"Kohei Nagao,Yoshiki Tanaka,Rei Kajitani,Atsushi Toyoda,Takehiko Itoh,Souichirou Kubota,Yuji Goto","Bioinformatic and fine-scale chromosomal mapping reveal the nature and evolution of eliminated chromosomes in the Japanese hagfish, Eptatretus burgeri, through analysis of repetitive DNA families",,"PLoS One",,,,,2023,Aug. "Takahiro Yamabe,Rei Kajitani,Atsushi Toyoda,Takehiko Itoh","Chromosomal-level genome assembly of the coffee bee hawk moth reveals the evolution of chromosomes and the molecular basis of distinct phenotypes",,"Genome Biology and Evolution",," evad141",,,2023,July "Shun Ouchi,Rei Kajitani,Takehiko Itoh","GreenHill: a de novo chromosome?level scaffolding and phasing tool using Hi?C",,"Genome Biology",," 24"," 162 (2023)",,2023,July "Shun Ouchi,Rei Kajitani,Takehiko Itoh","GreenHill: A De Novo Chromosome-Level Scaffolding and Phasing Tool Using Hi-C","Plant & Animal Genome Conference (PAG30)",,,,,,2023,Jan. "Takahiro Yamabe,Rei Kajitani,Atsushi Toyoda,Takehiko Itoh","Chromosome-Level De Novo Genome Assembly and Comparative Genome Analysis of the Coffee Bee Hawk Moth, Cephonodes Hylas","Plant & Animal Genome Conference (PAG30)",,,,,,2023,Jan. "畑島諒,豊田敦,梶谷嶺,伊藤武彦,二階堂雅人","免疫関連遺伝子の発現消失がもたらしたシクリッドの唇肥大化平行進化","日本進化学会第26回沼津大会",,,,,,2022,Aug. "畑島諒,待井長敏,豊田敦,梶谷嶺,長澤竜樹,伊藤武彦,二階堂雅人.","免疫システムがもたらしたシクリッドの唇肥大化平行進化","第2回日本遺伝学会春の分科会",,,,,,2022,Mar. "Mizuki Horoiwa,Takashi Nakamura,Hideaki Yuasa,Rei Kajitani,Yosuke Ameda,Tetsuro Sasaki,Hiroki Taninaka,Taisei Kikuchi,Takehisa Yamakita,Toyoda Atsushi,Takehiko Itoh,Nina Yasuda","Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions",,"Frontiers in Marine Science",,"Vol. 8",,,2022,Jan. "Maierdan Palihati,Hideo Tsubouchi,Bilge Argunhan,Rei Kajitani,Omirgul Bakenova,Yong?Woon Han,Yasuto Murayama,Takehiko Itoh,Hiroshi Iwasaki","Homology length dictates the requirement for Rad51 and Rad52 in gene targeting in the Basidiomycota yeast Naganishia liquefaciens",,"Current Genetics","Springer","Vol. 67","no. 6","pp. 919-936",2021,Dec. "Michiharu Nakano,Hideki Hirakawa,Eigo Fukai,Atsushi Toyoda,Rei Kajitani,Yohei Minakuchi,Takehiko Itoh,Yohei Higuchi,Toshiaki Kozuka,Hidemasa Bono,Kenta Shirasawa,Ippei Shiraiwa,Katsuhiko Sumitomo,Tamotsu Hisamatsu,Michio Shibata,Sachiko Isobe,Kenji Taniguchi,Makoto