@article{CTT100865846,
  author = {Masatoshi Miyakoshi and Haruna Okayama and Maxence Lejars and Takeshi Kanda and Yuki Tanaka and Kaori Itaya and Miki Okuno and Takehiko Itoh and Noritaka Iwai and Masaaki Wachi},
  title = {Mining RNA-seq data reveals the massive regulon of GcvB small RNA and its physiological significance in maintaining amino acid homeostasis in <i>Escherichia coli</i>},
  journal = {Mol. Microbiol.},
  year = 2022,
}

@article{CTT100863094,
  author = {Rei Kajitani and Hideki Noguchi and Yasuhiro Gotoh and Yoshitoshi Ogura and Dai Yoshimura and Miki Okuno and Atsushi Toyoda and Tomomi Kuwahara and Tetsuya Hayashi and Takehiko Itoh},
  title = {MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features},
  journal = {Nucleic Acids Research},
  year = 2021,
}

@article{CTT100863086,
  author = {Hideaki Yuasa and Rei Kajitani and Yuta Nakamura and Kazuki Takahashi and Miki Okuno and Fumiya Kobayashi and Takahiro Shinoda and Atsushi Toyoda and Yutaka Suzuki and Nalinee Thongtham and Zac Forsman and Omri Bronstein and Davide Seveso and Enrico Montalbetti and Coralie Taquet and Gal Eyal and Nina Yasuda and Takehiko Itoh},
  title = {Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis},
  journal = {DNA Research},
  year = 2021,
}

@article{CTT100863084,
  author = {Issei Nakazato and Miki Okuno and Hiroshi Yamamoto and Yoshiko Tamura and Takehiko Itoh and Toshiharu Shikanai and Hideki Takanashi and Nobuhiro Tsutsumi and Shin-Ichi Arimura},
  title = {Targeted base editing in the plastid genome of Arabidopsis thaliana},
  journal = {Nature plants},
  year = 2021,
}

@article{CTT100852230,
  author = {Miki Okuno and Shuntaro Miyamoto and Takehiko Itoh and Masahide Seki and Yutaka Suzuki and Shusei Mizushima and Asato Kuroiwa},
  title = {A Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica.},
  journal = {Scientific Reports},
  year = 2020,
}

@article{CTT100852234,
  author = {Shin-ichi Arimura and Hiroki Ayabe and Hajime Sugaya and Miki Okuno and Yoshiko Tamura and Yu Tsuruta and Yuta Watari and Shungo Yanase and Takaki Yamauchi and Takehiko Itoh and Atsushi Toyoda and Hideki Takanashi and Nobuhiro Tsutsumi},
  title = {Targeted gene disruption of ATP synthases 6-1 and 6-2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs},
  journal = {The Plant Journal},
  year = 2020,
}

@article{CTT100853275,
  author = {Tomohiko Kazama and Miki Okuno and Yuta Watari and Shungo Yanase and Chie Koizuka and Yu Tsuruta and Hajime Sugaya and Atsushi Toyoda and Takehiko Itoh and Nobuhiro Tsutsumi and Kinya Toriyama and Nobuya Koizuka and Shin-ichi Arimura},
  title = {Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing},
  journal = {Nature Plants},
  year = 2019,
}

@article{CTT100853280,
  author = {Dai Yoshimura and Rei Kajitani and Yasuhiro Gotoh and Katsuyuki Katahira and Miki Okuno and Yoshitoshi Ogura and Tetsuya Hayashi and Takehiko Itoh},
  title = {Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP},
  journal = {Microbial Genomics},
  year = 2019,
}

@article{CTT100853293,
  author = {Rei Kajitani and Dai Yoshimura and Miki Okuno and Yohei Minakuchi and Hiroshi Kagoshima and Asao Fujiyama and Kaoru Kubokawa and Yuji Kohara and Atsushi Toyoda and Takehiko Itoh},
  title = {Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions},
  journal = {Nature Communications},
  year = 2019,
}

