@book{CTT100744203, author = {本郷裕一}, title = {マトリョーシカ型共生が支えるシロアリの繁栄}, publisher = {新曜社}, year = 2016, } @book{CTT100744202, author = {本郷裕一}, title = {昆虫における共生の総論}, publisher = {化学同人}, year = 2016, } @book{CTT100661743, author = {本郷裕一}, title = {腸内微生物の生態}, publisher = {共立出版}, year = 2011, } @book{CTT100661744, author = {Yuichi Hongoh}, title = {Complete genome of an uncultured endosymbiont coupling nitrogen fixation to cellulolysis within protist cells in termite gut}, publisher = {Wiley-Blackwell}, year = 2011, } @book{CTT100614443, author = {Yuichi Hongoh and Moriya Ohkuma}, title = {Termite gut flagellates and their methanogenic and eubacterial symbionts}, publisher = {}, year = 2010, } @book{CTT100614442, author = {本郷裕一 and 大熊盛也}, title = {統計学的微生物群集構造の解析}, publisher = {シーエムシー出版}, year = 2009, } @book{CTT100614441, author = {本郷裕一 and 大熊盛也}, title = {Single Cellのゲノム解析}, publisher = {シーエムシー出版}, year = 2009, } @article{CTT100917046, author = {Kazuki Takakashi and Hirokazu Kuwahara and Yutaro Horikawa and Kazuki Izawa and Daiki Kato and Tatsuya Inagaki and Masahiro Yuki and Moriya Ohkuma and Yuichi Hongoh}, title = {Emergence of putative energy parasites within Clostridia revealed by genome analysis of a novel endosymbiotic clade}, journal = {The ISME Journal}, year = 2023, } @article{CTT100917044, author = {Jaclyn Thompson and Casey Barr and Lydia Babcock-Adams and Lina Bird and Eugenio La Cava and Arkadiy Garber and Yuichi Hongoh and Mark Liu and Kenneth H. Nealson and Akihiro Okamoto and Daniel Repeta and Shino Suzuki and Clarissa Tacto and Michelle Tashjian and Nancy Merino}, title = {Insights into the physiological and genomic characterization of three bacterial isolates from a highly alkaline, terrestrial serpentinizing system}, journal = {Frontiers in Microbiology}, year = 2023, } @article{CTT100892468, author = {Hirohito Aoki and Masahiro Yuki and Yuichi Hongoh and Yutaka YAMAGATA and Moriya Ohkuma}, title = {Agarose gel microcapsules enable easy-to-prepare, picolitre-scale, single-cell genomics, yielding high-coverage genome sequence}, journal = {Scientific Reports}, year = 2022, } @article{CTT100892467, author = {Kinjo Y. and Bourguignon T. and Hongoh Y. and Lo N. and Tokuda G. and Ohkuma M.}, title = {Coevolution of metabolic pathways in Blattodea and their Blattabacterium endosymbionts, and comparisons with other insect-bacteria symbiose}, journal = {Microbiology Spectrum}, year = 2022, } @article{CTT100875118, author = {Maneeploy Nualkul and Bundit Yuangsoi and Yuichi Hongoh and Akinori Yamada and Pinsurang Deevong}, title = {Improving the nutritional value and bioactivity of soybean meal in solid-state fermentation using Bacillus strains newly isolated from the gut of the termite Termes propinquus}, journal = {FEMS Microbiology Letters}, year = 2022, } @article{CTT100875111, author = {Katsura Igai and Osamu Kitade and Jieyang Fu and Kazumi Omata and Takahiro Yonezawa and Moriya Ohkuma and Yuichi Hongoh}, title = {Fine-scale genetic diversity and putative ecotypes of oxymonad protists coinhabiting the hindgut of Reticulitermes speratus}, journal = {Molecular Ecology}, year = 2022, } @article{CTT100832508, author = {Bourguignon T. and Kinjo Y. and Paula Villa-Martin and Nicholas V. Coleman and Qian Tang and Daej A. Arab and Zongqing Wang and Tokuda G. and Hongoh Y. and Ohkuma M. and Simon Y.W. Ho and Simone Pigolotti and Lo N.}, title = {Increased mutation rate is linked to genome reduction in prokaryotes}, journal = {Current Biology}, year = 2020, } @article{CTT100832276, author = {Merino N. and Kawai M. and Boyd E.S. and Colman D.R. and Shawn McGlynn and Nealson K. and Kurokawa K. and Hongoh Y.}, title = {Single-cell genomics of novel actinobacteria with the Wood-Ljungdahl pathway discovered in a serpentinizing system}, journal = {Frontiers in Microbiology}, year = 2020, } @article{CTT100832499, author = {Takeuchi M. and Kuwahara H. and Murakami T. and Takahashi K. and Kajitani R. and Toyoda A. and Itoh T. and Ohkuma M. and Hongoh Y}, title = {Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut}, journal = {The ISME Journal}, year = 2020, } @article{CTT100810498, author = {Takumi Murakami and Syu Onouchi and Katsura Igai and Moriya Ohkuma and Yuichi Hongoh}, title = {Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis}, journal = {FEMS Microbiology Ecology}, year = 2019, } @article{CTT100911795, author = {Yuniar Devi Utami and Hirokazu Kuwahara and Katsura Igai and Takumi Murakami and Kaito Sugaya and Takahiro Morikawa and Yuichi Nagura and Masahiro Yuki and Pinsurang Deevong and Tetsushi Inoue and Kumiko Kihara and Nathan Lo and Akinori Yamada and Moriya Ohkuma and Yuichi Hongoh}, title = {Genome analyses of uncultured TG2/ZB3 bacteria in ‘Margulisbacteria’ specifically attached to ectosymbiotic spirochetes of protists in the termite gut}, journal = {The