"秋山 泰,松崎 由理,内古閑 伸之,石田 貴士,大上 雅史","網羅的タンパク質ドッキング解析プログラムMEGADOCKの開発と応用","次世代生命体統合シミュレーションソフトウェアの研究開発成果報告会 ISLiM成果報告会2011",,,,,,2011,Dec.
"Masahito Ohue,Yuri Matsuzaki,Nobuyuki Uchikoga,Takashi Ishida,Yutaka Akiyama","Binding Conformation Prediction of a Protein Complex Using Physical Docking","GCOE Compview Final Symposium (Preliminary event of ISAAC 2011)",,,,,,2011,Dec.
"Sarel J. Fleishman,Timothy A. Whitehead,Eva-Maria Strauch,Jacob E. Corn,Sanbo Qin,Huan-Xiang Zhou,Julie C. Mitchell,Omar N. A. Demerdash,Mayuko Takeda-Shitaka,Genki Terashi,Iain H. Moal,Xiaofan Li,Paul A. Bates,Martin Zacharias,Hahnbeom Park,Jun-su Ko,Hasup Lee,Chaok Seok,Thomas Bourquard,Julie Bernauer,Anne Poupon,Jerome Aze,Seren Soner,Sefik Kerem Oval.,Pemra Ozbek,Nir Ben Tal,Turkan Haliloglu,Howook Hwang,Thom Vreven,Brian G. Pierce,Zhiping Weng,Laura Perez-Cano,Carles Pons,Juan Fernandez-Recio,Fan Jiang,Feng Yang,Xinqi Gong,Libin Cao,Xianjin Xu,Bin Liu,Panwen Wang,Chunhua Li,Cunxin Wang,Charles H. Robert,Mainak Guharoy,Shiyong Liu,Yangyu Huang,Lin Li,Dachuan Guo,Ying Chen,Yi Xiao,Nir London,Zohar Itzhaki,Ora Schueler-Furman,Yuval Inbar,Vladimir Patapov,Mati Cohen,Gideon Schreiber,Yuko Tsuchiya,Eiji Kanamori,Daron M. Standley,Haruki Nakamura,Kengo Kinoshita,Camden M. Driggers,Robert G. Hall,Jessica L. Morgan,Victor L. Hsu,Jian Zhan,Yuedong Yang,Yaoqi Zhou,Panagiotis L. Kastritis,Alexandre M. J. J. Bonvin,Weiyi Zhang,Carlos J. Camacho,Krishna P. Kilambi,Aroop Sircar,Jeffrey J. Gray,Masahito Ohue,Nobuyuki Uchikoga,Yuri Matsuzaki,Takashi Ishida,Yutaka Akiyama,Raed Khashan,Stephen Bush,Denis Fouches,Alexander Tropsha,Juan Esquivel-Rodriguez,Daisuke Kihara,P. Benjamin Stranges,Ron Jacak,Brian Kuhlman,Sheng-You Huang,Xiaoqin Zou,Shoshana J. Wodak,Joel Janin,David Baker","Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology",,"Journal of Molecular Biology","ScienceDirect","Volume 414","Issue 2","pp. 289-302",2011,Nov.
"松崎由理,内古閑伸之,大上雅史,石田貴士,秋山泰","MEGADOCK: 網羅的な立体構造のドッキングによるタンパク質間相互作用予測アプリケーション","バイオスーパーコンピューティング サマースクール2011バイオスーパーコンピューティング",,,,,,2011,Sept.
"内古閑 伸之,松崎 由理,大上 雅史,広川 貴次,秋山 泰","相互作用プロファイルを用いたタンパク質間ドッキングの代表相互作用の探索","第49回日本生物物理学会年会",,,,,,2011,Sept.
"Yuri Matsuzaki,Masahito Ohue,Nobuyuki Uchikoga,Takashi Ishida,Yutaka Akiyama","MEGADOCK: a Fast Protein-protein Interaction Prediction System by Exhaustive Docking","12th International Conference on Systems Biology (ICSB 2011)",,,,,,2011,Sept.
"Masahito Ohue,Yuri Matsuzaki,Yutaka Akiyama","Docking-calculation-based Method for Predicting Protein-RNA Interactions",,"Genome Informatics",,"Volume 25","Issue 1","pp. 25-39",2011,Aug.
"Yuri Matsuzaki,Masahito Ohue,Nobuyuki Uchikoga,Takashi Ishida,Yutaka Akiyama","MEGADOCK: A fast protein-protein interaction prediction system by exhaustive docking","The 9th International Workshop on Advanced Genomics",,,,,,2011,July
"山本航平,大上雅史,内古閑伸之,松崎由理,石田貴士,秋山 泰","タンパク質間相互作用予測における可視化手法の開発および予測精度の改善","情報処理学会 第25回バイオ情報学研究会","研究報告 バイオ情報学（BIO）","情報処理学会","vol. 2011-BIO-25","  31","pp. 1-7",2011,June
"大上雅史,松崎由理,内古閑伸之,石田貴士,秋山 泰","ドッキング計算に基づく網羅的タンパク質-RNA間相互作用予測","情報処理学会 第25回バイオ情報学研究会","研究報告 バイオ情報学（BIO）","情報処理学会","vol. 2011-BIO-25","  30","pp. 1-8",2011,June
"大上雅史,松崎由理,秋山 泰","立体構造情報を用いたドッキング計算による大規模タンパク質-RNA間相互作用予測手法","情報処理学会 第73回全国大会",,,,,,2011,Mar.
"山本航平,大上雅史,松崎由理,石田貴士,秋山 泰","タンパク質ドッキング計算結果の可視化とその解析","情報処理学会 第73回全国大会",,,,,,2011,Mar.
"松崎由理,内古閑伸之,大上雅史,石田貴士,秋山泰","MEGADOCKを用いたタンパク質間相互作用予測のシグナル伝達系への応用","第3回 バイオスーパーコンピューティングシンポジウム",,,,,,2011,Feb.