@article{CTT100786558,
  author = {Toshiya Ando and Takeshi Matsuda and Kumiko Goto and Kimiko Hara and Akinori Ito and Junya Hirata and Joichiro Yatomi and Rei Kajitani and Miki Okuno and Katsushi Yamaguchi and Masaaki Kobayashi and Tomoyuki Takano and Yohei Minakuchi and Masahide Seki and Yutaka Suzuki and Kentaro Yano and Takehiko Itoh and Shuji Shigenobu and Atsushi Toyoda and Teruyuki Niimi},
  title = {Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles},
  journal = {Nature communications},
  year = 2018,
}

@article{CTT100747032,
  author = {Miki Okuno and Rei Kajitani and Rie Ryusui and Hiroya Morimoto and Yukiko Kodama and Takehiko Itoh},
  title = {Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization},
  journal = {DNA Research},
  year = 2016,
}

@article{CTT100747040,
  author = {Rei Kajitani and Kouta Toshimoto and Hideki Noguchi and Atsushi Toyoda and Yoshitoshi Ogura and Miki Okuno and Mitsuru Yabana and Masayuki Harada and Eiji Nagayasu and Haruhiko Maruyama and Yuji Kohara and Asao Fujiyama and Tetsuya Hayashi and Takehiko Itoh},
  title = {Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads},
  journal = {Genome Research},
  year = 2014,
}

@article{CTT100810841,
  author = {Masato Nikaido and Hideki Noguchi and Atsushi Toyoda and Yutaka Suzuki and Rei Kajitani and Hikoyuu Suzuki and Miki Okuno and Mitsuto Aibara and Benjamin P. Ngatunga and Semvua Mzighani and Hassan W.J. Kalombo and Kawilarang W.A. Masengi and Josef Tuda and Sadao Nogami and Ryuichiro Maeda and Masamitsu Iwata and Yoshitaka Abe and KOJI FUJIMURA and Masataka Okabe and Takanori Amano and Akiteru Maeno and Toshihiko Shiroishi and Sumio Sugano and Yuji Kohara and Asao Fujiyama and NORIHIRO OKADA},
  title = {Coelacanth genomes reveal signatures for evolutionary transition from water to land},
  journal = {Genome Research},
  year = 2013,
}