ISME Journal}, year = 2019, } @article{CTT100810491, author = {Eri Nishiyama and Kouichi Higashi and Hiroshi Mori and Konomi Suda and Hitomi Nakamura and Soichi Omori and Shigenori Maruyama and Yuichi Hongoh and Ken Kurokawa}, title = {The relationship between microbial community structures and environmental parameters revealed by metagenomic analysis of hot spring water in the Kirishima area, Japan}, journal = {Frontiers in Bioengineering and Biotechnology}, year = 2018, } @article{CTT100780883, author = {Takumi Murakami and Takahiro Segawa and Nozomu Takeuchi and Gonzalo Barcaza Sepúlveda and Pedro Labarca and Shiro Kohshima and Yuichi Hongoh}, title = {Metagenomic analyses highlight the symbiotic association between the glacier stonefly Andiperla willinki and its bacterial gut community}, journal = {Environmental Microbiology}, year = 2018, } @article{CTT100780882, author = {Yukihiro Kinjo and Thomas Bourguignon and Kwei Jun Tong and Hirokazu Kuwahara and Sang Jin Lim and Kwang Bae Yoon and Shuji Shigenobu and Yung Chul Park and Christine A. Nalepa and Yuichi Hongoh and Moriya Ohkuma and Nathan Lo and Gaku Tokuda}, title = {Parallel and gradual genome erosion in the Blattabacterium endosymbionts of Mastotermes darwiniensis and Cryptocercus wood roaches}, journal = {Genome Biology and Evolution}, year = 2018, } @article{CTT100780874, author = {Yuniar Devi Utami and Hirokazu Kuwahara and Takumi Murakami and Takahiro Morikawa and Kaito Sugaya and Kumiko Kihara and Masahiro Yuki and Nathan Lo and Pinsurang Deevong and Sasitorn Hasin and Warin Boonriam and Tetsushi Inoue and Akinori Yamada and Moriya Ohkuma and Yuichi Hongoh}, title = {Phylogenetic diversity and single-cell genome analysis of "Melainabacteria", a non-photosynthetic cyanobacterial group, in the termite gut}, journal = {Microbes and Envitonments}, year = 2018, } @article{CTT100780869, author = {Masahiro Yuki and Mitsuo Sakamoto and Hirokazu Kuwahara and Yuichi Hongoh and Moriya Ohkuma}, title = {Draft genome sequence of Lactococcus sp. strain Rs-Y01, isolated from the gut of the lower termite Reticulitermes speratus}, journal = {Genome Announcements}, year = 2017, } @article{CTT100780864, author = {Kazuki Izawa and Hirokazu Kuwahara and Kaito Sugaya and Nathan Lo and Moriya Ohkuma and Yuichi Hongoh}, title = {Discovery of ectosymbiotic Endomicrobium lineages associated with protists in the gut of stolotermitid termites}, journal = {Environmental Microbiology Reports}, year = 2017, } @article{CTT100747027, author = {Ajeng Pramono and Hirokazu Kuwahara and Takehiko Itoh and Toyoda Atsushi and Akinori Yamada and Hongoh Y}, title = {Discovery and complete genome sequence of a bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut}, journal = {Microbes and environments}, year = 2017, } @article{CTT100744193, author = {Kuwahara H. and Yuki M. and Izawa K. and Ohkuma M. and Hongoh Y.}, title = {Genome of ‘Ca. Desulfovibrio trichonymphae’, an H2-oxidizing bacterium in a tripartite symbiotic system within a protist cell in the termite gut}, journal = {The ISME Journal}, year = 2017, } @article{CTT100744200, author = {Takumi Murakami and Takahiro Segawa and Roman Dial and Nozomu Takeuchi and Shiro Kohshima and Yuichi Hongoh}, title = {Bacterial microbiota associated with the glacier ice worm is dominated by both worm-specific and glacier-derived facultative lineage}, journal = {}, year = 2017, } @article{CTT100744192, author = {Takahiro Yonezawa and Takahiro Segawa and Hiroshi Mori and Paula F. campos and Yuichi Hongoh and Hideki Endo and Ayumi Akiyoshi and Naoki Kohno and Shin Nishida and Jiaqi Wu and Haofei Jin and Jun Adachi and Hirohisa Kishino and Ken Kurokawa and Yoshifumi Nogi and Hideyuki Tanabe and Harutaka Mukoyama and Kunio Yoshida and Armand Rasoamiaramanana and Satoshi Yamagishi and Yoshihiro Hayashi and Akira Yoshida and Hiroko Koike and Fumihito Akishinonomiya and Eske Willerslev and Masami Hasegawa}, title = {Phylogenomics and morphology of extinct paleognaths reveal the origin and evolution of the ratites}, journal = {Current Biology}, year = 2017, } @article{CTT100734568, author = {Katsuo Mogi and Chikako Shirataki and Kumiko Kihara and Hirokazu Kuwahara and Yuichi Hongoh and Takatoki Yamamoto}, title = {Trapping and isolation of single prokaryotic cells in a micro-chamber array using dielectrophoresisaryotic cells in a micro-chamber array using dielectrophoresis}, journal = {RSC Advances}, year = 2016, } @article{CTT100786547, author = {Kazuki Izawa and Hirokazu Kuwahara and Kumiko Kihara and Masahiro Yuki and Nathan Lo and Takehiko Itoh and Moriya Ohkuma and Yuichi Hongoh}, title = {Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA}, journal = {Genome biology and evolution}, year = 2016, } @article{CTT100736093, author = {Kazuki Izawa and Hirokazu Kuwahara and Kumiko Kihara and Masahiro Yuki