@book{CTT100700191,
  author = {西原秀典 and 岡田典弘},
  title = {SINEに由来するエンハンサーが寄与した哺乳類の進化},
  publisher = {農文協},
  year = 2015,
}

@book{CTT100674737,
  author = {西原秀典 and 岡田典弘},
  title = {シーラカンスゲノム中の反復配列の特徴},
  publisher = {NIS Inc.},
  year = 2014,
}

@book{CTT100673636,
  author = {二階堂雅人 and 岡田典弘},
  title = {シーラカンスゲノム中に隠されていた脊椎動物陸上化のカギ},
  publisher = {（財）バイオインダストリー協会},
  year = 2014,
}

@book{CTT100673637,
  author = {二階堂雅人 and 岡田典弘},
  title = {シーラカンスのもう一つの繁殖地：タンザニア},
  publisher = {},
  year = 2014,
}

@book{CTT100673638,
  author = {二階堂雅人 and 岡田典弘},
  title = {シーラカンスゲノム進化：進化速度・嗅覚・前適応},
  publisher = {},
  year = 2014,
}

@book{CTT100674720,
  author = {岡田典弘 and 西原秀典},
  title = {哺乳類 ―レトロポゾン法によって明らかになった哺乳類の進化},
  publisher = {NIS Inc.},
  year = 2013,
}

@book{CTT100643873,
  author = {西原秀典 and 丸山茂徳 and 岡田典弘},
  title = {大陸移動と哺乳類の進化},
  publisher = {NIS Inc.},
  year = 2012,
}

@book{CTT100673633,
  author = {二階堂雅人 and 鈴木彦有 and 岡田典弘},
  title = {シクリッド嗅覚研究の最前線},
  publisher = {},
  year = 2012,
}

@book{CTT100673634,
  author = {二階堂雅人 and 岡田典弘},
  title = {シクリッドゲノムプロジェクトの現状},
  publisher = {},
  year = 2012,
}

@book{CTT100691765,
  author = {半田宏 and 伊藤武彦 and 岩崎博史 and 岡田典弘 and 岸本健雄 and 工藤明 and 白髭克彦 and 田中幹子 and 徳永万喜洋 and 広瀬茂久 and 村上聡 and 菊池韶彦},
  title = {ハートウェル遺伝学-遺伝子、ゲノム、そして生命システムへ-},
  publisher = {メディカルサイエンスインターナショナル},
  year = 2010,
}

@book{CTT100673632,
  author = {二階堂雅人 and 岡田典弘},
  title = {哺乳類における海への再侵入と進化},
  publisher = {},
  year = 2009,
}

@book{CTT100673631,
  author = {大原 海 and 二階堂 雅人 and 伊藤 敦子 and 茂木 一孝 and 岡村 裕昭 and 岡田 典弘 and 森 裕司 and 山岸 公子},
  title = {ヤギ・ヒツジ・ウシ間におけるV1R 構造の類似性について},
  publisher = {},
  year = 2008,
}

@book{CTT100673630,
  author = {二階堂雅人 and Oliver Piskurek and 岡田典弘},
  title = {歯鯨亜目の単系統性に関するこれまでの研究とSINE 法によるその再検証},
  publisher = {},
  year = 2008,
}

@book{CTT100673628,
  author = {二階堂雅人 and 佐々木剛 and 牧野瞳 and 後藤睦夫 and 上田真久 and Luis A. Pastene and 岡田典弘},
  title = {SINE挿入を指標とした系統解析によって明らかとなったヒゲクジラ類の系統関係と過去の急速な放散},
  publisher = {},
  year = 2005,
}

@book{CTT100673629,
  author = {二階堂雅人 and 岡田典弘},
  title = {SINE挿入多型を指標とした食肉製品の迅速な種判別システムの開発},
  publisher = {},
  year = 2005,
}

@book{CTT100499041,
  author = {Okada N and Shedlock AM and Nikaido M. },
  title = {Retroposon mapping in molecular systematics.},
  publisher = {Methods. Mol. Biol.},
  year = 2004,
}

@book{CTT100673625,
  author = {岡田典弘 and 二階堂雅人},
  title = {“ＳＩＮＥ”を使った食用肉のＤＮＡ鑑定},
  publisher = {工業調査会},
  year = 2004,
}

@book{CTT100673627,
  author = {岡田典弘 and 梶川正樹 and 二階堂雅人 and 大島一彦},
  title = {SINEとLINEによるゲノムの多様化機構},
  publisher = {},
  year = 2004,
}

@book{CTT100673623,
  author = {岡田典弘 and 二階堂雅人},
  title = {クジラの進化の真実},
  publisher = {},
  year = 2003,
}

@article{CTT100875304,
  author = {Trieu-Duc, V. and Oshima, K. and Matsumura, K. and Iwasaki, Y. and Chi-Yuk Chiu and Nikaido, M. and Okada, N.},
  title = {Alternative splicing plays key roles in response to stress across different stages of fighting in the fish Betta splendens},
  journal = {BMC Genomics},
  year = 2022,
}

@article{CTT100875298,
  author = {Nikaido, M. and Nishihara, H. and Okada, N.},
  title = {SINEs as Credible Signs to Prove Common Ancestry in the Tree of Life: A Brief Review of Pioneering Case Studies in Retroposon Systematics},
  journal = {genes},
  year = 2022,
}

@article{CTT100875309,
  author = {Trieu-Duc, V. and Iwasaki, Y. and Oshima, K. and MT. and Nikaido, M. and Okada, N.},
  title = {Data of RNA-seq transcriptomes in the brain associated with aggression in males of the fish Betta splendens},
  journal = {Data in Brief},
  year = 2021,
}

@article{CTT100851957,
  author = {Trieu-Duc, V. and Iwasaki, Y. and Oshima, K. and Chiu and MT. and Nikaido, M. and Okada, N.},
  title = {A unique neurogenomic state emerges after aggressive confrontations in males of the fish Betta splendens},
  journal = {Gene},
  year = 2021,
}

@article{CTT100851956,
  author = {Nakamura, H. and Aibara, M. and Kajitani, R. and Mrosso, HDJ and Mzighani,  SI and Toyoda, A. and Itoh, T. and Okada, N. and Nikaido, M},
  title = {Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation},
  journal = {Molecular Biology and Evolution},
  year = 2021,
}

@article{CTT100807916,
  author = {Yoko Arai and Andrzej W. Cwetsch and Eva Coppola and Sara Cipriani and Hidenori Nishihara and Hiroaki Kanki and Yoann Saillour and Betty Freret-Hodara and Annie Dutriaux and Norihiro Okada and Hideyuki Okano and Colette Dehay and Jeannette Nardelli and Pierre Gressens and Tomomi Shimogori and Giuseppe D’Onofrio and Alessandra Pierani},
  title = {Evolutionary Gain of Dbx1 Expression Drives Subplate Identity in the Cerebral Cortex},
  journal = {Cell Reports},
  year = 2019,
}

@article{CTT100810861,
  author = {Takuno Shohei and Ryutaro Miyagi and Jun-ichi Onami and Shiho Takahashi-Kariyazono and Akie Sato and Herbert Tichy and Masato Nikaido and Mitsuto Aibara and Shinji Mizoiri and Hillary D. J. Mrosso and Semvua I. Mzighani and Norihiro Okada and Yohey Terai},
  title = {Patterns of genomic differentiation between two Lake Victoria cichlid species, Haplochromis pyrrhocephalus and H. sp. 'macula'},
  journal = {BMC Evolutionary Biology},
  year = 2019,
}

@article{CTT100726732,
  author = {Hidenori Nishihara and Naoki Kobayashi and Chiharu Kimura-Yoshida and Kuo Yan and Olga Bormuth and Qiong Ding and Akiko Nakanishi and Takeshi Sasaki and Mika Hirakawa and Kenta Sumiyama and Yasuhide Furuta and Victor Tarabykin and Isao Matsuo and Norihiro Okada},
  title = {Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate},
  journal = {PLoS Genetics},
  year = 2016,
}

@article{CTT100711023,
  author = {Nishihara H and Plazzi F and Passamonti M and Okada N},
  title = {MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals.},
  journal = {Genome Biology and Evolution},
  year = 2016,
}

@article{CTT100700192,
  author = {Kuramoto, T. and Nishihara, H. and Watanabe, M. and Okada, N.},
  title = {Determining the Position of Storks on the Phylogenetic Tree of Waterbirds by Retroposon Insertion Analysis},
  journal = {Genome Biology and Evolution},
  year = 2015,
}