Kusaba","A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum",,"Communications Biology",," 4"," 1"," 1167",2021,Oct. "山部貴央,梶谷嶺,豊田敦,伊藤武彦","スズメガ科昆虫オオスカシバの新規ゲノムアセンブリと比較ゲノム解析","第92回日本動物学会オンライン米子大会",,,,,,2021,Sept. "服部拓海,梶谷嶺,伊藤武彦","Hi-Cデータを用いたビニングツールの開発","第10回生命医薬情報学連合大会IIBMP2021",,,,,,2021,Sept. "Rei Kajitani,Hideki Noguchi,Yasuhiro Gotoh,Yoshitoshi Ogura,Dai Yoshimura,Miki Okuno,Atsushi Toyoda,Tomomi Kuwahara,Tetsuya Hayashi,Takehiko Itoh","MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features",,"Nucleic Acids Research",,,," gkab831",2021,Sept. "Hideaki Yuasa,Rei Kajitani,Yuta Nakamura,Kazuki Takahashi,Miki Okuno,Fumiya Kobayashi,Takahiro Shinoda,Atsushi Toyoda,Yutaka Suzuki,Nalinee Thongtham,Zac Forsman,Omri Bronstein,Davide Seveso,Enrico Montalbetti,Coralie Taquet,Gal Eyal,Nina Yasuda,Takehiko Itoh","Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis",,"DNA Research",," 28"," 4"," dsab012",2021,Aug. "Hatashima, R.,Toyoda, A.,Kajitani,Takehiko Itoh,Nikaido, M.","A key factor for parallel evolution of hypertrophied lips in East African cichlid fishes","The 2nd AsiaEvo Conference",,,,,,2021,Aug. "畑島諒,豊田敦,梶谷嶺,伊藤武彦,二階堂雅人","東アフリカ産シクリッドで見られる唇肥大化平行進化の分子メカニズム","日本進化学会第23回東京大会",,,,,,2021,Aug. "Nakamura, H.,Aibara, M.,Kajitani, R.,Mrosso, HDJ,Mzighani, SI,Toyoda, A.,Itoh, T.,Okada, N.,Nikaido, M","Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation",,"Molecular Biology and Evolution",,,,,2021,Mar. "梶谷嶺,石井裕太,伊藤武彦","ロングおよびショートリードを活用するハイブリッド型メタゲノムアセンブラの新規開発","第15回日本ゲノム微生物学会年会",,,,,,2021,Mar. "Yong-Woon Han,Rei Kajitani,Hiroya Morimoto,Maierdan Palihati,Yumiko Kurokawa,Rie Ryusui,Bilge Argunhan,Hideo Tsubouchi,Fumiyoshi Abe,Susumu Kajiwara,Hiroshi Iwasaki,Takehiko Itoh","Draft Genome Sequence of Naganishia liquefaciens Strain N6, Isolated from the Japan Trench.",,"Microbiology Resource Announcements","American Society for Microbiology","Vol. 9","Issue 47"," e00827-20",2020,Nov. "畑島諒,豊田敦,梶谷嶺,伊藤武彦,二階堂雅人","シクリッドにおける唇肥大化の平行進化メカニズム","日本動物学会第91回大会",,,,,,2020,Sept. "畑島諒,豊田敦,梶谷嶺,伊藤武彦,二階堂雅人","シクリッドにおける唇肥大化の平行進化メカニズム解明","日本遺伝学会第92回大会",,,,,,2020,Sept. "大内俊,梶谷嶺,豊田敦,伊藤武彦","Hi-C法による染色体レベルのscaffolding,ハプロタイプ構築手法の開発と高ヘテロ接合性サンプル(イトマキヒトデ)への応用","日本動物学会第91回大会2020",,,,,,2020,Sept. "畑島諒,豊田敦,梶谷嶺,伊藤武彦,二階堂雅人","シクリッドにおける唇肥大化の平行進化メカニズム","日本進化学会第22回大会",,,,,,2020,Sept. "Naohisa Wada,Hideaki