and Nathan Lo and Moriya Ohkuma and Yuichi Hongoh}, title = {Comparison of intracellular “Ca. Endomicrobium trichonymphae” genomovars illuminates the requirement and decay of defense systems against foreign DNA}, journal = {Genome Biology and Evolution}, year = 2016, } @article{CTT100717637, author = {Katsura Igai and Manabu Itakura and Suguru Nishijima and Hiroto Tsurumaru and Wataru Suda and Takumi Tsutaya and Eriko Tomitsuka and Kiyoshi Tadokoro and Jun Baba and Shingo Odani and Kazumi Natsuhara and Ayako Morita and Minoru Yoneda and Andrew R. Greenhill1 and Paul F. Horwood and Jun-Ichi Inoue and Moriya Ohkuma and Yuichi Hongoh and Taro Yamamoto and Peter Siba and Masahira Hattori and Kiwamu Minamisawa and Masahiro Umezaki}, title = {Nitrogen fixation and nifH diversity in human gut microbiota}, journal = {Scientific Reports}, year = 2016, } @article{CTT100717628, author = {Hao Zheng and Carsten Dietrich and Yuichi Hongoh and Andreas Brune}, title = {Restriction-modification systems as mobile genetic elements in the evolution of an intracellular symbiont}, journal = {Molecular Biology and Evolution}, year = 2016, } @article{CTT100714120, author = {Masahiro Yuki and Hirokazu Kuwahara and Masaki Shintani and Kazuki Izawa and Tomoyuki Sato and David Starns and Yuichi Hongoh and Moriya Ohkuma}, title = {Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose}, journal = {Environmental Microbiology}, year = 2015, } @article{CTT100714097, author = {Moriya Ohkuma and Satoko Noda and Satoshi Hattori and Toshiya Iida and Masahiro Yuki and David Starns and Jun-Ichi Inoue and Alistair C. Darby and Yuichi Hongoh}, title = {Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist.}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, year = 2015, } @article{CTT100714085, author = {Ajeng K. Pramono and Mitsuo Sakamoto and Takao Iino and Yuichi Hongoh and Moriya Ohkuma}, title = {Dysgonomonas termitidis sp. nov., isolated from the gut of the subterranean termite Reticulitermes speratus}, journal = {International Journal of Systematic and Evolutionary Microbiology}, year = 2015, } @article{CTT100714088, author = {Kaoru Kawafune and Yuichi Hongoh and Takashi Hamaji and Tomoaki Sakamoto and Tetsuya Kurata and Shunsuke Hirooka and Shin-ya Miyagishima and Hisayoshi Nozaki}, title = {Two different rickettsial bacteria invading Volvox carteri}, journal = {PLoS One.}, year = 2015, } @article{CTT100714086, author = {Jun-Ichi Inoue and Kenshiro Ohshima and Wataru Suda and Mitsuo Sakamoto and Takao Iino and Satoko Noda and Yuichi Hongoh and Masahira Hattori and Moriya Ohkuma}, title = {Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes}, journal = {Microbes and Environments}, year = 2015, } @article{CTT100714089, author = {Takumi Murakami and Takahiro Segawa and Dylan Bodington and Roman Dial and Nozomu Takeuchi and Shiro Kohshima and Yuichi Hongoh}, title = {Census of bacterial microbiota associated with the glacier ice worm Mesenchytraeus solifugus}, journal = {FEMS Microbiology Ecology}, year = 2015, } @article{CTT100806080, author = {Guichard, P. and Hachet, V. and Majubu, N. and Neves, A. and Demurtas, D. and Olieric, N. and Fluckiger, I. and Yamada, A. and Kihara, K. and Steinmetz, M. and Yuichi Hongoh and Goenczy, P.}, title = {Native architecture of the centriole proximal region reveals features underlying its 9-fold radial symmetry}, journal = {FEBS JOURNAL}, year = 2014, } @article{CTT100714542, author = {Toshiaki Kudo and Tomomi Nakahara and Xiaochi Zhang and Shigeto Taniyama and Osamu Arakawa and Shinji Murase and Hideaki Nakata and Kenshiro Ohshima and Wataru Suda and Keiko KItamura and Toshiya Iida and Yumi Oshida and Tetsushi Inoue and Yuichi Hongoh and Masahira Hattori and Moriya Ohkuma}, title = {Draft genome sequences of Geomicrobium sp. strains JCM 19037,JCM 19038, JCM 19039, and JCM 19055, isolated from aquatic samples}, journal = {Genome Announcements}, year = 2014, } @article{CTT100714544, author = {Toshiaki Kudo and Ayumi Kawauchi and Tomomi Nakahara and Xiaochi Zhang and Shigeto Taniyama and Tomohiro Takatani and Osamu Arakawa and Kenshiro Ohshima and Wataru Suda and Keiko KItamura and Toshiya Iida and Takao Iino and Tetsushi Inoue and Yuichi Hongoh and Masahira Hattori and Moriya Ohkuma}, title = {Draft genome sequences of Vibrio sp. strains isolated from tetrodotoxin-bearing scavenging gastropod.}, journal = {Genome Announcements}, year = 2014, } @article{CTT100714288, author = {Toshiaki Kudo and Kazuaki Sakamoto and Masashi Akinaga and Ayumi Kawauchi and Tomomi Nakahara and Xiaochi Zhang and Akinori Yamada and Kenshiro Ohshima and Wataru Suda and Hirokazu Kuwahara and Nobuyuki Nakamura and Yuichi Nogi and Keiko KItamura and Masahiro Yuki and Toshiya Iida and Shigeharu Moriya and Tetsushi Inoue and Yuichi Hongoh and Masahira Hattori and Moriya Ohkuma}, title = {Draft genome sequences of cyclodextrin-producing alkaliphilic Bacillus strains JCM 19045, JCM 19046, and JCM 19047}, journal = {}, year = 2014, } @article{CTT100664309, author = {Suda K. and Ueno Y. and Yoshizaki M. and Hitomi Nakamura and Eri Nishiyama and Yoshino K. and Hongoh Y. and Kawachi K. and Omori S. and keita Yamada and Yoshida N. and Maruyama S.