@article{CTT100810845,
  author = {Brawand D and Wagner CE and Li YI and Malinsky M and Keller I and Fan S and Simakov O and Ng AY and Lim ZW and Bezault E and Turner-Maier J and Johnson J and Alcazar R and Noh HJ and Russell P and Aken B and Alfoldi J and Amemiya C and Azzouzi N and Baroiller JF and Barloy-Hubler F and Berlin A and Bloomquist R and Carleton KL and Conte MA and D'Cotta H and Eshel O and Gaffney L and Galibert F and Gante HF and Gnerre S and Greuter L and Guyon R and Haddad NS and Haerty W and Harris RM and Hofmann HA and Hourlier T and Hulata G and Jaffe DB and Lara M and Lee AP and MacCallum I and Mwaiko S and Nikaido M and Nishihara H and Ozouf-Costaz C and Penman DJ and Przybylski D and Rakotomanga M and Renn SC and Ribeiro FJ and Ron M and Salzburger W and Sanchez-Pulido L and Santos ME and Searle S and Sharpe T and Swofford R and Tan FJ and Williams L and Young S and Yin S and Okada N and Kocher TD and Miska EA and Lander ES and Venkatesh B and Fernald RD and Meyer A and Ponting CP and Streelman JT and Lindblad-Toh K and Seehausen O and Di Palma F},
  title = {The genomic substrate for adaptive radiation in African cichlid fish},
  journal = {Nature},
  year = 2014,
}

@article{CTT100673639,
  author = {Nikaido M and Ota T and Hirata T and Satta and Saito Y and Aibara M and Semvua Mzighani and Kimiko Hagino-Yamagishi and Sturmbauer C and Okada N.},
  title = {Multiple episodic evolution events in V1R receptor genes of East-African cichlids.},
  journal = {Genome Biol. Evol.},
  year = 2014,
}

@article{CTT100810841,
  author = {Masato Nikaido and Hideki Noguchi and Atsushi Toyoda and Yutaka Suzuki and Rei Kajitani and Hikoyuu Suzuki and Miki Okuno and Mitsuto Aibara and Benjamin P. Ngatunga and Semvua Mzighani and Hassan W.J. Kalombo and Kawilarang W.A. Masengi and Josef Tuda and Sadao Nogami and Ryuichiro Maeda and Masamitsu Iwata and Yoshitaka Abe and KOJI FUJIMURA and Masataka Okabe and Takanori Amano and Akiteru Maeno and Toshihiko Shiroishi and Sumio Sugano and Yuji Kohara and Asao Fujiyama and NORIHIRO OKADA},
  title = {Coelacanth genomes reveal signatures for evolutionary transition from water to land},
  journal = {Genome Research},
  year = 2013,
}

@article{CTT100673542,
  author = {Kawashima Y and Nishihara H and Akasaki T and Nikaido M and Tsuchiya K and Segawa S and Okada N.},
  title = {The complete mitochondrial genomes of deep-sea squid (Bathyteuthis abyssicola), bob-tail squid (Semirossia patagonica) and four giant cuttlefish (Sepia apama, S. latimanus, S. lycidas and S. pharanois), and their application to the phylogenetic analysis of Decapodiformes.},
  journal = {Mol. Phylogenet. Evol.},
  year = 2013,
}

@article{CTT100673543,
  author = {Nikaido M and Hikoyuu Suzuki and Toyoda A and Fujiyama A and Hagino-Yamagishi K and Kocher TD and Carleton KL and Okada N.},
  title = {Lineage specific expansion of V2R receptor (OlfC) genes in cichlids may contribute to diversification in amino acid detection.},
  journal = {Genome Biol. Evol.},
  year = 2013,
}

@article{CTT100643868,
  author = {Akiko Nakanishi and Naoki Kobayashi and Asuka Suzuki-Hirano and Hidenori Nishihara and Takeshi Sasaki and Mika Hirakawa and Kenta Sumiyama and Tomomi Shimogori and Norihiro Okada},
  title = {A SINE-Derived Element Constitutes a Unique Modular Enhancer for Mammalian Diencephalic Fgf8},
  journal = {PLoS ONE},
  year = 2012,
}

@article{CTT100646724,
  author = {Koichiro Higasa and Masato Nikaido and Taro L. Saito and Jun Yoshimura and Yutaka Suzuki and Hikoyu Suzuki and Hidenori Nishihara and Mitsuto Aibara and Benjamin P. Ngatunga and Hassan W.J. Kalombo and Sumio Sugano and Shinichi Morishita and Norihiro Okada},
  title = {Extremely slow rate of evolution in the HOX cluster revealed by comparison between Tanzanian and Indonesian coelacanths},
  journal = {Gene},
  year = 2012,
}

@article{CTT100634238,
  author = {Yuichi Yuzawa and Hidenori Nishihara and Tsuyoshi Haraguchi and Shinji Masuda and Mie Shimojima and Atsushi Shimoyama and Hideya Yuasa and Norihiro Okada and Hiroyuki Ohta},
  title = {Phylogeny of Galactolipid Synthase Homologs Together with Their Enzymatic Analyses Revealed A Possible Origin and Divergence Time for Photosynthetic Membrane Biogenesis},
  journal = {DNA Research},
  year = 2012,
}

@article{CTT100633245,
  author = {Kensuke Tashiro and Anne Teissier and Naoki Kobayashi and Akiko Nakanishi and Takeshi Sasaki and Kuo Yan and Victor Tarabykin and Lisa Vigier and Kenta Sumiyama and Mika Hirakawa and Hidenori Nishihara and Alessandra Pierani and Norihiro Okada},
  title = {A Mammalian Conserved Element Derived from SINE Displays Enhancer Properties Recapitulating Satb2 Expression in Early-Born Callosal Projection Neurons},
  journal = {PLoS ONE},
  year = 2011,
}

@article{CTT100633244,
  author = {Kohta Yoshida and Yohey Terai and Shinji Mizoiri and Mitsuto Aibara and Hidenori Nishihara and Masakatsu Watanabe and Asato Kuroiwa and Hirohisa Hirai and Yuriko Hirai and Yoichi Matsuda and Norihiro Okada},
  title = {B Chromosomes Have a Functional Effect on Female Sex Determination in Lake Victoria Cichlid Fishes},
  journal = {PLoS Genetics},
  year = 2011,
}

@article{CTT100624189,
  author = {Nagai H and Terai Y and Sugawara T and Imai H and Nishihara H and Hori M and Okada N.},
  title = {Reverse evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika},
  journal = {Molecular Biology and Evolution},
  year = 2011,
}

@article{CTT100611591,
  author = {Yumie Murata and Mika Tamura and Yusuke Aita and Yasunori Murakami and Koji Fujimura and Masataka Okabe and Norihiro Okada and Mikiko Tanaka},
  title = {Allometric growth of trunk-tail lead to the rostral shift of pelvic fin in teleost fishes},
  journal = {Dev. Biol.},
  year = 2010,
}

@article{CTT100624188,
  author = {Okada N and Sasaki T and Shimogori T and Nishihara H.},
  title = {Emergence of mammals by emergency: exaptation},
  journal = {Genes to Cells},
  year = 2010,
}

@article{CTT100646725,
  author = {Akasaki T and Nikaido M and Nishihara H and Tsuchiya K and Segawa S and Okada N.},
  title = {Characterization of a novel SINE superfamily from invertebrates: "Ceph-SINEs" from the genomes of squids and cuttlefish},
  journal = {Gene},
  year = 2010,
}

@article{CTT100646710,
  author = {Semvua Mzighani and M. Nikaido and M. Takeda and O. Seehausen and Y. L. Budeba and B. P. Ngatunga and E. F. B. Katunzi and Mitsuto Aibara and Shinji MIZOIRI and Tetsu SATO and H. Tachida and NORIHIRO OKADA},
  title = {Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria-An analysis based on SINEs and mitochondrial DNA},
  journal = {Gene},
  year = 2010,
}

@article{CTT100585054,
  author = {Mika Hirakawa and Hidenori Nishihara and Minoru Kanehisa and Norihiro Okada},
  title = {Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes},
  journal = {GENE},
  year = 2009,
}

@article{CTT100585055,
  author = {Oliver Piskurek and Hidenori Nishihara and Norihiro Okada},
  title = {The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis},
  journal = {GENE},
  year = 2009,
}

@article{CTT100573644,
  author = {Hidenori Nishihara and Shigenori Maruyama and Norihiro Okada},
  title = {Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals},
  journal = {Proceedings of the National Academy of Sciences USA},
  year = 2009,
}