@inproceedings{CTT100917411,
  author = {小坂七海 and 原田佳樹 and 中里一星 and 奥野未来 and 伊藤武彦 and 矢守航 and 堤伸浩 and 有村慎一},
  title = {人工融合タンパク質によるオルガネラゲノム特異的なランダム変異導入技術. 形質転換T1世代の評価},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100917404,
  author = {小坂七海 and 原田佳樹 and 中里一星 and 奥野未来 and 伊藤武彦 and 矢守航 and 堤伸浩 and 有村慎一},
  title = {植物オルガネラゲノムの順遺伝学的解析を目的としたランダム変異導入技術の開発の試み},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100917393,
  author = {木村 優希 and Matiz Luisa and 奥野 未来 and 伊藤 武彦 and 水島 秀成 and 黒岩 麻里},
  title = {古顎類エミューにおける精巣決定遺伝子DMRT1の発現解析と卵巣決定候補遺伝子の探索},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917396,
  author = {小坂七海 and 原田佳樹 and 中里一星 and 奥野未来 and 伊藤武彦 and 矢守航 and 堤伸浩 and 有村慎一},
  title = {植物オルガネラゲノムの育種利用を目指したランダム変異導入手法の開発},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917397,
  author = {木村 優希 and Matiz Luisa and 奥野 未来 and 伊 藤 武彦 and 水島 秀成 and 黒岩 麻里},
  title = {エミューにおける精巣決定遺伝子DMRT1の発現解析と卵巣決定候補遺伝子の探索},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917359,
  author = {Matiz Luisa and Miki Okuno and Itoh Takehiko and Mizushima Shusei and Kuroiwa Asato},
  title = {Loss of the Y chromosome changes the configuration of the X inactivation center in the genus Tokudaia},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917391,
  author = {Nanami KOSAKA and Yoshiki HARADA and Issei NAKAZATO and 奥野 未来 and 伊藤 武彦 and Wataru YAMORI and Nobuhiro TSUTSUMI and Shin-ichi ARIMURA},
  title = {オルガネラゲノム特異的にランダムな変異を導入する2通りの技術の開発},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917388,
  author = {中里一星 and 奥野未来 and 伊藤武彦 and 堤伸浩 and 有村慎一},
  title = {高活性型の塩基置換酵素ptpTALECD_v2を用いた、シロイヌナズナの葉緑体ゲノムの標的一塩基置換},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917365,
  author = {Nanami KOSAKA and Yoshiki HARADA and Issei NAKAZATO and Miki OKUNO and Takehiko ITOH and Wataru YAMORI and Nobuhiro TSUTSUMI and Shin-ichi ARIMURA},
  title = {Development Of ATechnology For The Induction Of Plant-Organelle- Genome-Specific Random Mutagenesis},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917361,
  author = {Issei Nakazato and Miki Okuno and Takehiko Itoh and Nobuhiro Tsutsumi and Shin-ichi Arimura},
  title = {Targeted C-to-T base editing in the plastid genome of Arabidopsis thaliana by plastid-targeting base editors, ptpTALECD and ptpTALECD_v2},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100891441,
  author = {松岡健太朗 and 持丸侑太 and 奥野未来 and 清岡美穂 and 石崎比奈子 and 豊田敦 and 黒岩麻里 and 伊藤武彦},
  title = {トクノシマトゲネズミの新規ゲノム構築とX染色体上祖先Y領域の比較解析},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100891440,
  author = {持丸侑太 and 松岡健太朗 and 奥野未来 and 清岡美穂 and 石崎比奈子 and 豊田敦 and 黒岩麻里 and 伊藤武彦},
  title = {オキナワトゲネズミの新規ゲノム配列決定とneo性染色体のゲノム解析},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100851545,
  author = {Rei Kajitani and Miki Okuno and Hiroyuki Tanaka and Atsushi Toyoda and Takehiko Itoh},
  title = {Platanus-allee is a de novo haplotype assembler designed for organisms with highly divergent haplotypes: an update},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851544,
  author = {Miki Okuno and Rei Kajitani and Hiroyuki Tanaka and Shuhei Mizushima and Asato Kuroiwa and Takehiko Itoh},
  title = {Whole-genome sequencing and comparative analysis of Emu provides insights into sex chromosome evolution of the palaeognathae clade},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851541,
  author = {黒岩麻里 and 奥野未来 and 伊藤武彦 and 寺尾美穂 and 小川湧也 and 高田修治 and 水島秀成},
  title = {トゲネズミ属におけるSRY遺伝子に依存しない性決定の分子メカニズム},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100851542,
  author = {宮本淳太郎 and 奥野未来 and 伊藤武彦 and 水島秀成 and 黒岩麻里},
  title = {ニホンウズラにおける性分化関連遺伝子および新規性決定候補遺伝子の解析},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100809302,
  author = {小林 史弥 and 梶谷 嶺 and 奥野 未来 and 湯淺 英知 and 中村 優太 and 伊藤 武彦},
  title = {ドラフトゲノムに対応した遺伝子構造アノテーション自動構築パイプラインの開発},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100786611,
  author = {岡野真佑 and 奥野未来 and 梶谷嶺 and 黒岩麻里 and 伊藤武彦},
  title = {Y染色体をもたないアマミトゲネズミの遺伝子配列を用いた進化学的解析},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100767803,
  author = {梶谷嶺 and 吉村大 and 奥野未来 and 豊田敦 and 伊藤武彦},
  title = {Platanus2: a de novo haplotype assembler enabling comprehensive accesses to divergent heterozygous region},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767839,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 梶谷嶺 and 奥野未来 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を用いた菌株間系統樹推定パイプラインの開発},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767850,
  author = {奥野未来 and 立花広太 and 吉村大 and 森田有貴 and 梶谷嶺 and 古俣麻希子 and 白髭克彦 and 森川あすか and 伊藤武彦},
  title = {皮膚常在細菌Propionibacterium acnesの全ゲノム比較解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767837,
  author = {梶谷嶺 and 小椋義俊 and 後藤恭宏 and 吉村大 and 奥野未来 and 林哲也 and 伊藤武彦},
  title = {メタゲノムショットガンデータからの株ハプロタイプ配列構築手法の開発},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767847,
  author = {森田有貴 and 奥野未来 and 吉村大 and 立花広太 and 梶谷嶺 and 古俣麻希子 and 白髭克彦 and 森川あすか and 伊藤武彦},
  title = {次世代シークエンサを用いたSLSTによるPropionibacterium acnesタイピング解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100767907,
  author = {奥野未来 and 児玉由紀子 and 伊藤武彦},
  title = {異種交配株ラガービール酵母と近縁種のゲノム比較解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767928,
  author = {児玉由紀子 and 奥野未来 and 伊藤武彦},
  title = {次世代シーケンサーを用いた下面ビール酵母のゲノム解析},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100767929,
  author = {奥野未来 and 児玉由紀子 and 伊藤武彦},
  title = {single nucleotide variation (SNV)を考慮したラガービール酵母のゲノム再解析},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100747042,
  author = {Miki Okuno and Yukiko Kodama and Takehiko Itoh},
  title = {A whole genome comparison between lager brewing yeast Weihenstephan 34/70 and its ancestral strains},
  booktitle = {Yeast},
  year = 2013,
}