}, title = {Origin of methane in serpentinite-hosted hydrothermal system: the CH4-H2-H2O hydrogen isotope systematics of the Happo hot spring.}, journal = {Earth and Planetary Science Letters}, year = 2014, } @article{CTT100804992, author = {Nakabachi, A. and Ishida, K. and Yuichi Hongoh and Ohkuma, M. and Miyagishima and S.-Y.}, title = {Aphid gene of bacterial origin encodes a protein transported to an obligate endosymbiont}, journal = {Current Biology}, year = 2014, } @article{CTT100663268, author = {Paul Guichard and Virginie Hachet and Norbert Majubu and Aitana Neves and Davide Demurtas and Natacha Olieric and Isabelle Fluckiger and Akinori Yamada and Kumiko Kihara and Nishida Yuichiro and Shigeharu Moriya and Michel O. Steinmetz and Yuichi Hongoh and Pierre Gönczy}, title = {Native architecture of the centriole proximal region reveals novel features underlying their 9-fold radial symmetry.}, journal = {Current Biology}, year = 2013, } @article{CTT100663249, author = {Satoshi Hattori and Yuichi Hongoh and Takashi Itoh and Pinsurang Deevong and Savitr Trakulnaleamsai and Napavarn Noparatnaraporn and Toshiaki Kudo and Moriya Ohkuma}, title = {Sporomusa intestinalis sp. nov., a homoacetogenic bacterium isolated from the gut of a higher termite, Termes comis (Termitinae)}, journal = {Journal of General and Applied Microbiology}, year = 2013, } @article{CTT100663981, author = {Haruyo Yamaguchi and Takeshi Nakayama and Hongoh Yuichi and Masanobu Kawachi and Isao Inouye}, title = {Molecular diversity of endosymbiotic Nephroselmis (Nephroselmidophyceae) in Hatena arenicola (Katablepharidophycota).}, journal = {Journal of Plant Research}, year = 2013, } @article{CTT100663278, author = {Atsushi Nakabachi and Reiko Ueoka and Kenshirou Oshima and Roberta Teta and Alfonso Mangoni and Mihaela Gurgui and Neil J. Oldham and Gerhild van Echten-Deckert and Keiko Okamura and Kohei Yamamoto and Hiromitsu Inoue and Moriya Ohkuma and Yuichi Hongoh and Shin-ya Miyagishima and Shouhei Hattori and Jörn Piel and Takema Fukatsu}, title = {Defensive bacteriome symbiont with a drastically reduced genome.}, journal = {Current Biology}, year = 2013, } @article{CTT100664013, author = {Zheng H. and Bodington D. and Zhang C. and Miyanaga K. and Tanji Y. and Hongoh Y.* and Xing X.-H.}, title = {Comprehensive phylogenetic diversity of [FeFe]-hydrogenase genes in termite gut microbiota.}, journal = {Microbes and Environments}, year = 2013, } @article{CTT100664314, author = {Sato T. and Hirokazu Kuwahara and Fujita K. and Satoko Noda and Kihara K. and Yamada A. and Ohkuma M. and Hongoh Y.}, title = {Intranuclear verrucomicrobial symbionts and evidence of lateral gene transfer to the host protist in the termite gut.}, journal = {The ISME Journal}, year = 2013, } @article{CTT100664310, author = {Kaoru Kawafune and Yuichi Hongoh and Hisayoshi Nozaki}, title = {A rickettsial endosymbiont inhabiting the cytoplasm of Volvox carteri (Volvocales, Chlorophyceae).}, journal = {Phycologia}, year = 2013, } @article{CTT100664305, author = {Nakabachi A. and Naruo Nikoh and Oshima K. and Inoue H. and Ohkuma M. and Hongoh Y. and Miyagishima S. and Hattori M. and Fukatsu T.}, title = {Horizontal gene acquisition of Liberibacter plant pathogens from a bacteriome-confined endosymbiont of their psyllid vector.}, journal = {PLoS ONE}, year = 2013, } @article{CTT100805494, author = {本郷裕一}, title = {ゲノムから解き明かす難培養微生物の機能}, journal = {日本乳酸菌学会誌 = Journal of Japan Society for Lactic Acid Bacteria}, year = 2012, } @article{CTT100662712, author = {Kaoru Kawafune and Yuichi Hongoh and Takashi Hamaji and Hisayoshi Nozaki}, title = {Molecular identification of rickettsial endosymbionts in the non-phagotrophic volvovalean green algae.}, journal = {PLoS ONE}, year = 2012, } @article{CTT100806011, author = {Kawafune, K. and Yuichi Hongoh and Hamaji, T. and Nozaki, H.