Yuasa,Rei Kajitani,Yasuhiro Gotoh,Yoshitoshi Ogura,Dai Yoshimura,Atsushi Toyoda,Sen-Lin Tang,Yukihiro Higashimura,Hugh Sweatman,Zac Forsman,Omri Bronstein,Gal Eyal,Nalinee Thongtham,Takehiko Itoh,Tetsuya Hayashi,Nina Yasuda","A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of thorns starfish, in the Indo-Pacifc",,"Microbiome",,"Vol. 8","No. 1"," 123",2020,Aug. "Takeuchi M.,Kuwahara H.,Murakami T.,Takahashi K.,Kajitani R.,Toyoda A.,Itoh T.,Ohkuma M.,Hongoh Y","Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut",,"The ISME Journal",,"Vol. 14",,"pp. 2288?2301",2020,June "Rei Kajitani,Dai Yoshimura,Yoshitoshi Ogura,Yasuhiro Gotoh,Tetsuya Hayashi,Takehiko Itoh","Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error- removal process",,"DNA Research",," 27"," 3",,2020,June "畑島諒,豊田敦,梶谷嶺,伊藤武彦,二階堂雅人","シクリッドにおける唇肥大化の平行進化メカニズム","日本動物学会関東支部第72回大会",,,,,,2020,Mar. "山部貴央,小林史弥,梶谷嶺,伊藤武彦","アゲハチョウ属5種の比較ゲノム解析","日本動物学会関東支部第72回大会",,,,,,2020,Mar. "湯淺英知,中村優太,小林史弥,安田仁奈,梶谷嶺,伊藤武彦","オニヒトデ属(Acanthaster spp.)の比較ゲノム解析","日本生態学会第67回全国大会",,,,,,2020,Mar. "Miki Okuno,Rei Kajitani,Hiroyuki Tanaka,Shuhei Mizushima,Asato Kuroiwa,Takehiko Itoh","Whole-genome sequencing and comparative analysis of Emu provides insights into sex chromosome evolution of the palaeognathae clade","Plant and Animal Genome XXVIII Conference",,,,,,2020,Jan. "Rei Kajitani,Miki Okuno,Hiroyuki Tanaka,Atsushi Toyoda,Takehiko Itoh","Platanus-allee is a de novo haplotype assembler designed for organisms with highly divergent haplotypes: an update","Plant and Animal Genome XXVIII Conference",,,,,,2020,Jan. "山崎はるか,梶谷嶺,伊藤武彦,千葉和義","イトマキヒトデ卵における母性mRNAのU修飾とRNA再利用","第42回日本分子生物学会年会",,,,,,2019,Dec. "Takayuki Enomoto,Hidefumi Nishida,Tetsuo Iwata,Akito Fujita,Kanako Nakayama,Takahiro Kashiwagi,Yasue Hatanaka,Hiro Kondo,Rei Kajitani,Takehiko Itoh,Makoto Ohmoto,Ichiro Matsumoto,Junji Hirota","Mechanism of odorant receptor class choice in mice","The 48th Naito Conference on Integrated Sensory Sciences - Pain, Itch, Smell and Taste",,,,,,2019,Oct. "Palihati Maierdan,Hideo Tsubouchi,Rei Kajitani,韓龍雲,Takehiko Itoh,Hiroshi Iwasaki","BRCA2 homolog of Cryptococcus liquefaciens required for DNA repair","酵母遺伝学フォーラム第52回研究報告会",,,,,,2019,Sept. "中村 優太,梶谷 嶺,小林 史弥,湯淺 英知,伊藤 武彦","ドラフトゲノムの不完全性が遺伝子構造アノテーションに及ぼす影響の解析","第8回生命医薬情報学連合大会",,,,,,2019,Sept. "小林 