"Ai Shinobu,Kazuhiro Takemura,Nobuyuki Matubayasi,Akio Kitao","Refining evERdock: Improved selection of good protein-protein complex models achieved by MD optimization and use of multiple conformations",,"The Journal of Chemical Physics",," 149"," 19"," 195101",2018,Nov. "Kazuhiro Takemura,Chika Sato,Akio Kitao","ColDock: Concentrated Ligand Docking with All-Atom Molecular Dynamics Simulation",,"The Journal of Physical Chemistry B",," 122"," 29"," 7191-7200",2018,July "Kazuhiro Takemura,Nobuyuki Matubayasi,Akio Kitao","Binding free energy analysis of protein-protein docking model structures by evERdock",,"The Journal of Chemical Physics",," 148"," 10"," 105101",2018,Mar.