}, title = {MOLECULAR IDENTIFICATION OF RICKETTSIACEAN ENDOSYMBIONTS IN THE VOLVOCALEANS, CARTERIA CERASIFORMIS AND PLEODORINA JAPONICA (CHLOROPHYTA)}, journal = {JOURNAL OF PHYCOLOGY}, year = 2011, } @article{CTT100805245, author = {Bodington Dylan and 瀬川 高弘 and 本郷裕一 and 幸島 司郎}, title = {ヒマラヤの氷河上細菌群集の高度変化:16S rRNA遺伝子に基づく解析}, journal = {雪氷研究大会講演要旨集}, year = 2010, } @article{CTT100585494, author = {Satoko Noda and Yuichi Hongoh and Tomoyuki Sato and Moriya Ohkuma}, title = {Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites}, journal = {BMC Evolutionary Biology}, year = 2009, } @article{CTT100576751, author = {Tomoyuki Sato and Yuichi Hongoh and Satoko Noda and Satoshi Hattori and Sadaharu Ui and Moriya Ohkuma}, title = {Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut}, journal = {Environmental Microbiology}, year = 2009, } @article{CTT100576758, author = {Moriya Ohkuma and Satoko Noda and Yuichi Hongoh and Christine C. Nalepa and Tetsushi Inoue}, title = {Inheritance and diversification of symbiotic trichonymphid flagellates from a common ancestor of termites and cockroach Cryptocercus}, journal = {Proceedings of the Royal Society B}, year = 2009, } @article{CTT100576725, author = {Yuichi Hongoh and Vineet K. Sharma and Tulika Prakash and Satoko Noda and Hidehiro Toh and Todd D. Taylor and Toshiaki Kudo and Yoshiyuki Sakaki and Toyoda Atsushi and Masahira Hattori and Moriya Ohkuma}, title = {Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut}, journal = {Science}, year = 2008, } @article{CTT100576743, author = {Yuichi Hongoh and Vineet K. Sharma and Tulika Prakash and Satoko Noda and Todd D. Taylor and Toshiaki Kudo and yoshiyuki sakaki and Toyoda Atsushi and Masahira Hattori and Moriya Ohkuma}, title = {Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, year = 2008, } @article{CTT100576765, author = {Jun-Ichi Inoue and Satoko Noda and Yuichi Hongoh and Sadaharu Ui and Moriya Ohkuma}, title = {Identification of endosymbiotic methanogens and ectosymbiotic spirochetes of gut protists of the termite Coptotermes formosanus}, journal = {Microbes and Environments}, year = 2008, } @article{CTT100576769, author = {Yuichi Hongoh and Tomoyuki Sato and Satoko Noda and Sadaharu Ui and Toshiaki Kudo and Moriya Ohkuma}, title = {Candidatus Symbiothrix dinenymphae: bristle-like Bacteroidales ectosymbionts of termite gut protists}, journal = {Environmental Microbiology}, year = 2007, } @article{CTT100576767, author = {Yuichi Hongoh and Tomoyuki Sato and Michael F. Dolan and Satoko Noda and Moriya Ohkuma}, title = {The motility symbiont of the termite-gut flagellate Caduceia versatilis is a member of the “Synergistes” group}, journal = {Applied and Environmental Microbiology}, year = 2007, } @article{CTT100576784, author = {Akinori Yamada and Tetsushi Inoue and Satoko Noda and Yuichi Hongoh and Moriya Ohkuma}, title = {Evolutionary trend of phylogenetic diversity of nitrogen fixation genes in the gut community of wood-feeding termites}, journal = {Molecular Ecology}, year = 2007, } @article{CTT100576785, author = {Moriya Ohkuma and Tomoyuki Sato and Satoko Noda and Sadaharu Ui and Toshiaki Kudo and Yuichi Hongoh}, title = {The candidate phylum ‘Termite Group 1’ of bacteria: phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists}, journal = {FEMS Microbiology Ecology}, year = 2007, } @article{CTT100576787, author = {Satoko Noda and Osamu Kitade and Tetsushi Inoue and Miho Kawai and Kanuka M. and Hiroshima K. and Yuichi Hongoh and Constantino R. and Uys V. and Zhong J. and Toshiaki Kudo and Moriya Ohkuma}, title = {Coevolutionary history of a triplex symbiotic system of termites, their gut protists, and bacterial endosymbionts of the protists}, journal = {Molecular Ecology}, year = 2007, } @article{CTT100582027, author = {Yuichi Hongoh and Pinsurang Deevong and Satoshi Hattori and Tetsushi Inoue and Satoko Noda and Napavarn Noparatnaraporn and Toshiaki Kudo and Moriya Ohkuma}, title = {Phylogenetic diversity, localization, and cell morphologies of members of the candidate phylum TG3 and a subphylum in the phylum Fibrobacteres, recently discovered bacterial groups dominant in termite guts}, journal = {Applied and Environmental Microbiology}, year = 2006, } @article{CTT100582033, author = {Tetsushi Inoue and Yoko Takematsu and Akinori Yamada and Yuichi Hongoh and Johjima Toru and Shigeharu Moriya and Yupaporn Sornnuwat and Charunee Vongkaluang and Moriya Ohkuma and Toshiaki Kudo}, title = {Diversity and abundance of termites along an altitudinal gradients in Khao Kitchagoot National Park, Thailand}, journal = {Journal of Tropical Ecology}, year = 2006, } @article{CTT100582035, author = {Pinsurang Deevong and Yuichi Hongoh and Tetsushi Inoue and Savitr Trakulnaleamsai and Toshiaki Kudo and Napavarn Noparatnaraporn and Moriya Ohkuma}, title = {Effect of temporal preservation on molecular study of complex microbial community in the gut of the termite Microcerotermes sp.