史弥,梶谷 嶺,奥野 未来,湯淺 英知,中村 優太,伊藤 武彦","ドラフトゲノムに対応した遺伝子構造アノテーション自動構築パイプラインの開発","第8回生命医薬情報学連合大会",,,,,,2019,Sept. "樋口拓人,西原秀典,梶谷嶺,豊田敦,伊藤武彦,岡田典弘,二階堂雅人","東アフリカ産淡水魚シクリッドゲノムにおける祖先多型遺伝子座の起源","日本動物学会第90回大会",,,,,,2019,Sept. "畑島諒,鈴木健太,豊田敦,梶谷嶺,伊藤武彦,二階堂雅人","シクリッドの唇肥大化における平行進化の遺伝的メカニズム解明","日本遺伝学会第91回大会",,,,,,2019,Sept. "Takayuki Enomoto,Hidefumi Nishida,Tetsuo Iwata,Akito Fujita,Kanako Nakayama,Takahiro Kashiwagi,Yasue Hatanaka,Hiro Kondo,Rei Kajitani,Takehiko Itoh,Makoto Ohmoto,Ichiro Matsumoto,Junji Hirota","Bcl11b controls the odorant receptor class choice in mice",,"Communications Biology","Springer Nature"," 2"," 1"," 296",2019,Aug. "樋口拓人,西原秀典,梶谷嶺,豊田敦,伊藤武彦,岡田典弘,二階堂雅人","ゲノムワイドなSINE 挿入解析から東アフリカ産シクリッドにおける祖先多型の持続性を解明する","日本進化学会第21回大会",,,,,,2019,Aug. "Dai Yoshimura,Rei Kajitani,Yasuhiro Gotoh,Katsuyuki Katahira,Miki Okuno,Yoshitoshi Ogura,Tetsuya Hayashi,Takehiko Itoh","Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP",,"Microbial Genomics",,,," e000261",2019,May "Rei Kajitani,Dai Yoshimura,Miki Okuno,Yohei Minakuchi,Hiroshi Kagoshima,Asao Fujiyama,Kaoru Kubokawa,Yuji Kohara,Atsushi Toyoda,Takehiko Itoh","Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions",,"Nature Communications",,,," 1702",2019,Apr. "樋口拓人,西原秀典,梶谷嶺,伊藤武彦,二階堂雅人","東アフリカシクリッドゲノムにおける祖先多型遺伝子座の起源","第1回遺伝学会分科会",,,,,,2019,Mar. "福井雅基,梶谷嶺,伊藤武彦","全ゲノムショットガンデータを利用した包括的なゲノム上のSegmental Duplication検出手法の開発","第41回日本分子生物学会年会",,,,,,2018,Nov. "岡野真佑,奥野未来,梶谷嶺,黒岩麻里,伊藤武彦","Y染色体をもたないアマミトゲネズミの遺伝子配列を用いた進化学的解析",,,,,,,2018,Nov. "篠田恭寛,梶谷嶺,小林 史弥,?橋和希,中村優太,湯淺英知,伊藤武彦","網羅的遺伝子構造予測自動アノテーションパイプラインの開発","第41回日本分子生物学会年会",,,,,,2018,Nov. "Toshiya Ando,Takeshi Matsuda,Kumiko Goto,Kimiko Hara,Akinori Ito,Junya Hirata,Joichiro Yatomi,Rei Kajitani,Miki Okuno,Katsushi Yamaguchi,Masaaki Kobayashi,Tomoyuki Takano,Yohei Minakuchi,Masahide Seki,Yutaka Suzuki,Kentaro Yano,Takehiko Itoh,Shuji Shigenobu,Atsushi Toyoda,Teruyuki Niimi","Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles",,"Nature communications","Nature Publishing Group","Vol. 9","No. 1"," 3843",2018,Sept. "樋口拓人,西原秀典,梶谷嶺,伊藤武彦,二階堂雅人","東アフリカ産シクリッド全ゲノムを対象にした祖先多型遺伝子座の網羅的探索","日本進化学会第20回大会",,,,,,2018,Aug. "Takuro Iijima,Rei Kajitani,Shinya Komata,Chung-Ping Lin,Teiji Sota,Takehiko Itoh,Haruhiko Fujiwara","Parallel evolution of Batesian mimicry supergene in two Papilio butterflies, P. polytes and P. memnon",,"Science advances","American Association for the Advancement of Science",,," eaao5416",2018,Apr. "梶?