ishida T,Ohue M,Akiyama Y,Ishihara K.","Taxonomic and gene category analyses of subgingival plaques from a group of Japanese individuals with and without periodontitis",,"International Journal of Molecular Sciences","International Journal of Molecular Sciences","Volume 22","Issue 10","  5298",2021,May
"大上雅史","Oxford Journals-JSBi Prize受賞報告",,"日本バイオインフォマティクス学会ニュースレター","特定非営利活動法人日本ハ?イオインフォマティクス学会",,"  39","  12-13",2021,Mar.
"大上雅史","学振申請書の書き方とコツ DC/PD獲得を目指す若者へ 改訂第２版",,"学振申請書の書き方とコツ 改訂第２版","講談社",,,,2021,Mar.
"杉田駿也,大上雅史","適用領域を考慮した薬剤標的親和性予測","情報処理学会第83回全国大会",,,,,,2021,Mar.
"大上雅史,古井海里","GBDTによる化合物の血液胎盤関門透過性予測",,"情報処理学会研究報告",,"Vol. 2021-BIO-65","No. 8","pp. 1-3",2021,Mar.
"井澤和也,柳澤渓甫,大上雅史,秋山泰","標的配列との結合・開放エネルギー推定に基づくアンチセンス核酸の阻害活性モデルの研究",,"情報処理学会研究報告",,"Vol. 2021-BIO-65","No. 7","pp. 1-7",2021,Mar.
"生化学若い研究者の会,大上雅史","核酸の生化学（第8章）",,"これだけ!生化学 第２版","秀和システム",,,,2021,Feb.