@article{CTT100673545,
  author = {Okada N and Nikaido M and Nishihara H.},
  title = {Phylogenomics and its Future: Devoted to M Hasegawa.},
  journal = {GENE},
  year = 2009,
}

@article{CTT100553460,
  author = {Manami Matsuura and Hidenori Nishihara and Koh Onimaru and Nobuhiro Kokubo and Shigehiro Kuraku and Norihiro Okada and Shigeru Kuratani and Mikiko Tanaka},
  title = {Identification of four Engrailed genes in the Japanese lamprey, Lethenteron japonicum.},
  journal = {Developmental Dynamics},
  year = 2008,
}

@article{CTT100553869,
  author = {Takeshi Sasaki and Hidenori Nishihara and Mika Hirakawa and Koji Fujimura and Mikiko Tanaka and Nobuhiro Kokubo and Chiharu Kimura-Yoshida and Isao Matsuo and Kenta Sumiyama and Naruya Saitou and Tomomi Shimogori and Norihiro Okada},
  title = {Possible involvement of SINEs in mammalian-specific brain formation},
  journal = {Proceedings of the National Academy of Sciences USA},
  year = 2008,
}

@article{CTT100646727,
  author = {Maruo Munemasa and Masato Nikaido and Hidenori Nishihara and Stephen Donnellan and Christopher C. Austin and Norihiro Okada},
  title = {Newly discovered young CORE-SINEs in marsupial genomes},
  journal = {Gene},
  year = 2008,
}

@article{CTT100646729,
  author = {Hidenori Nishihara and Shuichi Kuno and Masato Nikaido and Norihiro Okada},
  title = {MyrSINEs: a novel SINE family in the anteater genomes},
  journal = {Gene},
  year = 2007,
}

@article{CTT100548858,
  author = {Kenji Ichiyanagi and Hidenori Nishihara and David D. Duvernell and Norihiro Okada},
  title = {Acquisition of Endonuclease Specificity during Evolution of L1 Retrotransposon},
  journal = {Molecular Biology and Evolution},
  year = 2007,
}

@article{CTT100548860,
  author = {Hidenori Nishihara and Norihiro Okada and Masami Hasegawa},
  title = {Rooting the eutherian tree: the power and pitfalls of phylogenomics},
  journal = {Genome Biology},
  year = 2007,
}

@article{CTT100548857,
  author = {Vitaliy Matveev and Hidenori Nishihara and Norihiro Okada},
  title = {Novel SINE Families from Salmons Validate Parahucho (Salmonidae) as a Distinct Genus and Give Evidence that SINEs Can Incorporate LINE-related 3'-Tails of Other SINEs},
  journal = {Molecular Biology and Evolution},
  year = 2007,
}

@article{CTT100646731,
  author = {T Yonezawa and Masato Nikaido and M Kohno and Y Fukumoto and NORIHIRO OKADA and M Hasegawa},
  title = {Molecular phylogenetic study on the origin and evolution of Mustelidae.},
  journal = {Gene.},
  year = 2007,
}

@article{CTT100646732,
  author = {Masato Nikaido and oliver piskurek and NORIHIRO OKADA},
  title = {Toothed whale monophyly reassessed by SINE insertion analysis: The absence of lineage sorting effects suggests a small population of a common ancestral species.},
  journal = {Mol. Phylogenet. Evol.},
  year = 2007,
}

@article{CTT100646733,
  author = {Jun-ichi Onami and Masato Nikaido and H Mannen and NORIHIRO OKADA},
  title = {Genomic expansion of the Bov-A2 retroposon relating to phylogeny and breed management.},
  journal = {Mamm Genome.},
  year = 2007,
}

@article{CTT100525728,
  author = {Terai Y and Seehausen O and Sasaki T and Takahashi K and Mizoiri S and Sugawara T and Sato T and Watanabe M and Konijnendijk N and Mrosso HD and Tachida H and Imai H and Shichida Y and Okada N.},
  title = {Divergent Selection on Opsins Drives Incipient Speciation in Lake Victoria Cichlids.},
  journal = {PLoS Biol.},
  year = 2006,
}

@article{CTT100559998,
  author = {Yohey Terai and Ole Seehausen and Takeshi Sasaki and KAZUHIKO TAKAHASI and Shinji MIZOIRI and Tohru Sugawara and Tetsu Sato and Masakatsu Watanabe and Konijnendijk Nellie and Hillary Mrosso and Hidenori Tachida and Hiroo Imai and Yoshinori Shichida and NORIHIRO OKADA},
  title = {Divergent Selection on Opsins Drives Incipient Speciation in Lake Victoria Cichlids},
  journal = {PLoS Biology},
  year = 2006,
}

@article{CTT100525726,
  author = {Ichiyanagi K and Okada N.},
  title = {Genomic alterations upon integration of zebrafish L1 elements revealed by the TANT method.},
  journal = {Gene.},
  year = 2006,
}

@article{CTT100525727,
  author = {Iwashita M and Watanabe M and Ishii M and Chen T and Johnson SL and Kurachi Y and Okada N and Kondo S.},
  title = {Pigment Pattern in jaguar/obelix Zebrafish Is Caused by a Kir7.1 Mutation: Implications for the Regulation of Melanosome Movement.},
  journal = {PLoS Genet.},
  year = 2006,
}

@article{CTT100525724,
  author = {Nomura Y and Kajikawa M and Baba S and Nakazato S and Imai T and Sakamoto T and Okada N and Kawai G.},
  title = {Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2.},
  journal = {Nucleic Acids Res.},
  year = 2006,
}

@article{CTT100548855,
  author = {Hidenori Nishihara and Arian F. A. Smit and Norihiro Okada},
  title = {Functional noncoding sequences derived from SINEs in the mammalian genome},
  journal = {Genome Research},
  year = 2006,
}

@article{CTT100548856,
  author = {Hidenori Nishihara and Masami Hasegawa and Norihiro Okada},
  title = {Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions},
  journal = {Proceedings of the National Academy of Sciences USA},
  year = 2006,
}

@article{CTT100525721,
  author = {Piskurek O and Okada N.},
  title = {Simple and complex SINEs: A brief critical comment.},
  journal = {Gene},
  year = 2006,
}

@article{CTT100525713,
  author = {Sugano T and Kajikawa M and Okada N.},
  title = {Isolation and characterization of retrotransposition-competent LINEs from zebrafish.},
  journal = {Gene},
  year = 2006,
}

@article{CTT100525712,
  author = {Kawagoe-Takaki H and Nameki N and Kajikawa M and Okada N.},
  title = {Probing the secondary structure of salmon SmaI SINE RNA.},
  journal = {Gene},
  year = 2006,
}

@article{CTT100525717,
  author = {Piskurek O and Austin CC and Okada N.},
  title = {Sauria SINEs: Novel Short Interspersed Retroposable Elements That Are Widespread in Reptile Genomes.},
  journal = {J Mol Evol.},
  year = 2006,
}

@article{CTT100525718,
  author = {Nishihara H and Smit AF and Okada N.},
  title = {Functional noncoding sequences derived from SINEs in the mammalian genome.},
  journal = {Genome Res.},
  year = 2006,
}

@article{CTT100525715,
  author = {Kobayashi N and Watanabe M and Kijimoto T and Fujimura K and Nakazawa M and Ikeo K and Kohara Y and Gojobori T and Okada N.},
  title = {magp4 gene may contribute to the diversification of cichlid morphs and their speciation.},
  journal = {Gene},
  year = 2006,
}

@article{CTT100525719,
  author = {Nishihara H and Hasegawa M and Okada N.},
  title = {Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions.},
  journal = {Proc Natl Acad Sci USA.},
  year = 2006,
}

@article{CTT100646743,
  author = {Hidenori Nishihara and Yoko Satta and Masato Nikaido and J. G. M. Thewissen and Michael J. Stanhope and Norihiro Okada},
  title = {A retroposon analysis of Afrotherian phylogeny},
  journal = {Molecular Biology and Evolution},
  year = 2005,
}

@article{CTT100505507,
  author = {Takahiro Segawa and Koji Miyamoto and Kazunari Ushida and Kiyokazu Agata and Norihiro Okada and Shiro Kohshima},
  title = {Seasonal Change in Bacterial Flora and Biomass in Mountain Snow from the Tateyama Mountains, Japan, Analyzed by 16S rRNA Gene Sequencing and Real-Time PCR.},
  journal = {Applied and Environmental Microbiology},
  year = 2005,
}