嶺,小椋義俊,後藤恭宏,林哲也,伊藤武彦","10X-Linked-reads、Mate-pairを活?したメタゲノムアセンブリ?法の開発","第12回日本ゲノム微生物学会年会",,,,,,2018,Mar. "?橋和希,梶谷嶺,湯淺英知,Nalinee Thongtham,Niphon Phongsuwan,Zac Forsman,安田仁奈,伊藤武彦","全ゲノム情報に基づく太平洋とインド洋のオニヒトデの比較解析","日本サンゴ礁学会第20回大会",,,,,,2017,Nov. "湯淺英知,梶谷嶺,?橋和希,吉村大,小椋義俊,Zac Forsman,Nalinee Thongtham,Niphon Phongsuwan,Coralie Taquet,Marc Taquet,林哲也,伊藤武彦,安田仁奈","異所的に種分化したオニヒトデ種間での受精遺伝子の進化","日本サンゴ礁学会第20回大会",,,,,,2017,Nov. "田中良樹,梶谷嶺,豊田敦,後藤友二,久保田宗一郎,伊藤武彦","ショートリードを用いたリピート配列のde novo検出法の開発",,,,,,,2017,Sept. "野川駿,岩永紗弥,梶谷嶺,越智洋絵,鈴木穣,千葉和義,伊藤武彦","イトマキヒトデの卵成熟前後におけるmRNA3’末端の網羅的解析","日本動物学会第88回大会",,,,,,2017,Sept. "梶谷嶺,吉村大,奥野未来,豊田敦,伊藤武彦","Platanus2: a de novo haplotype assembler enabling comprehensive accesses to divergent heterozygous region","第6回生命医薬情報学連合大会(IIBMP2017)",,,,,,2017,Sept. "梶谷嶺,小椋義俊,後藤恭宏,吉村大,奥野未来,林哲也,伊藤武彦","メタゲノムショットガンデータからの株ハプロタイプ配列構築手法の開発","第11回日本ゲノム微生物学会年会",,,,,,2017,Mar. "奥野未来,立花広太,吉村大,森田有貴,梶谷嶺,古俣麻希子,白髭克彦,森川あすか,伊藤武彦","皮膚常在細菌Propionibacterium acnesの全ゲノム比較解析","第11回日本ゲノム微生物学会年会",,,,,,2017,Mar. "森田有貴,奥野未来,吉村大,立花広太,梶谷嶺,古俣麻希子,白髭克彦,森川あすか,伊藤武彦","次世代シークエンサを用いたSLSTによるPropionibacterium acnesタイピング解析","第11回日本ゲノム微生物学会年会",,,,,,2017,Mar. "吉村大,後藤恭宏,小椋義俊,梶谷嶺,奥野未来,林哲也,伊藤武彦","全ゲノム配列情報を用いた菌株間系統樹推定パイプラインの開発","第11回日本ゲノム微生物学会年会",,,,,,2017,Mar. "番匠康雄,梶谷嶺,伊藤武彦","PacBioおよびIlluminaシークエンサを用いた新規アセンブル手法の開発","第11回日本ゲノム微生物学会年会",,,,,,2017,Mar. "和田陽介,伊藤武彦,梶谷嶺","全ゲノムシークエンスデータに基づいた高精度配列構造変異検出プロトコルの構築","第39回日本分子生物学会年会",,,,,,2016,Nov. "Vicky L Hunt,Isheng J Tsai,Avril Coghlan,Adam J Reid,Nancy Holroyd,Bernardo J Foth,Alan Tracey,James A Cotton,Eleanor J Stanley,Helen Beasley,Hayley M Bennett,Karen Brooks,Bhavana Harsha,Rei Kajitani,Arpita Kulkarni,Dorothee Harbecke,Eiji Nagayasu,Sarah Nichol,Yoshitoshi Ogura,Michael A Quail,Nadine Randle,Dong Xia,Norbert W Brattig,Hanns Soblik,Diogo M Ribeiro,Alejandro Sanchez-Flores,Tetsuya Hayashi,Takehiko Itoh,Dee R Denver,Warwick Grant,Jonathan D Stoltzfus,James B Lok,Haruhiko Murayama,Jonathan Wastling,Adrian Streit,Taisei Kikuchi,Mark Viney,Matthew Berriman","The genomic basis of parasitism in the Strongyloides Glade of nematodes",,"Nature Genetics",,"Vol. 48","No. 3","pp. 