}, journal = {Microbes and Environments}, year = 2006, } @article{CTT100582049, author = {Yuichi Hongoh and Lukkaew Ekpornprasit and Tetsushi Inoue and Shigeharu Moriya and Savitr Trakulnaleamsai and Moriya Ohkuma and Napavarn Noparatnaraporn and Toshiaki Kudo}, title = {Intracolony variation of bacterial gut microbiota in the fungus-growing termite Macrotermes gilvus}, journal = {Molecular Ecology}, year = 2006, } @article{CTT100582053, author = {Satoko Noda and Tetsushi Inoue and Yuichi Hongoh and Miho Kawai and Christine A. Nalepa and Charunee Vongkaluang and Toshiaki Kudo and Moriya Ohkuma}, title = {Identification and characterization of ectosymbionts of distinct lineages in Bacteroidales attached to flagellated protists in the gut of termites and a wood-feeding cockroach}, journal = {Environmental Microbiology}, year = 2006, } @article{CTT100582045, author = {Hideaki Nakajima and Yuichi Hongoh and Satoko Noda and Yasuhiko Yoshida and Ron Usami and Toshiaki Kudo and Moriya Ohkuma}, title = {Phylogenetic and morphological diversity of Bacteroidales members associated with gut wall of termites}, journal = {Bioscience, Biotechnology and Biochemistry}, year = 2006, } @article{CTT100589096, author = {Yuichi Hongoh and Pinsurang Deevong and Tetsushi Inoue and Savitr Trakulnaleamsai and Moriya Ohkuma and Charunee Vongkaluang and Noparatnaraporn and Toshiaki Kudo}, title = {Intra- and interspecific comparisons of bacterial diversity and community structure support coevolution of gut microbiota and termite host}, journal = {Applied and Environmental Microbiology}, year = 2005, } @article{CTT100589093, author = {Hideaki Nakajima and Yuichi Hongoh and Ron Usami and Toshiaki Kudo and Moriya Ohkuma}, title = {Spatial distribution of bacterial phylotypes in the gut of the termite Reticulitermes speratus and bacterial community on the gut epithelium}, journal = {FEMS Microbiology Ecology}, year = 2005, } @article{CTT100589091, author = {Taksawan Thongaram and Yuichi Hongoh and Saori Kosono and Moriya Ohkuma and Savitr Trakulnaleamsai and Napavarn Noparatnaraporn and Toshiaki Kudo}, title = {Comparison of bacterial communities in the alkaline gut segment among various species of higher termites}, journal = {Extremophile}, year = 2005, } @article{CTT100589086, author = {Tetsushi Inoue and Yuichi Hongoh and Chirasak Klanglaew and Yoko Takematsu and Charunee Vongkaluang and Moriya Ohkuma and Toshiaki Kudo}, title = {Plasticity and specificity of termite nest structure (Isoptera)}, journal = {Sociobiology}, year = 2005, } @inproceedings{CTT100916625, author = {村上匠 and 瀬川高弘 and 森宙史 and 本郷裕一 and 竹内望}, title = {氷河微生物群集「クリオコナイト」の形成過程をメタゲノムデータから解き明かす}, booktitle = {}, year = 2024, } @inproceedings{CTT100917110, author = {Kazuki Takahashi and Hirokazu Kuwahara and Yuutarou Horikawa and Kazuki Izawa and Tatsuya Inagaki and Masahiro Yuki and Moriya Ohkuma and Yuichi Hongoh}, title = {Discovery and evolution of obligately-intracellular parasites belonging to the class Clostridia}, booktitle = {}, year = 2023, } @inproceedings{CTT100917106, author = {金子真之 and 大森樹生 and 猪飼桂 and 間渕貴子 and 西原 亜理沙 and 木原久美子 and 吉村剛 and 大熊盛也 and 本郷裕一}, title = {シロアリ腸内原生生物細胞内共生メタン菌の生態とゲノム解析}, booktitle = {}, year = 2023, } @inproceedings{CTT100916620, author = {板垣優大 and 高橋一樹 and 雪真弘 and 清水美智留 and 村上匠 and 大熊盛也 and 本郷裕一}, title = {シロアリ腸内で優占するBetaproteobacteria綱細菌の1細胞ゲノム解析}, booktitle = {}, year = 2023, } @inproceedings{CTT100916621, author = {齋藤崇登 and 室岡聡 and 猪飼桂 and 高橋一樹 and 佐藤朋之 and 村上匠 and 大熊盛也 and 本郷裕一}, title = {他細菌種に特異的に付着共生するAlphaproteobacteria の形態とゲノム解析}, booktitle = {}, year = 2023, } @inproceedings{CTT100916618, author = {村上匠 and 瀬川高弘 and 森宙史 and 本郷裕一 and 竹内望}, title = {様々な地域の氷河を対象とした細菌群集メタゲノム解析}, booktitle = {}, year = 2023, } @inproceedings{CTT100916624, author = {大須賀奨 and 高橋一樹 and 猪飼桂 and 雪真弘 and 清水美智留 and 桑原宏和 and 村上匠 and 大熊盛也 and 本郷裕一}, title = {シロアリ腸内原生生物に細胞内共生するPlanctomycetota 門細菌の発見とゲノム解析}, booktitle = {}, year = 2023, } @inproceedings{CTT100916623, author = {Fu Jieyang and Liu Yiting and 猪飼桂 and 桑原宏和 and 木原久美子 and 村上匠 and 大熊盛也 and 本郷 裕一}, title = {シロアリ腸内原生生物Mixotricha paradoxa と2種の細胞表面付着共生細菌の共生機構の解析}, booktitle = {}, year = 2023, } @inproceedings{CTT100916622, author = {杉山奈緒 and 高橋一樹 and 関謙二郎 and 堀川雄太郎 and 佐藤朋之 and 桑原宏和 and 村上匠 and 大熊盛也 and 本郷裕一}, title = {シロアリ腸内原生生物細胞共生Mycoplasmatota 門細菌の生態とゲノム解析}, booktitle = {}, year = 2023, } @inproceedings{CTT100917103, author = {髙橋一樹 and 桑原宏和 and 堀川雄太郎 and 伊澤和輝 and 加藤大貴 and 稲垣辰哉 and 雪真弘 and 大熊盛也 and 本郷裕一}, title = {細胞内寄生性クロストリディア綱細菌の発見と寄生体進化プロセスの解明}, booktitle = {}, year = 2023, } @inproceedings{CTT100892485, author = {本郷裕一}, title = {ゲノミクスで解き明かす未培養微生物間細胞共生系の実態}, booktitle = {}, year = 2023, } @inproceedings{CTT100892482, author = {Kazuki Takahashi and Hirokazu Kuwahara and Yuutarou Horikawa and Kazuki Izawa and Tatsuya Inagaki and Masahiro Yuki and Moriya Ohkuma and Yuichi Hongoh}, title = {Parasitic lifestyle and genome evolution of novel endosymbiotic clostridia of the protists inhabiting the termite gut}, booktitle = {}, year = 2023, } @inproceedings{CTT100888086, author = {田守正樹 and 竹花康弘 and 山田章 and 佐久間敦丈 and 二階堂雅人 and 猪飼桂 and 本郷裕一}, title = {組換えソフニン候補タンパク質はナマコの真皮を軟化させる,}, booktitle = {}, year = 2022, } @inproceedings{CTT100892484, author = {本郷裕一}, title = {めくるめくシロアリ腸内複雑共生系〜虫屋の目で見る微生物多様性〜}, booktitle = {}, year = 2022, } @inproceedings{CTT100875100, author = {猪飼桂 and 北出理 and Fu Jieyang