@article{CTT100540664,
  author = {Kijimoto, T. and Watanabe, M. and Fujimura, K. and Nakazawa, M. and Murakami, Y. and Kuratani, S. and Kohara, Y. and Gojobori, T. and Okada, N.},
  title = {cimp1, A Novel Astacin Family Metalloproteinase Gene from East African Cichlids, Is Differentially Expressed Between Species During Growth.},
  journal = {Mol Biol Evol.},
  year = 2005,
}

@article{CTT100393544,
  author = {Sugawara, T. and Terai, Y. and Imai, H. and Turner, G. F. and Koblmuller, S. and Sturmbauer, C. and Shichida, Y. and Okada, N.},
  title = {Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi.},
  journal = {Proc. Natl. Acad. Sci. USA},
  year = 2005,
}

@article{CTT100393538,
  author = {Kajikawa, M. and Ichiyanagi, K. and Tanaka, N. and Okada, N.},
  title = {Isolation and characterization of active LINE and SINEs from the eel.},
  journal = {Mol. Biol. Evol.},
  year = 2005,
}

@article{CTT100393549,
  author = {Ohshima, K. and Okada, N.},
  title = {SINEs and LINEs: symbionts of eukaryotic genomes with a common tail.},
  journal = {Cytogenet Genome Res.},
  year = 2005,
}

@article{CTT100491109,
  author = {Terai Y. and Takezaki N. and Mayer W.E. and Tichy H. and Takahata N. and Klein J. and Okada N.},
  title = {Plylogenetic relationships among East African haplochromine fishes as revealed by short interspersed elements (SINEs).},
  journal = {J. Mol. Evol.},
  year = 2004,
}

@article{CTT100505505,
  author = {Masakatsu Watanabe and Naoki Kobayashi and Tadasu Shin-i and Yoshio Tateno and Yuji Kohara and Norihiro Okada.},
  title = {Extensive analysis of ORF sequences from two different cichlid species in Lake Victoria provides molecular evidence for a recent radiation event of the Victoria species flock.},
  journal = {GENE},
  year = 2004,
}

@article{CTT100505506,
  author = {Ayano Sugie and Yohey Terai and Ryoko Ota and Norihiro Okada},
  title = {The evolution of genes for pigmentation in African cichlid fishes.},
  journal = {GENE},
  year = 2004,
}

@article{CTT100499038,
  author = {Seiki Baba and Masaki Kajikawa and Norihiro Okada and Gota Kawai },
  title = {Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2.},
  journal = {RNA},
  year = 2004,
}

@article{CTT100499039,
  author = {Andrew M. Shedlock and Kazuhiko Takahashi and Norihiro Okada },
  title = {SINEs of speciation: tracking lineages with retroposons.},
  journal = {Trends in Ecology & Evolution},
  year = 2004,
}

@article{CTT100673544,
  author = {Okada N and Shedlock AM and Nikaido M},
  title = {Retroposon Mapping in Molecular Systematics in: P. Capy, ed. Mobile genetic elements: Protocols and Genomic applications.},
  journal = {Humana Press, U.S.A.},
  year = 2004,
}

@article{CTT100560000,
  author = {Yohey Terai and Naoko Morikawa and Koichi Kawakami and Norihiro Okada},
  title = {The complexity of alternative splicing of hagoromomRNAs is increased in an explosively speciated lineage in East African cichlids},
  journal = {Proc. Natl. Acad. Sci. USA},
  year = 2003,
}

@article{CTT100646748,
  author = {Nikaido Masato and Nishihara Hidenori and Fukumoto Yukio and Okada Norihiro},
  title = {Ancient SINEs from African endemic mammals},
  journal = {Molecular Biology and Evolution},
  year = 2003,
}

@article{CTT100491107,
  author = {Terai Y. and Morikawa N. and Kawakami K. and Okada N.},
  title = {The complexity of alternative splicing of hagoromo mRNA is increased in an explosively speciated lineage in East African cichlids.},
  journal = {Proc. Natl. Acad. Sci. USA  in press},
  year = 2003,
}

@article{CTT100499036,
  author = {Watanabe M and Kobayashi N and Fujiyama A and Okada N.  },
  title = {Construction of a BAC library for Haplochromis chilotes, a cichlid fish from Lake Victoria.},
  journal = {Genes. Genet. Syst.},
  year = 2003,
}

@article{CTT100499031,
  author = {Ohshima K and Hattori M and Yada T and Gojobori T and Sakaki Y and Okada N. },
  title = {Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates.},
  journal = {Genome Biol.},
  year = 2003,
}

@article{CTT100491111,
  author = {Terai Y. and Takahashi K. and Nishida M. and Sato T. and Okada N.},
  title = {Using SINEs to Probe Ancient Explosive Speciation: Hidden Radiation of African Cichlids?},
  journal = {Mol. Biol. Evol.},
  year = 2003,
}

@article{CTT100491108,
  author = {2. Ishitani R. and Nureki O. and Nameki N. and Okada N. and Nishimura S. and Yokoyama S.},
  title = {Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme.},
  journal = {Cell},
  year = 2003,
}

@article{CTT100559999,
  author = {Yohey Terai and Werner E. Mayer and Jan Klein and Herbert Tichy and Norihiro Okada},
  title = {The effect of selection on a long wavelength-sensitive (LWS) opsin gene of Lake Victoria cichlid fishes},
  journal = {Proc. Natl. Acad. Sci. USA},
  year = 2002,
}

@article{CTT100462504,
  author = {Nishihara, H. and Terai, Y. and Okada, N.},
  title = {Characterization of novel Alu-related and tRNA-related SINEs from the tree shrew reveals conservation of the secondary structure of Alu sequences.},
  journal = {Mol.Biol.Evol. },
  year = 2002,
}

@article{CTT100462505,
  author = {Terai, Y. and Morikawa, N. and Nishida, M. and Okada, N.},
  title = {Rapid evolution of pro-domain of bone morphologenetic protein 4 (BMP4) in explosively speciated lineage in East African cichlid fishes.},
  journal = {Mol.Biol.Evol.},
  year = 2002,
}

@article{CTT100462510,
  author = {Terai, Y. and Morikawa, N. and Kawakami, K. and Okada, N.},
  title = {Rapid evolution of the surface amino acids in the WD-repeat domain encoded by the hagoromo gene in an explosively speciated lineage of East African fishes.},
  journal = {Mol.Biol.Evol. },
  year = 2002,
}

@article{CTT100467288,
  author = {Sugawara, T. and Terai, Y. and Okada, N.},
  title = {Natural selection operating on rhodopsin gene during the adaptive radiation of East African Great Lakes cichlid fishes.},
  journal = {Mol.Biol.Evol.  },
  year = 2002,
}

@article{CTT100467287,
  author = {Ishitani, R. and Nureki, O. and Fukai, S. and Kijimoto, T. and Nameki, N. and Watanabe, M. and Sekine, M. and Okada, N. and Nishimura, S. and Yokoyama, S.},
  title = {Structural basis for the base-exchange reaction by archaeosine tRNA-guanine transglycosylase.},
  journal = {J. Mol. Biol. },
  year = 2002,
}

@article{CTT100462501,
  author = {Ogiwara, I. and Miya, M. and Ohshima, K. and Okada, N},
  title = {V-SINEs: A new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit.},
  journal = {Genome Research },
  year = 2002,
}

@article{CTT100462502,
  author = {Takahashi, K. and Okada, N.},
  title = {Mosaic structure and retrotranspositional dynamics during evolution of subfamilies of short interspersed elements in African cichlids.},
  journal = {Mol.Biol.Evol. },
  year = 2002,
}

@article{CTT100538317,
  author = {Kajikawa, M. and Okada, N.},
  title = {LINEs mobilizes SINEs in the eel through a shared 3' sequence.},
  journal = {Cell},
  year = 2002,
}

@article{CTT100459729,
  author = {Watanabe, M. and Nameki, N. and Matsuo-Takasaki, M. and Nishimura, S. and Okada, N.},
  title = {tRNA recognition of tRNA-guanine transglycosylase from a hyperthermophilic archaeon, Pyrococcus horikoshii.},
  journal = {J.Biol.Chem.},
  year = 2001,
}

@article{CTT100459730,
  author = {Takahashi, K. and Terai, Y. and Nishida, M. and Okada, N.},
  title = {Phylogenetic relationships and ancient incomplete lineage soerting among cichlid fishes in Lake Tanganyika as revealed by analysis of the insertion of retroposons.},
  journal = {Mol.Biol.Evol.},
  year = 2001,
}

