"Masahito Ohue,Yusuke Matsuzaki,Yuri Matsuzaki,Yutaka Akiyama","Improvement of all-to-all protein-protein interaction prediction system MEGADOCK","The 20th International Conference on Genome Informatics Workshop(GIW2009)","The 20th International Conference on Genome Informatics Workshop Poster Proceedings",,,,"  P033",2009,Dec.
"Yuri Matsuzaki,Yusuke Matsuzaki,Toshiyuki Sato,Yutaka Akiyama","In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis",,"Journal of Bioinformatics and Computational Biology",,"Vol. 7","No. 6","  991-1012",2009,Dec.
"Masahito Ohue,Yusuke Matsuzaki,Yuri Matsuzaki,Yutaka Akiyama","Improvement of all-to-all protein-protein interaction prediction system MEGADOCK","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P10-101",2009,Nov.
"Yusuke Matsuzaki,Yuri Matsuzaki,Masakazu Sekijima,Yutaka Akiyama","Protein structure sampling based on molecular dynamics and improvement of docking prediction","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P10-99",2009,Nov.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","A computational screening system of protein-protein interactions using tertiary structure data: an application to signaling pathway analysis.","BIOINFO 2009 CBI-KSBSB Joint Conference","Proc. BIOINFO 2009 CBI-KSBSB Joint Conference",,,,"  P11-114",2009,Nov.
"Takeshi Sakurada,Moriyoshi Koizumi,Sachio Nohara,Chihiro Okada,Yuri Matsuzaki,Masaru Tomita","E-Cell IDE: an integrated modelling and simulation environment for systems-biology","The 10th International Conference on Systems Biology (ICSB 2009)",,,,,,2009,Sept.
"松崎裕介,松崎由理,関嶋政和,秋山泰","分子動力学法に基づくタンパク質構造サンプリングとドッキング予測の改良","情報処理学会 第18回バイオ情報学研究会","情報処理学会研究報告","情報処理学会","Vol. 2009-BIO-18,","No. 1","pp. 1-6",2009,Sept.
"大上雅史,松崎裕介,松崎由理,秋山泰","網羅的タンパク質間相互作用予測システムにおける判別精度の改良","情報処理学会 第18回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","Vol. 2009-BIO-18","No. 3","pp. 1-8",2009,Sept.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis","The 10th International Conference on Systems Biology (ICSB 2009)",,,,,,2009,Sept.
"Yuri Matsuzaki,Yusuke Matsuzaki,Masahito Ohue,Toshiyuki Sato,Yutaka Akiyama","A computational screening system of protein-protein interactions using tertiary structure data: with application to pathway analysis","Joint Computational Science Workshop 2009",,,,,,2009,July
"大上雅史,松崎裕介,松崎由理,佐藤智之,秋山泰","物理化学的相互作用の導入による網羅的タンパク質間相互作用予測システムの高精度化","情報処理学会 第17回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","  2009-BIO-17","  11","  1-8",2009,May
"松崎 由理,松崎 裕介,大上雅史,佐藤 智之,秋山 泰","ドッキング後処理によるPPI検出システムの応用と評価?EGFRシグナル伝達系への適用にむけて","第8回データ解析融合ワークショップ（公開ワークショップ）",,,,,,2009,Mar.
"松崎由理","形状相補性に基づくall-to-allドッキングによる網羅的なタンパク質間相互作用予測","平成20年度 第6回IPABオープンセミナー  
第6回IPABオープンセミナー「タンパク質構造解析の新潮流」",,,,,,2009,Mar.
"櫻田剛史,小泉守義,野原祥夫,岡田千尋,松崎由理,冨田勝","E-Cell IDE: システムバイオロジーのためのモデリング・シミュレーション統合環境",,"情報処理学会 研究報告",,"Vol. 2009","No. 25","pp. 25-28",2009,Feb.