@article{CTT100596607,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis},
  journal = {Journal of Bioinformatics and Computational Biology},
  year = 2009,
}

@inproceedings{CTT100876222,
  author = {大上雅史 and 松崎由理 and 松崎裕介 and 佐藤智之 and 秋山泰},
  title = {MEGADOCK：立体構造情報からの網羅的タンパク質間相互作用予測とそのシステム生物学への応用},
  booktitle = {情報処理学会論文誌数理モデル化と応用（TOM）},
  year = 2010,
}

@inproceedings{CTT100619146,
  author = {Matsuzaki Yuri. and Ohue Masahito. and Matsuzaki Yusuke. and Sato Toshuyuki and Akiyama Yutaka},
  title = {A computational screening system of protein-protein interactions: connecting protein structural information to biological pathway estimation},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100876469,
  author = {Masahito Ohue and Yuri Matsuzaki and Yusuke Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {n silico prediction of PPI network with structure-based all-to-all docking},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100610964,
  author = {川島一彦 and 佐々木智大 and 松崎裕},
  title = {ペーパーブリッジコンテストーおもしろ理科教室},
  booktitle = {第65回土木学会全国大会},
  year = 2010,
}

@inproceedings{CTT100605237,
  author = {大上雅史 and 松崎由理 and 松崎裕介 and 佐藤智之 and 秋山泰},
  title = {MEGADOCK：立体構造情報からの網羅的タンパク質間相互作用予測とそのシステム生物学への応用},
  booktitle = {研究報告数理モデル化と問題解決（MPS）},
  year = 2010,
}

@inproceedings{CTT100604306,
  author = {Masahito Ohue and Yusuke Matsuzaki and Yuri Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {MEGADOCK: An all-to-all protein-protein interaction prediction system -- Improving the accuracy using boosting and binding energy reranking.},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100600835,
  author = {大上雅史 and 松崎裕介 and 松崎由理 and 佐藤智之 and 秋山 泰},
  title = {エネルギー計算に基づくリランキングとクラスタリングを用いた網羅的タンパク質間相互作用予測手法の提案},
  booktitle = {第2回データ工学と情報マネジメントに関するフォーラム(DEIM2010)},
  year = 2010,
}

@inproceedings{CTT100604304,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Masahito Ohue and Toshiyuki Sato and Yutaka Akiyama},
  title = {A computational screening system of protein-protein interactions: connecting structural information to pathway estimation.},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100604322,
  author = {松崎裕介 and 大上雅史 and 松崎由理 and 佐藤智之 and 関嶋政和 and 秋山泰},
  title = {タンパク質の特性に基づくunboundドッキングのための剛体予測手法の改良},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2010,
}

@inproceedings{CTT100600836,
  author = {大上雅史 and 松崎裕介 and 松崎由理 and 佐藤智之 and 秋山泰},
  title = {リランキングを用いたタンパク質ドッキングの精度向上と網羅的タンパク質間相互作用予測への応用},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2010,
}

@inproceedings{CTT100593788,
  author = {Masahito Ohue and Yusuke Matsuzaki and Yuri Matsuzaki and Yutaka Akiyama},
  title = {Improvement of all-to-all protein-protein interaction prediction system MEGADOCK},
  booktitle = {The 20th International Conference on Genome Informatics Workshop Poster Proceedings},
  year = 2009,
}

@inproceedings{CTT100593481,
  author = {Yusuke Matsuzaki and Yuri Matsuzaki and Masakazu Sekijima and Yutaka Akiyama},
  title = {Protein structure sampling based on molecular dynamics and improvement of docking prediction},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593478,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Masahito Ohue and Toshiyuki Sato and Yutaka Akiyama},
  title = {A computational screening system of protein-protein interactions using tertiary structure data: an application to signaling pathway analysis.},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593486,
  author = {Masahito Ohue and Yusuke Matsuzaki and Yuri Matsuzaki and Yutaka Akiyama},
  title = {Improvement of all-to-all protein-protein interaction prediction system MEGADOCK},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100590384,
  author = {松崎裕介 and 松崎由理 and 関嶋政和 and 秋山泰},
  title = {分子動力学法に基づくタンパク質構造サンプリングとドッキング予測の改良},
  booktitle = {情報処理学会研究報告},
  year = 2009,
}

@inproceedings{CTT100589920,
  author = {大上雅史 and 松崎裕介 and 松崎由理 and 秋山泰},
  title = {網羅的タンパク質間相互作用予測システムにおける判別精度の改良},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2009,
}

@inproceedings{CTT100589560,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Masahito Ohue and Toshiyuki Sato and Yutaka Akiyama},
  title = {In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100586434,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Masahito Ohue and Toshiyuki Sato and Yutaka Akiyama},
  title = {A computational screening system of protein-protein interactions using tertiary structure data: with application to pathway analysis},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100576892,
  author = {大上雅史 and 松崎裕介 and 松崎由理 and 佐藤智之 and 秋山泰},
  title = {物理化学的相互作用の導入による網羅的タンパク質間相互作用予測システムの高精度化},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2009,
}

@inproceedings{CTT100572568,
  author = {松崎 由理 and 松崎 裕介 and 大上雅史 and 佐藤 智之 and 秋山 泰},
  title = {ドッキング後処理によるPPI検出システムの応用と評価～EGFRシグナル伝達系への適用にむけて},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100576744,
  author = {Yutaka Akiyama and Toshiyuki Sato and Yusuke Matsuzaki and Yuri Matsuzaki},
  title = {MEGADOCK - A massively parallel software system for all-to-all protein docking analysis with pre-calculated Fourier library of protein structures},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100576738,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {In silico screening method of protein-protein interactions using all-to-all rigid docking and clustering: with application to pathway analysis},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571745,
  author = {松崎 由理 and 松崎 裕介 and 佐藤 智之 and 秋山 泰},
  title = {タンパク質ドッキング予測プログラムによるシグナル伝達系のタンパク質間相互作用解析},
  booktitle = {情報処理学会 研究報告},
  year = 2008,
}

@inproceedings{CTT100571742,
  author = {松崎 裕介 and 松崎 由理 and 佐藤 智之 and 秋山 泰},
  title = {タンパク質間相互作用予測のためのドッキング後処理システムの開発},
  booktitle = {情報処理学会 研究報告},
  year = 2008,
}

@inproceedings{CTT100571758,
  author = {秋山 泰 and 松崎 裕介 and 佐藤 智之 and 藤原 康広 and 松崎 由理 and 小西 史一},
  title = {形状相補性に基づくタンパク質間相互作用予測ソフトウェアと大規模並列計算機上での網羅的な予測環境の開発},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571760,
  author = {松崎 由理 and 松崎 裕介 and 佐藤 智之 and 秋山 泰},
  title = {細菌の走化性系への適用によるタンパク質間相互作用予測プログラムの評価},
  booktitle = {},
  year = 2008,
}