@article{CTT100467286,
  author = {Ishitani, R. and Nureki, O. and Kijimoto, T. and Watanabe, M. and Kondo, H. and Nameki, N. and Okada, N. and Nishimura, S. and Yokoyama, S.},
  title = {Crystallization and preliminary X-ray analysis of the archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii.},
  journal = {Acta Crystallogr},
  year = 2001,
}

@article{CTT100462508,
  author = {Takahashi, K. and Nishida, M. and Yuma, M. and Okada, N.},
  title = {Retroposition of the AFC family of SINEs (short interspersed repetitive elements) before and during the adaptive radiation of cichlid fishes in Lake Malawi and their usage for phylogenetic inference.},
  journal = {J.Mol.Evol. },
  year = 2001,
}

@article{CTT100437688,
  author = {Shedlock, A.M. and Okada, N.},
  title = {SINE insertion: powerful tools for molecular systematics},
  journal = {BioEssays},
  year = 2000,
}

@article{CTT100462500,
  author = {Shedlock, A.M. and Milinkovitch, M.C. and Okada, N.},
  title = {SINE evolution, missing data, and the origin of whales.},
  journal = {Syst. Biol.},
  year = 2000,
}

@article{CTT100437686,
  author = {Ogiwara, I. and Miya, M. and Ohshima, K. and Okada, N.},
  title = {Retropositional parasitism of SINEs on LINEs: Identification of SINEs and LINEs in Elasmobranchs.},
  journal = {Mol. Biol. Evol.},
  year = 1999,
}

@article{CTT100407341,
  author = {Takahashi, K. and Terai, Y. and Nishida, M. and Okada, N.},
  title = {A Novel Family of Short Interspersed repetitive Elements(SINEs)from Cichlids : The Patterns of Insertion of SINEs at Orthologous loci support the proposed Monophyly of four major groups of Cichlid fishes in lake Tanganyika.},
  journal = {Mol. Biol. Evol.},
  year = 1998,
}

@article{CTT100407343,
  author = {Terai, Y. and Takahashi, K. and Okada, N.},
  title = {SINE cousins : The 3'-end tails of the two oldest and distantly related families of SINEs are descended from the 3'ends of LINEs with the same genealogical origin.},
  journal = {Mol. Biol. Evol.},
  year = 1998,
}

@article{CTT100407342,
  author = {Hamada, M. and Takasaki, N. and Reist, J.D. and Decicco, A.L. and Goto, A. and Okada, N.},
  title = {Detection of the on-going sorting of ancestrally polymorphic SINEs towards fixation or loss in populations of two species of charr during speciation.},
  journal = {Genetics},
  year = 1998,
}

@article{CTT100407338,
  author = {Takasaki, N. and Yamaki, T. and Hamada, M. and Park, L. and Okada, N.},
  title = {The salmon SmaI Family of Short Interspersed Repetitive Elements (SINEs) : Interspecific and Intraspecific Variation of the Insertion of SINEs in the Genomes of Chum and Pink Salmon.},
  journal = {Genetics},
  year = 1997,
}

@article{CTT100407337,
  author = {Shimamura, M. and Yasue, H. and Ohshima, K. and Abe, H. and Kato, H. and Kishiro, T. and Goto, M. and Munechika, I. and Okada, N.},
  title = {Molecular evidence from retroposons that whales form a clade within even-toed ungulates},
  journal = {Nature},
  year = 1997,
}

@article{CTT100407340,
  author = {Okada, N. and Hamada, M. and Ogiwara, I. and Ohshima, K.},
  title = {SINEs and LINEs share common3' sequences : a review.},
  journal = {GENE},
  year = 1997,
}

@article{CTT100407339,
  author = {Hamada, M. and Kido, Y. and Himberg, M. and Hasegawa, M. and Okada, N.},
  title = {A Newly Isolated Family of Short Interspersed Repetitive Elements(SINEs) in Coregonid Fishes(Whitefish) With Sequences That Are Almost Identical To Those of the SmaI Family of Repeats. Possible Evidence for the Horizontal Transfer of SINEs},
  journal = {Genetics},
  year = 1997,
}

@article{CTT100407336,
  author = {Takasaki, N. and Park, L. and Kaeriyama, M. and Gharrett, A. J. and Okada, N.},
  title = {Characterization of Species-Specifically amplified SINEs in Three Salmonid Species-Chum Salmon,Pink Salmon,and Kokaree:the Lacal enviroment of the Genome May be Important for the Generation of a Dominant Sourcl Gene at a Newly Rtroposed Locus},
  journal = {Journal of Molecular Evolution},
  year = 1996,
}

@article{CTT100407334,
  author = {Murata, S. and Takasaki, N. and Saitoh, M. and Tachida, H. and Okada, N.},
  title = {Details of Retropositional Gerome dynamics that a Retionale for a Gereric Division :the Distinct Branching of All the Pacific Salmon and Trout(Oncorhynchus) From the Atlantic Salmon and Trout(salmo)},
  journal = {Genetics},
  year = 1996,
}

@article{CTT100407335,
  author = {Kido, Y. and Saitoh, M. and Murata, S. and Okada, N.},
  title = {Evolution of Active Sequences of the HpaI Short Interspersed Elements},
  journal = {Journal of Molecular Evolution},
  year = 1995,
}

@article{CTT100407332,
  author = {Ohshima, K. and Okada, N.},
  title = {Generality of the tRNA origin of short interspersed repetitive elements (SINEs) ; Characterization of three different tRNA-derived retroposons in the octopus.},
  journal = {J. Mol. Biol.},
  year = 1994,
}

@article{CTT100407331,
  author = {Yokobori, S. and Hasegawa, M. and Ueda, T. and Okada, N. and Nishikawa, K. and Watanabe, K.},
  title = {Relationship among Coelacanths, Lungfishes, and Tetrapods ; A phylogenetic analysis based on mitochondrial cytochrome oxidase I gene sequence. (共著)},
  journal = {J. Mol Evol.},
  year = 1994,
}

@article{CTT100407330,
  author = {Takasaki, N. and Murata, S. and Saitoh, M. and Kobayashi, T. and ParkL. and Okada, N.},
  title = {Species-specific amplification of tRNA-derived SINEs via retroposition ; a process of parasitization of entire genomes during the evolution of salmonids. (共著)},
  journal = {Proc Nati. Acad. Sci, U. S. A},
  year = 1994,
}

@article{CTT100407328,
  author = {Sakagami, M. and Ohshima, K. and Mukoyama, H. and Yasue, H. and Okada, N.},
  title = {A novel tRNA species as an origin of short interspersed repetitive elements (SINEs) ; Equine SINEs may have originated from tRNA ┣D1Ser┫D1(共著)},
  journal = {J. Mol. Biol.},
  year = 1994,
}

@article{CTT100407329,
  author = {Kido, Y. and Himberg, M. and Takasaki, N. and Okada, N.},
  title = {Amplification of distinct subfamilies of short interspersed elements (SINE) during evolution of the Salmonidae. (共著)},
  journal = {J. Mol. Biol.},
  year = 1994,
}

@article{CTT100407333,
  author = {Nakanishi, S. and Ueda, T. and Hori, H. and Yamazaki, N. and Okada, N. and Watanabe, K.},
  title = {A UGU Sequence in the anticodon loop is a minimum requirement for recognition by Escherichia coli tRNA-guanine transglycosylase.},
  journal = {J. Biol. Chem.},
  year = 1994,
}

@article{CTT100407327,
  author = {Ohshima, K. and Koishi, R. and Matsuo, M. and Okada, N.},
  title = {Several SINEs in distant species may have originated from a common ancestral retrovirus : characterization of a squid SINE and a possible mechanism for generation of tRNA-derived retroposons},
  journal = {Proc Natl Acad Sci USA},
  year = 1993,
}

@article{CTT100407326,
  author = {Yoshioka, Y. and Matsumoto, S. and Kojima, S. and Ohshima, K. and Okada, N. and Machida Y.},
  title = {Molecular characterization of a short interspersed repetitive element(SINE)from tobacco thatexhibits sequence homology to specific tRNAs},
  journal = {Proc Natl Acad Sci USA},
  year = 1993,
}

@article{CTT100407325,
  author = {Murata, S. and Takasaki, N. and Saitoh, M. and Okada, N.},
  title = {Determination of the phylogenetic relationships among Pacific salmonide using short interspersed elments(SINEs)as temporal landmarks of evolution},
  journal = {Proc Nati Acad Sci USA},
  year = 1993,
}

