@article{CTT100863094,
  author = {Rei Kajitani and Hideki Noguchi and Yasuhiro Gotoh and Yoshitoshi Ogura and Dai Yoshimura and Miki Okuno and Atsushi Toyoda and Tomomi Kuwahara and Tetsuya Hayashi and Takehiko Itoh},
  title = {MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features},
  journal = {Nucleic Acids Research},
  year = 2021,
}

@article{CTT100852239,
  author = {Naohisa Wada and Hideaki Yuasa and Rei Kajitani and Yasuhiro Gotoh and Yoshitoshi Ogura and Dai Yoshimura and Atsushi Toyoda and Sen-Lin Tang and Yukihiro Higashimura and Hugh Sweatman and Zac Forsman and Omri Bronstein and Gal Eyal and Nalinee Thongtham and Takehiko Itoh and Tetsuya Hayashi and Nina Yasuda},
  title = {A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of thorns starfish, in the Indo-Pacifc},
  journal = {Microbiome},
  year = 2020,
}

@article{CTT100852372,
  author = {Rei Kajitani and Dai Yoshimura and Yoshitoshi Ogura and Yasuhiro Gotoh and Tetsuya Hayashi and Takehiko Itoh},
  title = {Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error- removal process},
  journal = {DNA Research},
  year = 2020,
}

@article{CTT100853280,
  author = {Dai Yoshimura and Rei Kajitani and Yasuhiro Gotoh and Katsuyuki Katahira and Miki Okuno and Yoshitoshi Ogura and Tetsuya Hayashi and Takehiko Itoh},
  title = {Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP},
  journal = {Microbial Genomics},
  year = 2019,
}

@article{CTT100853289,
  author = {Osamu Sawada and Yasuhiro Gotoh and Takako Taniguchi and Shota Furukawa and Dai Yoshimura and Satomi Sasaki and Haruki Shida and Yoshihiro Kusunoki and Tsuyoshi Yamamura and Ken Furuya and Takehiko Itoh and Tetsuya Horita and Tetsuya Hayashi and Naoaki Misawa},
  title = {Genome Sequencing Verifies Relapsed Infection of  Helicobacter cinaedi},
  journal = {Open Forum Infectious Diseases},
  year = 2019,
}

@article{CTT100853293,
  author = {Rei Kajitani and Dai Yoshimura and Miki Okuno and Yohei Minakuchi and Hiroshi Kagoshima and Asao Fujiyama and Kaoru Kubokawa and Yuji Kohara and Atsushi Toyoda and Takehiko Itoh},
  title = {Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions},
  journal = {Nature Communications},
  year = 2019,
}

@article{CTT100747028,
  author = {Arzuba Akter and Tadasuke Ooka and Yasuhiro Gotoh and Seigo Yamamoto and Hiromi Fujita and Fumio Terasoma and Kouji Kida and Masakatsu Taira and Fumiko Nakadouzono and Mutsuyo Gokuden and Manabu Hirano and Mamoru Miyashiro and Kouichi Inari and Yukie Shimazu and Kenji Tabara and Atsushi Toyoda and Dai Yoshimura and Takehiko Itoh and Tomokazu Kitano and Mitsuhiko P. Sato and Keisuke Katsura and Shakhinur Islam Mondal and Yoshitoshi Ogura and Shuji Ando and Tetsuya Hayashi},
  title = {Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan},
  journal = {Genome Biology and Evolution},
  year = 2017,
}

