"Masahito Ohue,Yuri Matsuzaki,Takehiro Shimoda,Takashi Ishida,Yutaka Akiyama","Highly Precise Protein-Protein Interaction Prediction Based on Consensus Between Template-Based and de Novo Docking Methods",,"BMC Proceedings","BioMed Central","Volume 7","  Supplement 7","  S6",2013,Dec.
"Masahito Ohue,Yuri Matsuzaki,Takehiro Shimoda,Takashi Ishida,Yutaka Akiyama","Highly precise protein-protein interaction prediction by integrating template-based and template-free protein docking","The 2013 Annual Conference of the Japanese Society for Bioinformatics (JSBi2013)",,,,,"  P077",2013,Nov.
"Yuri Matsuzaki,Masahito Ohue,Nobuyuki Uchikoga,Takashi Ishida,Yutaka Akiyama","Structure based protein-protein interaction network prediction of EGFR signaling related proteins using MEGADOCK","2nd IIT Madras ? Tokyo Tech Joint Symposium on Techniques and Applications of Bioinformatics",,,,,,2013,Sept.
"Yuri Matsuzaki,Nobuyuki Uchikoga,Masahito Ohue,Takehiro Shimoda,Toshiyuki Sato,Takashi Ishida,Yutaka Akiyama","MEGADOCK 3.0: A high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments",,"Source Code for Biology and Medicine","BioMed Central","Vol. 8","No. 1",,2013,Sept.
"Takehiro Shimoda,Masahito Ohue,Yuri Matsuzaki,Takayuki Fujiwara,Nobuyuki Uchikoga,Takashi Ishida,Yutaka Akiyama","The MEGADOCK project: Ultra-high-performance protein-protein interaction prediction tools on supercomputing environments","ACM Conference on Bioinformatics, Computatioal Biology and Biomedical Informatics (ACM-BCB2013)",,,,,"p. 668",2013,Sept.
"Masahito Ohue,Yuri Matsuzaki,Takehiro Shimoda,Takashi Ishida,Yutaka Akiyama","Improvement of protein-protein interaction prediction by integrating template-based and template-free protein docking","ACM Conference on Bioinformatics, Computatioal Biology and Biomedical Informatics (ACM-BCB2013)",,,,,"p. 667",2013,Sept.
"Masahito Ohue,Yuri Matsuzaki,Takehiro Shimoda,Takashi Ishida,Yutaka Akiyama","Highly precise protein-protein interaction prediction by integrating template-based and template-free protein docking","2nd IIT Madras ? Tokyo Tech Joint Symposium on Techniques and Applications of Bioinformatics",,,,,"  P08",2013,Sept.
"Nobuyuki Uchikoga,Yuri Matsuzaki,Masahito Ohue,Takatsugu Hirokawa,Yutaka Akiyama","Re-docking scheme of protein-protein interactions for generating near-native interaction patterns in difficult docking cases","2nd IIT Madras ? Tokyo Tech Joint Symposium on Techniques and Applications of Bioinformatics",,,,,,2013,Sept.
"Nobuyuki Uchikoga,Yuri Matsuzaki,Masahito Ohue,Takatsugu Hirokawa,Yutaka Akiyama","Re-docking scheme for generating near-native protein complexes by assembling residue interaction fingerprints",,"PLOS ONE",,"Vol. 8","No. 7","  e69365",2013,July
"Yuri Matsuzaki,Masahito Ohue,Nobuyuki Uchikoga,Yutaka Akiyama","Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis",,"Protein and Peptide Letters","Bentham Science","Volume 21","Issue 8","pp. 790-798",2013,July
"大上雅史,松崎由理,内古閑伸之,石田貴士,秋山泰","MEGADOCK：構造ドッキング計算を用いたタンパク質間相互作用の大規模予測",,"第13回日本蛋白質科学会年会",,,,"  1P-059",2013,June
"Masahito Ohue,Yuri Matsuzaki,Takehiro Shimoda,Takashi Ishida,Yutaka Akiyama","Highly Precise Protein-Protein Interaction Prediction Based on Consensus Between Template-Based and de Novo Docking Methods","Great Lakes Bioinformatics Conference 2013","Proceedings of Great Lakes Bioinformatics Conference 2013",,,,"pp. 100-109",2013,May
"Masahito Ohue,Yuri Matsuzaki,Nobuyuki Uchikoga,Kohei Yamamoto,Takayuki Fujiwara,Takehiro Shimoda,Toshiyuki Sato,Takashi Ishida,Yutaka Akiyama","Protein-protein interaction prediction based on rigid-body docking with ultra-high-performance computing technique: applications to affinity prediction on CAPRI round 21 and interactome analyses",,"CAPRI 2013 5th Evaluation Meeting",,,,,2013,Apr.
"秋山泰,松崎由理,石田貴士,大上雅史,内古閑 伸之","網羅的タンパク質ドッキング予測プログラムMEGADOCKの開発と応用","文部科学省「革新的ハイパフォーマンス・コンピューティング・インフラ （HPCI） の構築」HPCI戦略プログラム「グランドチャレンジ・アプリケーションの研究開発」公開シンポジウム",,,,,,2013,Mar.
"大上雅史,松崎由理,内古閑伸之,山本航平,下田雄大,藤原隆之,石田貴士,秋山泰","MEGADOCK 3.0：超並列タンパク質間相互作用予測システム",,"生命情報科学若手の会 第4回研究会",,,,,2013,Mar.
"松崎由理,大上雅史,石田貴士,内古閑伸之,秋山泰","大規模タンパク質間ネットワーク推定に関する研究","平成24年度「京」を中核とするHPCIシステム利用研究課題中間報告会",,,,,,2013,Mar.
"Yuri Matsuzaki,Nobuyuki Uchikoga,Masahito Ohue,Takashi Ishida,Yutaka Akiyama","Protein-protein interaction network prediction by using rigid-body docking tool MEGADOCK","Biophysical Society 57th Annual Meeting",,,,,,2013,Feb.
"大上雅史,松崎由理,石田貴士,秋山泰","MEGADOCK: 大規模タンパク質間相互作用予測システムとその応用","HPCS2013 ハイパフォーマンスコンピューティングと計算科学シンポジウム",,,,,,2013,Jan.
"秋山泰,松崎由理,大上雅史,石田貴士,内古閑伸之","網羅的タンパク質ドッキング解析プログラムMEGADOCKの開発と応用","ISLiMソフトウェア研究開発報告会",,,,,,2013,Jan.