@article{CTT100407324,
  author = {Kojima, S. and Hashimoto, T. and Hasegawa, M. and Murata, S. and Ohta, S. and Seki, H. and Okada, N.},
  title = {Close phylogenetic relationship between Vestimentifera(tube worms)and Annelida revealed by the amino acid sequence of elongation factor-1 α},
  journal = {J. Mol. Evol},
  year = 1993,
}

@article{CTT100407323,
  author = {Okada, N. and Ohshima, K.},
  title = {A model for the mechanism of initial generation of short interspered elements (SINEs)},
  journal = {J. Mol. Evol},
  year = 1993,
}

@article{CTT100396948,
  author = {Nagahashi, S. and Endoh, H. and Suzuki, Y. and Okada, N.},
  title = {Characterization of a tandemly repeated DNA sequence family originally derived by retroposition of tRNA┣D1Glu┫D1 in the newt.},
  journal = {J. Mol. Biol.},
  year = 1991,
}

@article{CTT100396946,
  author = {Kido, Y. and Himberg, M. and Takasaki, N. and Okada, N.},
  title = {Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution.},
  journal = {Proc. Natl. Acid. Sci. USA},
  year = 1991,
}

@article{CTT100396951,
  author = {Koishi, R. and Okada, N.},
  title = {Distribution of the salmonid HpaI family in the saImonid species demonstrated by in vitro run-off transcription assay of total genomic DNA : A procedure to estimate repetitive frequency and sequence divergence of a certain repetitive family with a few known sequences.},
  journal = {J. Mol. Evol.},
  year = 1991,
}

@article{CTT100396950,
  author = {NORIHIRO OKADA},
  title = {SINEs : Short interspersed elements of the eukaryotic genome.},
  journal = {Trends in Ecology & Evolution},
  year = 1991,
}

@article{CTT100396949,
  author = {NORIHIRO OKADA},
  title = {SINEs.},
  journal = {Current Opinion in Genetics & Development},
  year = 1991,
}

@article{CTT100407321,
  author = {Endoh, H. and Hagahashi, S. and Okada, N.},
  title = {Highly repetitive and transcribable sequence in the tortoise genome is probably a retroposon.},
  journal = {Eur. J. Biochem},
  year = 1990,
}

@article{CTT100407320,
  author = {NORIHIRO OKADA},
  title = {Transfer RNA-like structure of the human Alu family : Implications of its generation mechanism and possible functions.},
  journal = {J. Mol. Evol.},
  year = 1990,
}

@article{CTT100407322,
  author = {NORIHIRO OKADA},
  title = {Tetrahymena pyriformis DNA fragment with a gene cluster for 3 putative serine tRNAs and an asparagine tRNA.},
  journal = {Nucleic Acids Res.},
  year = 1989,
}

@article{CTT100396947,
  author = {Matsumoto, K. and Takii, T. and Okada, N.},
  title = {Characterization of a new termination signal for RNA polymerase III responsible for generation of a discrete-sized RNA transcribed from salmon genomic total DNA in a HeLa cell extract.},
  journal = {J. Biol. Chem.},
  year = 1989,
}

@inproceedings{CTT100810865,
  author = {樋口拓人 and 西原秀典 and 梶谷嶺 and 豊田敦 and 伊藤武彦 and 岡田典弘 and 二階堂雅人},
  title = {東アフリカ産淡水魚シクリッドゲノムにおける祖先多型遺伝子座の起源},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100810872,
  author = {樋口拓人 and 西原秀典 and 梶谷嶺 and 豊田敦 and 伊藤武彦 and 岡田典弘 and 二階堂雅人},
  title = {ゲノムワイドなSINE 挿入解析から東アフリカ産シクリッドにおける祖先多型の持続性を解明する},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100734331,
  author = {Masato Nikaido and Hikoyuu Suzuki and Satta and Semvua Mzighani and Christian Sturmbauer and Kimiko Hagino-Yamagishi and NORIHIRO OKADA},
  title = {Multiple episodic evolution events in V1R receptor genes of East-African cichlids},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100815873,
  author = {Masato Nikaido and NORIHIRO OKADA},
  title = {Genetic mechanism underlying the parallel evolution of lip thickness in east African cichlids},
  booktitle = {GENES & GENETIC SYSTEMS},
  year = 2015,
}

@inproceedings{CTT100734322,
  author = {二階堂雅人 and 岡田典弘},
  title = {シクリッドの唇肥大化に関わる平行進化メカニズム},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100734320,
  author = {二階堂雅人 and 岡田典弘},
  title = {収斂進化の分子機構：シクリッドを題材にして},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100677690,
  author = {小林直樹 and 二階堂雅人 and 近藤梓 and 鈴木彦有 and 菊池潔 and 岡田典弘},
  title = {シクリッドの唇肥大化メカニズム},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100677688,
  author = {Nikaido M and Okada N.},
  title = {Evolution of the chemo-receptor genes in coelacanth.},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100815868,
  author = {Masato Nikaido and Kondo, Azusa and Kudo, Yu and Hikoyuu Suzuki and NORIHIRO OKADA},
  title = {Genetic mechanism underlying adaptive radiation and parallel evolution in cichlids},
  booktitle = {GENES & GENETIC SYSTEMS},
  year = 2013,
}

@inproceedings{CTT100673858,
  author = {二階堂 雅人 and 近藤 梓 and 工藤 優 and 鈴木 彦有 and 岡田 典弘},
  title = {シクリッドの適応放散・平行進化に関わる遺伝的基盤とそのメカニズム},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100673855,
  author = {近藤梓 and 二階堂雅人 and 菊池潔 and 岡田典弘},
  title = {シクリッドの平行進化に関わる遺伝領域の探索},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100673854,
  author = {二階堂雅人 and 颯田葉子 and 相原光人 and 菊池潔 and 山岸公子 and 岡田典弘},
  title = {シクリッドV1R遺伝子の多様化と性決定領域との関連性},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100673856,
  author = {鈴木彦有 and 二階堂雅人 and 柴田朋子 and 野澤昌文 and 重信秀治 and 西山智明 and 岡田典弘},
  title = {比較ゲノム解析で迫るアフリカ三大湖産シクリッドの進化メカニズム},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100673853,
  author = {Nikaido M and Satta Y and Aibara M and Hagino-Yamagishi K and Okada N.},
  title = {Multiple episodic evolution events in V1R receptor genes of East-African cichlids},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100673852,
  author = {鈴木彦有 and 二階堂雅人 and 山岸公子 and 岡田典弘},
  title = {真骨魚類特異的ゲノム重複(3R)によるOlfactory Marker Protein遺伝子の重複と機能分化},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100673851,
  author = {二階堂雅人 and 颯田葉子 and 相原光人 and 山岸公子 and 岡田典弘},
  title = {シクリッドV1R受容体遺伝子群に繰り返し働いた正の選択},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100673850,
  author = {Nikaido M and Sasaki T and Emerson JJ and Aibara M and Mzighani SI and Budeba YL and Ngatunga BP and Iwata M and Abe Y and Li WH and Okada N.},
  title = {A genetically distinct coelacanth population is discovered off the northern Tanzanian coast.},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100810840,
  author = {Nikaido M and Hirata T and Satta Y and Saito Y and Aibara M and Mizoiri S and Mzighani SI and Hagino-Yamagishi K and Okada N.},
  title = {Positive selection and long standing polymorphism on V1R2 in east African cichlids.},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100673849,
  author = {Nikaido M and Sasaki T and Emerson JJ and Aibara M and Mzighani SI and Budeba YL and Ngatunga BP and Iwata M and Abe Y and Li WH and Okada N.},
  title = {A genetically distinct coelacanth population is discovered off the northern Tanzanian coast.},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100790207,
  author = {村田 有美枝 and 田村 純香 and 中谷 友紀 and 曾田 祐輔 and Koji Fujimura and Yasunori Murakami and Masataka Okabe and 岡田 典弘 and 田中 幹子},
  title = {Allometric growth of trunk-tail leads to the rostral shift of the pelvic fin in teleost fishes},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100612160,
  author = {和田亮一 and 坂井三郎 and 二階堂雅人 and 相原光人 and 大河内直彦 and 岡田典弘 and 山田桂太 and 吉田尚弘},
  title = {耳石の同位体分析によるシーラカンスの生息水深推定},
  booktitle = {2010年度日本地球化学会第57回年会講演要旨集},
  year = 2010,
}