and 尾又 一実 and 米澤 隆弘 and 大熊盛也 and 本郷裕一}, title = {シロアリ腸内共生原生生物群集におけるエコタイプ・シミュレーション解析}, booktitle = {}, year = 2021, } @inproceedings{CTT100838641, author = {Yuichi Hongoh}, title = {Multi-layered symbiotic system in the termite gut}, booktitle = {}, year = 2020, } @inproceedings{CTT100838644, author = {Yuichi Hongoh}, title = {Multi-layered symbiotic system in the termite gut}, booktitle = {}, year = 2019, } @inproceedings{CTT100838647, author = {Yuichi Hongoh}, title = {Multi-layered symbiotic system in the termite gut}, booktitle = {}, year = 2019, } @inproceedings{CTT100838649, author = {本郷裕一}, title = {シロアリ腸内に共生する非光合成シアノバクテリアとその近縁系統群のゲノム解析}, booktitle = {}, year = 2019, } @inproceedings{CTT100781044, author = {Yuichi Hongoh}, title = {Genomics of uncultivable bacteria deciphers the multilayered symbiotic system in the termite gut}, booktitle = {}, year = 2018, } @inproceedings{CTT100781043, author = {Yuichi Hongoh}, title = {Multilayered-symbiotic system in the termite gut}, booktitle = {}, year = 2018, } @inproceedings{CTT100781042, author = {Yuichi Hongoh}, title = {Genomics of uncultivable bacteria deciphers multilayered symbiotic system in the termite gut}, booktitle = {}, year = 2018, } @inproceedings{CTT100781041, author = {Yuichi Hongoh}, title = {Multi-layered symbiotic system in the termite gut}, booktitle = {}, year = 2018, } @inproceedings{CTT100780841, author = {Yuniar Devi Utami and Hirokazu Kuwahara and Katsura Igai and Takumi Murakami and Takahiro Morikawa and Kaito Sugaya and Masahiro Yuki and Akinori Yamada and Moriya Ohkuma and Yuichi Hongoh}, title = {Genome analyses of uncultured ZB3/TG2 bacteria (“Margulisbacteria”) attached to ectosymbiotic spirochetes of protist cells in the termite gut}, booktitle = {}, year = 2018, } @inproceedings{CTT100781040, author = {Yuichi Hongoh}, title = {Genomics of uncultivable bacteria deciphers multilayered symbiotic system in the termite gut}, booktitle = {}, year = 2018, } @inproceedings{CTT100781039, author = {Yuichi Hongoh}, title = {Single-cell genomics deciphers the termite gut ecosystem}, booktitle = {}, year = 2018, } @inproceedings{CTT100780819, author = {ウタミ ユニア デビ and 桑原宏和 and 村上匠 and 猪飼桂 and 守川貴裕 and 菅谷快斗 and 雪真弘 and 山田明徳 and 大熊盛也 and 本郷裕一}, title = {Genome analyses of non-photosynthetic cyanobacteria associated with protist cells in the termite gut}, booktitle = {}, year = 2018, } @inproceedings{CTT100780831, author = {Takumi Murakami and Takahiro Segawa and Nozomu Takeuchi and Pedro Labarca and Gonzalo Barcaza Sepúlveda and Shiro Kohshima and Yuichi Hongoh}, title = {Analyses on the community structure and metagenome of the bacterial consortium from the gut of glacier stonefly}, booktitle = {}, year = 2018, } @inproceedings{CTT100780823, author = {名倉有一 and 桑原宏和 and 原田 真実 and 豊田敦 and 大熊盛也 and 本郷裕一}, title = {シロアリ腸内原生生物の核内に共生する未培養Verrucomicrobia門細菌の多様性とゲノム解析}, booktitle = {}, year = 2018, } @inproceedings{CTT100780827, author = {村上匠 and 瀬川高弘 and 竹内望 and ラバルサペドロ and Sepúlveda Gonzalo Barcaza and 幸島司郎 and 本郷裕一}, title = {氷河に生息するカワゲラの腸内細菌叢メタゲノム解析}, booktitle = {}, year = 2018, } @inproceedings{CTT100780830, author = {金城幸宏 and ブルギニョン トーマス and 本郷裕一 and ロウネーサン and 徳田岳}, title = {ムカシシロアリおよびキゴキブリの細胞内共生細菌ゲノムの平行退縮進化}, booktitle = {}, year = 2018, } @inproceedings{CTT100780810, author = {川舩 かおる and 桑原宏和 and 坂本智昭 and 倉田哲也 and 廣岡俊亮 and 宮城島進也 and 野崎久義 and 本郷裕一}, title = {光合成生物の細胞質内に共生するリケッチアのゲノム解析}, booktitle = {}, year = 2017, } @inproceedings{CTT100780804, author = {小野内思有 and 村上匠 and 大熊盛也 and 本郷裕一}, title = {食材性オオゴキブリ腸内線虫の体表に共生する細菌群集}, booktitle = {}, year = 2017, } @inproceedings{CTT100780805, author = {坪井亜里沙 and 本郷裕一 and 守屋繁春}, title = {Total RNA Seqを用いたアマゾン流域のネグロ川における微生物群集構造と発現遺伝子の解析}, booktitle = {}, year = 2017, } @inproceedings{CTT100781038, author = {本郷裕一}, title = {シロアリはなぜ木だけを食べて生きられるのか}, booktitle = {}, year = 2017, } @inproceedings{CTT100780798, author = {Ajeng Pramono and Hirokazu Kuwahara and Takehiko Itoh and Toyoda Atsushi and Moriya Ohkuma and Akinori Yamada and Yuichi Hongoh}, title = {Bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut, Prorhinotermes japonicus (Isoptera: family Rhinotermitidae)}, booktitle = {}, year = 2017, } @inproceedings{CTT100780797, author = {Takumi Murakami and Takahiro Segawa and Nozomu Takeuchi and Pedro Labarca and Gonzalo Barcaza Sepúlveda and Shiro Kohshima and Yuichi Hongoh}, title = {Analyses of bacterial community structures associated with glacier-adapted invertebrates}, booktitle = {}, year = 2017, } @inproceedings{CTT100780794, author = {村上匠 and 瀬川高弘 and 竹内望 and ラバルサペドロ and セプルベーダ ゴンサロ バルサーサ and 幸島司郎 and 本郷裕一}, title = {パタゴニアに生息する氷河カワゲラの網羅的腸内細菌叢解析}, booktitle = {}, year = 2017, } @inproceedings{CTT100744199, author = {本郷裕一}, title = {1細胞ゲノムとメタゲノムから読み解くシロアリ腸内多重共生系}, booktitle = {}, year = 2017, } @inproceedings{CTT100744198, author = {本郷裕一}, title = {シロアリと腸内微生物の多重共生機構}, booktitle = {}, year = 2017, } @inproceedings{CTT100727044, author = {村上匠 and 瀬川高弘 and 竹内望 and Roman Dial and Pedro Labarca and Gonzalo B. Sepulveda and 幸島司郎 and 本郷裕一}, title = {氷河に特化した無脊椎動物の共生細菌群集構造解析}, booktitle = {}, year = 2016, } @inproceedings{CTT100727038, author = {Yuichi Hongoh}, title = {Tripartite symbiosis within a protist cell in the termite gut}, booktitle = {}, year = 2016, } @inproceedings{CTT100727027, author = {Yuniar Devi Utami and Hirokazu Kuwahara and Kaito Sugaya and Masahiro Yuki and Moriya Ohkuma and Yuichi Hongoh}, title = {Uncovering rare candidate bacterial phylum TG2 in the termite gut}, booktitle = {}, year = 2016, } @inproceedings{CTT100727039, author = {伊澤和輝 and 名倉有一 and Nathan Lo and 大熊盛也 and 本郷裕一}, title = {シロアリ腸内原生生物の細胞表面に共生する新規Endomicrobium属細菌}, booktitle = {}, year = 2016, } @inproceedings{CTT100727040, author = {桑原宏和 and 雪真弘 and 伊澤和輝 and 大熊盛也 and 本郷裕一}, title = {シロアリ腸内原生生物に共生するDesulfovibrio属細菌のゲノム解析による3者間共生システムの解明}, booktitle = {}, year = 2016, } @inproceedings{CTT100717634, author = {本郷裕一}, title = {シロアリ腸内多重共生系の進化}, booktitle = {}, year = 2016, } @inproceedings{CTT100727030, author = {伊澤和輝 and 麥島雄太 and 桑原宏和 and 河合幹彦 and 木原久美子 and Nathan Lo and 雪真弘 and 伊藤武彦 and 大熊盛也 and 本郷裕一}, title = {対ファージ防衛機構が示すEndomicrobium属細胞内共生細菌の適応進化}, booktitle = {}, year = 2016, } @inproceedings{CTT100717633, author = {本郷裕一}, title = {シロアリと絶対共生する腸内微生物群集の進化と機能}, booktitle = {}, year = 2016, } @inproceedings{CTT100717632, author = {本郷裕一}, title = {ゲノムから読み解くシロアリ腸内難培養微生物群集の多重共生機構}, booktitle = {}, year = 2016, } @inproceedings{CTT100714712, author = {猪飼 桂 and 板倉 学 and 西嶋 傑 and 鶴丸 博人 and 須田亙 and 蔦谷 匠 and 冨塚 江利子 and 田所 聖志 and 馬場 淳 and 小谷 真吾 and 夏原 和美 and 森田 彩子 and 米田穰 and 井上潤一 and 大熊盛也 and 本郷裕一 and 山本 太郎 and シーバ ピーター and 服部正平 and 南澤 究 and 梅崎 昌裕}, title = {ヒト腸内微生物叢における窒素固定活性とnifH遺伝子の多様性}, booktitle = {}, year = 2015, } @inproceedings{CTT100717631, author = {Yuichi Hongoh}, title = {Single cell genomics deciphers the complex symbiotic system in the termite gut microbiota}, booktitle = {}, year = 2015, } @inproceedings{CTT100576781, author = {Yuichi Hongoh}, title = {Genomics of single bacterial species in termite gut}, booktitle = {}, year = 2009, } @inproceedings{CTT100576782, author = {Yuichi Hongoh}, title = {Genome analysis to unveil the symbiotic roles of gut bacteria in termite gut}, booktitle = {}, year = 2008, } @misc{CTT100837315, author = {本郷裕一}, title = {「材食を可能とするシロアリ腸内多重共生機構の解明}, year = 2020, } @misc{CTT100837314, author = {本郷裕一}, title = {「材食を可能とするシロアリ腸内多重共生機構の解明}, year = 2019, } @misc{CTT100780856, author = {Yuichi Hongoh and Moriya Ohkuma}, title = {Termite gut flagellates and their methanogenic and eubacterial symbionts}, year = 2018, } @misc{CTT100780860, author = {本郷裕一}, title = {ゲノム解析によるシロアリ腸内原生生物共生細菌の役割の解明}, year = 2018, } @misc{CTT100780859, author = {本郷裕一}, title = {環境微生物学研究に革命をもたらしたシングルセル解析}, year = 2017, } @misc{CTT100780858, author = {本郷裕一}, title = {難培養性微生物の1細胞ゲノム解析}, year = 2017, } @misc{CTT100717630, author = {本郷裕一}, title = {マトリョーシカ型共生が支えるシロアリの繁栄}, year = 2015, } @misc{CTT100804684, author = {Yuichi Hongoh}, title = {Who digests the lignocellulose?}, year = 2014, } @misc{CTT100805567, author = {本郷裕一}, title = {難培養微生物種のゲノム解析による機能解明と遺伝子資源化 }, year = 2013, } @misc{CTT100804814, author = {Yuichi Hongoh and Toyoda, A.}, title = {Whole-genome sequencing of unculturable bacterium using whole-genome amplification.}, year = 2011, } @misc{CTT100805549, author = {本郷裕一}, title = {シロアリ腸内原生生物と原核生物の細胞共生}, year = 2011, } @misc{CTT100805373, author = {本郷裕一}, title = {難培養性細菌種のゲノム完全長配列取得による機能解明}, year = 2010, } @misc{CTT100614439, author = {Yuichi Hongoh}, title = {Diversity and genomes of uncultured microbial symbionts in the termite gut}, year = 2010, } @misc{CTT100614440, author = {本郷裕一}, title = {Single-cell genomicsへの展望}, year = 2009, } @misc{CTT100585496, author = {大熊盛也 and 本郷裕一}, title = {シロアリ腸内微生物の多重共生}, year = 2009, } @misc{CTT100588949, author = {本郷裕一}, title = {培養できない微生物の機能を探る}, year = 2009, } @misc{CTT100585495, author = {大熊盛也 and 本郷裕一}, title = {動物と窒素固定細菌の共生は成立するか?}, year = 2009, } @misc{CTT100585498, author = {大熊盛也 and 本郷裕一}, title = {難培養微生物のゲノム解析技術とシロアリ腸内微生物の共生機構}, year = 2008, } @misc{CTT100585499, author = {本郷裕一 and 大熊盛也}, title = {ゲノムから解き明かす難培養性細菌の機能}, year = 2008, } @misc{CTT100585497, author = {大熊盛也 and 本郷裕一 and 野田悟子}, title = {シロアリ腸内微生物の多重共生—バイオマス資源を高効率に利用する共生}, year = 2008, } @misc{CTT100585500, author = {本郷裕一 and 大熊盛也}, title = {シロアリ腸内共生微生物群の多様性とゲノム解析}, year = 2008, } @misc{CTT100718754, author = {Yuichi Hongoh}, title = {Studies on nitrogen recycling by fungal endosymbionts of plant hoppers and origin of their symbiosis}, year = 2000, } @phdthesis{CTT100718754, author = {Yuichi Hongoh}, title = {Studies on nitrogen recycling by fungal endosymbionts of plant hoppers and origin of their symbiosis}, school = {東京大学}, year = 2000, }