@inproceedings{CTT100851546,
  author = {服部淳 and 吉村大 and 谷口愛樹 and 林哲也 and 伊藤武彦},
  title = {Comprehensive detection of insertion sequences in bacterial genomes},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100809300,
  author = {服部 淳 and 伊藤 武彦 and 吉村 大},
  title = {Comprehensive detection of insertion sequences in bacterial genomes},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100767027,
  author = {吉村⼤ and 後藤 恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を⽤いた近縁菌株間⾼精度SNP検出パイプラインBactSNPの開発},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100786625,
  author = {湯淺英知 and 梶谷嶺 and 髙橋和希 and 吉村大 and 小椋義俊 and Zac Forsman and Nalinee Thongtham and Niphon Phongsuwan and Coralie Taquet and Marc Taquet and 林哲也 and 伊藤武彦 and 安田仁奈},
  title = {異所的に種分化したオニヒトデ種間での受精遺伝子の進化},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767803,
  author = {梶谷嶺 and 吉村大 and 奥野未来 and 豊田敦 and 伊藤武彦},
  title = {Platanus2: a de novo haplotype assembler enabling comprehensive accesses to divergent heterozygous region},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767847,
  author = {森田有貴 and 奥野未来 and 吉村大 and 立花広太 and 梶谷嶺 and 古俣麻希子 and 白髭克彦 and 森川あすか and 伊藤武彦},
  title = {次世代シークエンサを用いたSLSTによるPropionibacterium acnesタイピング解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767839,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 梶谷嶺 and 奥野未来 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を用いた菌株間系統樹推定パイプラインの開発},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767837,
  author = {梶谷嶺 and 小椋義俊 and 後藤恭宏 and 吉村大 and 奥野未来 and 林哲也 and 伊藤武彦},
  title = {メタゲノムショットガンデータからの株ハプロタイプ配列構築手法の開発},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767834,
  author = {後藤恭宏 and 片平雄之 and 吉村大 and 伊藤武彦 and 小椋義俊 and 林哲也},
  title = {超高精度分子疫学解析で迫る病原菌の動態},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767832,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {ゲノム配列情報を用いた近縁菌株間高精度 SNP 検出手法の開発：病原菌感染経路推測への応用},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767850,
  author = {奥野未来 and 立花広太 and 吉村大 and 森田有貴 and 梶谷嶺 and 古俣麻希子 and 白髭克彦 and 森川あすか and 伊藤武彦},
  title = {皮膚常在細菌Propionibacterium acnesの全ゲノム比較解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767899,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {次世代シークエンサを用いた菌株間 SNP 検出における問題点と検出プロトコルの構築},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100767890,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発：病原菌感染経路推測への応用},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100767911,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発：病原菌感染経路推測への応用},
  booktitle = {},
  year = 2015,
}

@misc{CTT100795965,
  author = {吉村大},
  title = {高精度ゲノム解析手法の確立による大腸菌O157の大規模比較研究},
  year = 2019,
}

@misc{CTT100841119,
  author = {吉村大},
  title = {高精度ゲノム解析手法の確立による大腸菌O157の大規模比較研究},
  year = 2019,
}

@misc{CTT100795966,
  author = {吉村大},
  title = {高精度ゲノム解析手法の確立による大腸菌O157の大規模比較研究},
  year = 2019,
}

@misc{CTT100795964,
  author = {吉村大},
  title = {高精度ゲノム解析手法の確立による大腸菌O157の大規模比較研究},
  year = 2019,
}



@phdthesis{CTT100795965,
  author = {吉村大},
  title = {高精度ゲノム解析手法の確立による大腸菌O157の大規模比較研究},
  school = {東京工業大学},
  year = 2019,
}

@phdthesis{CTT100841119,
  author = {吉村大},
  title = {高精度ゲノム解析手法の確立による大腸菌O157の大規模比較研究},
  school = {東京工業大学},
  year = 2019,
}

@phdthesis{CTT100795966,
  author = {吉村大},
  title = {高精度ゲノム解析手法の確立による大腸菌O157の大規模比較研究},
  school = {東京工業大学},
  year = 2019,
}

@phdthesis{CTT100795964,
  author = {吉村大},
  title = {高精度ゲノム解析手法の確立による大腸菌O157の大規模比較研究},
  school = {東京工業大学},
  year = 2019,
}