@inproceedings{CTT100673815,
  author = {二階堂雅人 and 平田直 and 斉藤曜平 and 相原光人 and 溝入真治 and Semvua I. Mzighani and 山岸公子 and 岡田典弘},
  title = {シクリッド集団中における長期間の多型維持とその後の分断選択},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100673816,
  author = {大田 朋槻 and 二階堂 雅人 and 山岸 公子 and 岡田 典弘},
  title = {タンガニーカ湖産シクリッド・トロフェイニ族のV1R1遺伝子における正の淘汰},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100673817,
  author = {鈴木彦有 and 二階堂雅人 and 山岸公子 and 岡田典弘},
  title = {真骨魚類特異的ゲノム重複に伴う真骨魚類OMP遺伝子の重複と機能分化},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100673814,
  author = {Nikaido M and Okada N.},
  title = {Nose and Lip: Recent Progress in my Cichlid Research.},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100673811,
  author = {平田直 and 二階堂雅人 and 山岸公子 and 岡田典弘},
  title = {近縁種シクリッド間におけるV1R2嗅覚受容体遺伝子の多型状態の解析},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100790220,
  author = {村田 有美枝 and 田村 純香 and 中谷 友紀 and 曾田 祐輔 and Koji Fujimura and Yasunori Murakami and Masataka Okabe and 岡田 典弘 and 田中 幹子},
  title = {Allometric growth of trunk-tail leads to the rostral shift of the pelvic fin in teleost fishes},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100673813,
  author = {二階堂雅人 and 豊田敦 and 山岸公子 and 藤山秋佐夫 and 岡田典弘},
  title = {シクリッドV2R型嗅覚受容遺伝子群の進化：lineage specific expansionの進化的役割は？},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100790222,
  author = {Yumie Murata and Mika Tamura and Yuki Nakatani and Yusuke Aita and Koji Fujimura and Yasunori Murakami and Masataka Okabe and Norihiro Okada and Mikiko Tanaka},
  title = {Allometric growth of trunk-tail leads to the rostral shift of the pelvic fin in teleost fishes},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100673797,
  author = {大原 海 and 二階堂 雅人 and 伊藤 敦子 and 茂木 一孝 and 岡村 裕昭 and 岡田 典弘 and 森 裕司 and 山岸 公子},
  title = {鯨偶蹄類1型鋤鼻受容体の進化},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100673798,
  author = {Mzighani SI and Nikaido M and Takeda M and Aibara M and Mizoiri S and Tachida H and Okada N.},
  title = {Population genetics of Lake Victoria slender body HaplochromineCichlids.},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100673794,
  author = {二階堂雅人 and 平田直 and 相原光人 and 溝入真治 and 山岸公子 and 岡田典弘},
  title = {シクリッド嗅覚受容体V1R2遺伝子において観察された大規模な種間多型},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100555223,
  author = {KOJI FUJIMURA and NORIHIRO OKADA},
  title = {Bone development in the jaw of Nile tilapia Oreochromis niloticus (Pisces: Cichlidae)},
  booktitle = {Develop. Growth Differ},
  year = 2008,
}

@inproceedings{CTT100555222,
  author = {KOJI FUJIMURA and Yohey Terai and N Ishiguro and M Miya and M Nishida and NORIHIRO OKADA},
  title = {Heterotypy in the N-terminal region of Growth/Differentiation Factor 5 (GDF5) mature protein during teleost evolution},
  booktitle = {Mol Biol Evol},
  year = 2008,
}

@inproceedings{CTT100673806,
  author = {Hiraoka K and Nikaido M and Okada N.},
  title = {volution of Dopamine D2-like Receptors in Teleost species.},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100673808,
  author = {Suzuki H and Nikaido M and Okada N.},
  title = {Two Olfactory Marker Protein genes in Teleost Fish.},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100673799,
  author = {Hiraoka K and Nikaido M and Okada N.},
  title = {Evolution of Dopamine D2-like Receptors in Teleost species.},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100810847,
  author = {Sasaki T and Nikaido M and Wada S and Yamada TK and Cao Y and Hasegawa M and Okada N.},
  title = {Molecular phylogenetics and evolutionary history of Balaenoptera omurai inferred from the combined analysis of mitochondrial genome and SINE method.},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100673809,
  author = {Watanabe M and Nikaido M and Tsuda TT and Mindell DP and Murata K and Cao Y and Hasegawa M and Okada N.},
  title = {Phylogenetic analyses of Sphenisciformes based on complete sequences of mtDNA and insertion patterns of Chicken Repeat 1.},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100790237,
  author = {村田有美枝 and 田村美香 and 藤村衡至 and 岡田典弘 and 田中幹子},
  title = {硬骨魚類の腹鰭の位置設定機構の解析},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100673793,
  author = {二階堂雅人 and 岡田典弘},
  title = {ビクトリア湖産シクリッドにおけるV2R型嗅覚受容体の進化},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100555225,
  author = {Oliver Piskurek and NORIHIRO OKADA},
  title = {Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals.},
  booktitle = {Proc Natl Acad Sci U S A.},
  year = 2007,
}

@inproceedings{CTT100673792,
  author = {Nikaido M and Okada N},
  title = {Evolution of V1R-type olfactory receptor genes of cichlid fishes from east Africa},
  booktitle = {},
  year = 2007,
}

@inproceedings{CTT100555245,
  author = {H Honda and Kenji Ichiyanagi and J Suzuki and Takao Ono and Masaki Kajikawa and NORIHIRO OKADA},
  title = {A new system for analyzing LINE retrotransposition in the chicken DT40 cell line widely used for reverse genetics.},
  booktitle = {GENE,},
  year = 2007,
}

@inproceedings{CTT100555241,
  author = {KOJI FUJIMURA and NORIHIRO OKADA},
  title = {Development of the embryo, larva and early juvenile of Nile tilapia Oreochromis niloticus (Pisces: Cichlidae). Developmental staging system},
  booktitle = {Develop. Growth Differ.},
  year = 2007,
}

@inproceedings{CTT100555265,
  author = {Masato Tamura and Masaki Kajikawa and NORIHIRO OKADA},
  title = {Functional splice sites in a zebrafish LINE and their influence on zebrafish gene expression.},
  booktitle = {Gene.},
  year = 2007,
}

@inproceedings{CTT100555240,
  author = {B Xue and AP Rooney and Masaki Kajikawa and WL Roelofs and NORIHIRO OKADA},
  title = {Novel sex pheromone desaturases in the genomes of corn borers generated through gene duplication and retroposon fusion.},
  booktitle = {Proc Natl Acad Sci U S A.},
  year = 2007,
}

@inproceedings{CTT100555254,
  author = {Takeshi Sasaki and T Sato and S Miura and PO Bwathondi and BP Ngatunga and NORIHIRO OKADA},
  title = {Mitogenomic analysis for coelacanths (Latimeria chalumnae) caught in Tanzania.},
  booktitle = {Gene.},
  year = 2007,
}

@inproceedings{CTT100555256,
  author = {一柳健司 and R Nakajima and 梶川正樹 and 岡田典弘},
  title = {Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts.},
  booktitle = {Genome Res.},
  year = 2007,
}

@inproceedings{CTT100673791,
  author = {二階堂雅人 and 岡田典弘},
  title = {ビクトリア湖産シクリッドにおける嗅覚遺伝子群の多様化と種の多様化},
  booktitle = {},
  year = 2006,
}

@inproceedings{CTT100555263,
  author = {Takeshi Sasaki and Y Yasukawa and K Takahashi and S Miura and AM Shedlock and NORIHIRO OKADA},
  title = {Extensive morphological convergence and rapid radiation in the evolutionary history of the family Geoemydidae (old world pond turtles) revealed by SINE insertion analysis.},
  booktitle = {Syst Biol.},
  year = 2006,
}

@inproceedings{CTT100673790,
  author = {二階堂雅人 and 岡田典弘},
  title = {東アフリカ産シクリッドにおけるV1R型嗅覚受容体遺伝子の進化},
  booktitle = {},
  year = 2006,
}

@inproceedings{CTT100673789,
  author = {Nikaido M and Okada N},
  title = {Isolation and comparison of V2R type odorant receptor gene cluster of the Lake Victorian cichlids; implication for the mechanism of speciation through olfactory communication.},
  booktitle = {},
  year = 2005,
}

@inproceedings{CTT100673788,
  author = {二階堂雅人 and 岡田典弘},
  title = {嗅覚から探るシクリッドの種分化},
  booktitle = {},
  year = 2005,
}