@inproceedings{CTT100747047,
  author = {Yukiko Kodama and Miki Okuno and Takehiko Itoh},
  title = {Whole genome analysis of a lager brewing yeast Weihenstephan 34/70 using next generation sequencing technology},
  booktitle = {Yeast},
  year = 2013,
}

@inproceedings{CTT100767933,
  author = {奥野未来 and 児玉由紀子 and 伊藤武彦},
  title = {Illuminaシークエンサを用いたラガービール酵母Weihenstephan34/70ゲノムの決定},
  booktitle = {},
  year = 2013,
}

@misc{CTT100701676,
  author = {奥野未来},
  title = {ハイスループットDNAシークエンスデータによる異質倍数体種Saccharomyces pastorianusの比較ゲノム解析},
  year = 2016,
}

@misc{CTT100701673,
  author = {奥野未来},
  title = {ハイスループットDNAシークエンスデータによる異質倍数体種Saccharomyces pastorianusの比較ゲノム解析},
  year = 2016,
}

@misc{CTT100717025,
  author = {奥野未来},
  title = {ハイスループットDNAシークエンスデータによる異質倍数体種Saccharomyces pastorianusの比較ゲノム解析},
  year = 2016,
}



@phdthesis{CTT100701676,
  author = {奥野未来},
  title = {ハイスループットDNAシークエンスデータによる異質倍数体種Saccharomyces pastorianusの比較ゲノム解析},
  school = {東京工業大学},
  year = 2016,
}

@phdthesis{CTT100701673,
  author = {奥野未来},
  title = {ハイスループットDNAシークエンスデータによる異質倍数体種Saccharomyces pastorianusの比較ゲノム解析},
  school = {東京工業大学},
  year = 2016,
}

@phdthesis{CTT100717025,
  author = {奥野未来},
  title = {ハイスループットDNAシークエンスデータによる異質倍数体種Saccharomyces pastorianusの比較ゲノム解析},
  school = {東京工業大学},
  year = 2016,
}