299-307",2016,Mar. "梶谷嶺,小椋義俊,林哲也,伊藤武彦","低コスト・高精度なバクテリアゲノム配列構築手法の開発","第10回日本ゲノム微生物学会年会",,,,,,2016,Mar. "Miki Okuno,Rei Kajitani,Rie Ryusui,Hiroya Morimoto,Yukiko Kodama,Takehiko Itoh","Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization",,"DNA Research",,"Vol. 23","No. 1","pp. 67-80",2016,Feb. "千代島隆広,立花和則,梶谷嶺,岸本健雄,伊藤武彦","イトマキヒトデのde novoアセンブリ","第38回日本分子生物学会年会",,,,,,2015,Dec. "Hideki Nishikawa,Takuro Iijima,Rei Kajitani,Junichi Yamaguchi,Toshiya Ando,Yutaka Suzuki,Sumio Sugano,Asao Fujiyama,Shunichi Kosugi,Hideki Hirakawa,Satoshi Tabata,Katsuhisa Ozaki,Hiroya Morimoto,Kunio Ihara,Madoka Obara,Hiroshi Hori,Takehiko Itoh,Haruhiko Fujiwara","A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly",,"Nature Genetics",,"Vol. 47","No. 4","pp. 405-409",2015,Apr. "梶谷嶺","ハイスルーフ?ットDNA シークエンステ?ータによる全ケ?ノム配列の構築と解析に関する研究",,,,,,,2015,Mar. "梶谷嶺,野口英樹,桑原知己,小椋義俊,林哲也,伊藤武彦","メタゲノム用de novoアセンブリ・クラスタリングツールMetaPlatanusの開発","第9回日本ゲノム微生物学会年会",,,,,,2015,Mar. "梶谷嶺","ハイスルーフ?ットDNA シークエンステ?ータによる全ケ?ノム配列の構築と解析に関する研究",,,,,,,2015,Mar. "梶谷嶺","ハイスルーフ?ットDNA シークエンステ?ータによる全ケ?ノム配列の構築と解析に関する研究",,,,,,,2015,Mar. "Rei Kajitani,Kouta Toshimoto,Hideki Noguchi,Atsushi Toyoda,Yoshitoshi Ogura,Miki Okuno,Mitsuru Yabana,Masayuki Harada,Eiji Nagayasu,Haruhiko Maruyama,Yuji Kohara,Asao Fujiyama,Tetsuya Hayashi,Takehiko Itoh","Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads",,"Genome Research",,"Vol. 24","No. 8","pp. 1384-1395",2014,Aug. "梶谷嶺,小椋義俊,桑原知己,林哲也,伊藤武彦","メタゲノム用de novoアセンブラの開発およびIlluminaデータを用いたベンチマーク","第8回日本ゲノム微生物学会年会",,,,,,2014,Mar. "Masato Nikaido,Hideki Noguchi,Atsushi Toyoda,Yutaka Suzuki,Rei Kajitani,Hikoyuu Suzuki,Miki Okuno,Mitsuto Aibara,Benjamin P. Ngatunga,Semvua Mzighani,Hassan W.J. Kalombo,Kawilarang W.A. Masengi,Josef Tuda,Sadao Nogami,Ryuichiro Maeda,Masamitsu Iwata,Yoshitaka Abe,KOJI FUJIMURA,Masataka Okabe,Takanori Amano,Akiteru Maeno,Toshihiko Shiroishi,Sumio Sugano,Yuji Kohara,Asao Fujiyama,NORIHIRO OKADA","Coelacanth genomes reveal signatures for evolutionary transition from water to land",,"Genome Research","Cold Spring Harbor Laboratory Press","Vol. 23","No. 10","pp. 1740-1748",2013,Oct. "梶谷嶺,伊藤武彦","メタゲノムデータ用de novoアセンブラーの開発","第7回日本ゲノム微生物学会年会",,,,,,2013,Mar. "梶谷嶺,伊藤武彦","高ヘテロ接合性ゲノムのde novoアセンブリ","第35回日本分子生物学会年会",,,,,,2012,Dec. "梶谷嶺,野口英樹,伊藤武彦","新規ゲノムアセンブラー:Platanus","第34回日本分子生物学会年会",,,,,,2011,Dec.