@inproceedings{CTT100673786,
  author = {Nikaido M and Piskurek O and Karumori T and Okada N.},
  title = {Toothed Whale Monophyly Re-emphasized by SINE Insertions: with Special Reference to the Lineage Sorting Effects and the Possible Ascertainment Biases},
  booktitle = {},
  year = 2005,
}

@inproceedings{CTT100673785,
  author = {Nikaido M and Hasegawa M and Okada N.},
  title = {Molecular developmental analysis on the modification of hairs into spines in mammals},
  booktitle = {},
  year = 2004,
}

@inproceedings{CTT100673784,
  author = {二階堂雅人 and 長谷川政美 and 岡田典弘},
  title = {哺乳類における『体毛の針状化」に関する進化発生学的研究},
  booktitle = {},
  year = 2004,
}

@inproceedings{CTT100673781,
  author = {Nikaido M and Okada N.},
  title = {Molecular developmental analysis on the modification of hairs into spines in mammals},
  booktitle = {},
  year = 2004,
}

@inproceedings{CTT100673782,
  author = {Nikaido M and Goto M and Kanda N and Pastene LA and Okada, N.},
  title = {A new SINE procedure for species identification of baleen whales.},
  booktitle = {},
  year = 2004,
}

@inproceedings{CTT100673783,
  author = {二階堂雅人 and 牧野瞳 and 後藤睦夫 and 上田真久 and Luis A Pastene and 曹纓 and 長谷川政美 and 岡田典弘},
  title = {ＳＩＮＥ法によって明らかとなったヒゲ鯨類の系統関係と過去の急速な種分化},
  booktitle = {},
  year = 2004,
}

@inproceedings{CTT100673780,
  author = {二階堂雅人 and 岡田典弘},
  title = {クジラ：SINE法によって明らかとなったその系統関係},
  booktitle = {},
  year = 2003,
}

@inproceedings{CTT100673779,
  author = {二階堂雅人 and 牧野瞳 and 後藤睦夫 and 上田真久 and Luis A Pastene and 曹纓 and 長谷川政美 and 岡田典弘},
  title = {ＳＩＮＥ法によって明らかとなったヒゲ鯨類の系統関係と過去の急速な種分化},
  booktitle = {},
  year = 2003,
}

@inproceedings{CTT100673778,
  author = {Nikaido M and Hamilton H and Makino H and Goto M and Kanda N and Pastene LA and Fordyce RE and Okada N.},
  title = {Phylogenetic reconstruction and detection of the past extensive radiation event of baleen whales based on SINE insertion analysis},
  booktitle = {},
  year = 2003,
}

@inproceedings{CTT100673677,
  author = {Nikaido M and Hamilton H and Makino H and Goto M and Kanda N and Pastene LA and Kato H and Fordyce RE and Okada N.},
  title = {Phylogenetic Reconstruction and Detection of an Ancient Incomplete Lineage Sorting among Mysticetes (baleen whales) based on SINE Insertion Analysis},
  booktitle = {},
  year = 2002,
}

@inproceedings{CTT100673678,
  author = {二階堂雅人 and 佐々木剛 and 牧野瞳 and 後藤睦夫 and 上田真久 and Pastene LA and 加藤秀弘 and 岡田典弘},
  title = {SINE挿入に基づいた鯨類の種判別法の確立},
  booktitle = {},
  year = 2002,
}

@inproceedings{CTT100673676,
  author = {二階堂雅人 and 佐々木剛 and 牧野瞳 and 後藤睦夫 and 上田真久 and Luis A Pastene and 加藤秀弘 and 岡田典弘},
  title = {SINE法を指標とした髭鯨類の包括的系統解析},
  booktitle = {},
  year = 2002,
}

@inproceedings{CTT100673675,
  author = {Nikaido M and Nishihara H and Fukumoto Y and Okada N.},
  title = {Ancient SINEs from African endemic mammals.},
  booktitle = {},
  year = 2002,
}

@inproceedings{CTT100673674,
  author = {二階堂雅人 and 佐々木剛 and 牧野瞳 and 後藤睦夫 and 上田真久 and Luis A Pastene and 加藤秀弘 and 岡田典弘},
  title = {SINEを指標とした髭鯨類の系統解析および祖先多型の検出},
  booktitle = {},
  year = 2001,
}

@inproceedings{CTT100673673,
  author = {Okada N and Nikaido M.},
  title = {Determination of phylogenetic relationships of whales by using SINE.},
  booktitle = {},
  year = 2001,
}

@inproceedings{CTT100673672,
  author = {二階堂雅人 and 佐々木剛 and 牧野瞳 and 後藤睦夫 and 上田真久 and Luis A Pastene and 加藤秀弘 and 岡田典弘},
  title = {SINEを指標とした髭鯨類の系統解析},
  booktitle = {},
  year = 2001,
}

@inproceedings{CTT100673671,
  author = {二階堂雅人 and 佐々木剛 and 牧野瞳 and 後藤睦夫 and 上田真久 and Luis A Pastene and 加藤秀弘 and 岡田典弘},
  title = {SINEを指標とした髭鯨類の系統解析},
  booktitle = {},
  year = 2001,
}

@inproceedings{CTT100673669,
  author = {Nikaido M and Okada N.},
  title = {Ancient SINEs from Africa. Implications for the afrotherian phylogeny.” on International Marin Mammal Symp.},
  booktitle = {},
  year = 2001,
}

@inproceedings{CTT100673663,
  author = {二階堂雅人 and 河合久仁子 and 原田正史 and 長谷川政美 and 岡田典弘},
  title = {ミトコンドリア全長配列に基づいた哺乳類の系統解析},
  booktitle = {},
  year = 2000,
}

@inproceedings{CTT100673662,
  author = {Nikaido M and Okada N.},
  title = {Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins.},
  booktitle = {},
  year = 2000,
}

@inproceedings{CTT100673661,
  author = {二階堂雅人 and 河合久仁子 and 原田正史 and 長谷川政美 and 岡田典弘},
  title = {ミトコンドリア全長配列に基づいた哺乳類の系統解析},
  booktitle = {},
  year = 2000,
}

@inproceedings{CTT100673658,
  author = {Nikaido M and Kawai K and Harada M and Cao Y and Hasegawa M and Okada N.},
  title = {Higher order relationships among Eutheria, as inferred from the complete mitochondrial sequences with special reference to the order Chiroptera and Insectivora.},
  booktitle = {},
  year = 2000,
}

@inproceedings{CTT100673657,
  author = {Nikaido M and Harada M and Cao Y and Hasegawa M and Okada N.},
  title = {Mammalian phylogeny as inferred from the complete mitochondrial DNA sequences with special reference to the order Chiroptera and Insectivora.},
  booktitle = {},
  year = 2000,
}

@inproceedings{CTT100673655,
  author = {Nikaido M and M Harada and Cao Y and M Hasegawa and Okada N.},
  title = {Monophyletic origin of the order Chiroptera and its phylogenetic position among Mammalia, as inferred from the complete sequence of the mitochondrial DNA of a Japanese megabat, the Ryukyu flying fox (Pteropus dasymallus)},
  booktitle = {},
  year = 2000,
}

@inproceedings{CTT100673652,
  author = {二階堂雅人 and 岡田典弘},
  title = {SINE及びLINEを指標とした鯨、偶蹄目の系統関係の解析},
  booktitle = {},
  year = 1999,
}

@inproceedings{CTT100673651,
  author = {Nikaido M and Rooney AP and Okada N.},
  title = {Phylogenetic relationships among cetartiodactylas based on insertions of short and long interspersed elements: Hippopotamuses are the closest extant relatives of whales.},
  booktitle = {},
  year = 1999,
}

@inproceedings{CTT100673650,
  author = {二階堂雅人 and 岡田典弘},
  title = {鯨の起源について：SINEを指標とした鯨、偶蹄類の系統関係の解析},
  booktitle = {},
  year = 1999,
}

@misc{CTT100570015,
  author = {Hidenori Nishihara and Norihiro Okada},
  title = {Retroposons: Genetic Footprints on the Evolutionary Paths of Life},
  year = 2008,
}

@misc{CTT100595994,
  author = {NORIHIRO OKADA},
  title = {tRNA中に存在する微量塩基成分Ｑの生合成機構},
  year = 1978,
}



@phdthesis{CTT100595994,
  author = {NORIHIRO OKADA},
  title = {tRNA中に存在する微量塩基成分Ｑの生合成機構},
  school = { 東京大学},
  year = 1978,
}