"柳澤 渓甫,小峰 駿汰,大上 雅史,石田 貴士,秋山 泰","Fast pre-filtering for virtual screening based on ligand decomposition","第21回創剤フォーラム若手研究会",,,,,,2015,Nov.
"Shuntaro Chiba,Kazuyoshi Ikeda,Takashi Ishida,M. Michael Gromiha,Y-h. Taguchi,Mitsuo Iwadate,Hideaki Umeyama,Kun-Yi Hsin,Hiroaki Kitano,Kazuki Yamamoto,Nobuyoshi Sugaya,Koya Kato,Tatsuya Okuno,George Chikenji,Masahiro Mochizuki,Nobuaki Yasuo,Ryunosuke Yoshino,Keisuke Yanagisawa,Tomohiro Ban,Reiji Teramoto,Chandrasekaran Ramakrishnan,A. Mary Thangakani,D. Velmurugan,Philip Prathipati,Junichi Ito,Yuko Tsuchiya,Kenji Mizuguchi,Teruki Honma,Takatsugu Hirokawa,Yutaka Akiyama,Masakazu Sekijima","Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target",,"Scientific Reports",,"Vol. 5","No. 17209",,2015,Nov.
"Masahito Ohue,Takehiro Shimoda,Shuji Suzuki,Takashi Ishida,Yutaka Akiyama","A comparative study of GPU and MIC accelerations in fast Fourier transform-based protein-protein docking","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"Keisuke Yanagisawa,Shunta Komine,Masahito Ohue,Takashi Ishida,Yutaka Akiyama","Fast pre-filtering for virtual screening based on compound fragmentation","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"年本広太,尾瀬淳,池田和史,前田和哉,石田貴士,秋山泰,杉山 雄一","機械学習を用いた薬物トランスポーター基質のin silico予測","第21回創剤フォーラム若手研究会",,,,,,2015,Nov.
"Takashi Ishida","Protein structure prediction based on machine learning","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"Yuri Matsuzaki,Masahito Ohue,Nobuyuki Uchikoga,Takashi Ishida,Yutaka Akiyama","MEGADOCK: A high-performance protein-protein interaction prediction software for petascale supercomputing environments","3nd IIT Madras ? Tokyo Tech Joint Symposium on Algorithms and Applications of Bioinformatics",,,,,,2015,Nov.
"Keisuke Yanagisawa,Shunta Komine,Masahito Ohue,Takashi Ishida,Yutaka Akiyama","Fast pre-filtering for virtual screening based on compound decomposition","IIBMP2015",,,,,,2015,Oct.
"Keisuke Yanagisawa,Takashi Ishida,Yutaka Akiyama","Drug Clearance Pathway Prediction Based on Semi-supervised Learning",,"IPSJ Transactions on Bioinformatics",,"Vol. 8",,"pp. 21-27",2015,Aug.
"年本広太,尾瀬淳,池田和史,前田和哉,石田貴士,秋山泰,杉山雄一","機械学習を用いた薬物トランスポーター基質のin silico予測","第10回トランスポーター研究会年会","トランスポーター研究会年会抄録集",,"Vol. 10",,"pp. 78",2015,June
"鈴木翔吾,柳澤渓甫,大上雅史,石田貴士,秋山泰","SVMとDeep Learningに基づくヒトc-Yesキナーゼ阻害化合物の予測","情報処理学会 第42回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","  2015-BIO-42","  36","  1-7",2015,June
"和久井直樹,大上雅史,千葉峻太朗,石田貴士,岩?博史,秋山泰","既知の活性／非活性化合物のドッキング解析によるバーチャルスクリーニングに適したタンパク質立体構造モデルの選択","情報処理学会 第42回バイオ情報学研究会","研究報告バイオ情報学（BIO）","情報処理学会","  2015-BIO-42","  60","  1-4",2015,June
"Yutaka Akiyama,Takashi Ishida","iNTRODB and its Applicationin anti-Trypanosome Drug Discovery","ISNTD d3 2015",,,,,,2015,May
"Suzuki S,Kakuta M,Ishida T,Akiyama Y.","Faster sequence homology searches by clustering subsequences",,"Bioinformatics",,"  31","  8","  1183-90",2015,Apr.
"小幡 康文,石田貴士,秋山泰","タンパク質ドッキングと配列情報特徴解析の融合によるタンパク質間相互作用予測の高精度化",,"研究報告バイオ情報学（BIO）","一般社団法人情報処理学会","Vol. 2015","No. 14","pp. 1-6",2015,Mar.
"相澤 洋輔,石田貴士,秋山泰","ディープラーニングを利用したタンパク質天然変性領域予測",,"研究報告バイオ情報学（BIO）","一般社団法人情報処理学会","Vol. 2015","No. 13","pp. 1-6",2015,Mar.
"Shuji Suzuki,Masanori Kakuta,Takashi Ishida,Yutaka Akiyama","GHOSTZ-GPU: Fast Protein Sequence Homology Search on GPUs","GPU Technology Conference 2015 (GTC2015)",,,,"No. P5273",,2015,Mar.
"Kakuta, M.,Suzuki, S.,Ishida, T.,Akiyama, Y.","GHOST-MP: A Massively Parallel Biological Sequence Similarity Search for Metagenomics using OpenMP and MPI","Annual Meeting on Advanced Computing System and Infrastructure (ACSI) 2015",,,,,,2015,Jan.
"Masahito Ohue,Takehiro Shimoda,Shuji suzuki,Yuri Matsuzaki,Takashi Ishida,Yutaka Akiyama","MEGADOCK 4.0: an ultra?high-performance protein-protein docking software for heterogeneous supercomputers","APBC 2015: The Thirteenth Asia Pacific Bioinformatics Conference",,,,,,2015,Jan.
"Takehiro Shimoda,Shuji Suzuki,Masahito Ohue,Takashi Ishida,Yutaka Akiyama.","Protein-Protein Docking on Hardware Accelerators : Comparison of GPU and MIC Architectures","The Thirteenth Asia-Pacific Bioinformatics Conference (APBC2015)","BMC Systems Biology","BioMed Central","Vol. 9","No. Suppl 1",,2015,Jan.
"小峰駿汰,石田貴士,秋山泰","フラグメント伸長型タンパク質-化合物ドッキングのビームサーチによる高速化","情報処理学会 第42回バイオ情報学研究会","情報処理学会研究報告",,,,,2015,
"杉原舜,石田貴士,秋山泰","低分子化合物二次元構造比較システムの改良","情報処理学会 第42回バイオ情報学研究会","情報処理学会研究報告",,,,,2015,