論文

• Minami Imamoto, Haruna Nakamura, Mitsuto Aibara, Ryo Hatashima, Ismael A Kimirei, Benedicto B Kashindye, Takehiko Itoh, Masato Nikaido. Severe Bottleneck Impacted the Genomic Structure of Egg-Eating Cichlids in Lake Victoria, Molecular Biology and Evolution, 41, 6, June 2024.
• Issei Yahiro, Oga Sato, Sipra Mohapatra, Koki Mukai, Atsushi Toyoda, Takehiko Itoh, Michiya Matsuyama, Tapas Chakraborty, Kohei Ohta. SDF-1/CXCR4 signal is involved in the induction of Primordial Germ Cell migration in a model marine fish, Japanese anchovy (Engraulis japonicus), General and Comparative Endocrinology, May 2024.  公式リンク  
  
• Issei Yahiro, Kyle Dominic Eguid Barnuevo, Oga Sato, Sipra Mohapatra, Atsushi Toyoda, Takehiko Itoh, Kaoru Ohno, Michiya Matsuyama, Tapas Chakraborty, Kohei Ohta. Modeling the SDF-1/CXCR4 protein using advanced artificial intelligence and antagonist screening for Japanese anchovy, Frontiers in Physiology, Feb. 2024.  公式リンク  
  
• Ochiai, K.K., Hanawa, D., Ogawa, H.A., Tanaka, H., Uesaka, K., Edzuka, T., Shirae-Kurabayashi, M., Toyoda, A., Itoh, T., Goshima, G., Takehiko Itoh. Genome sequence and cell biological toolbox of the highly regenerative, coenocytic green feather alga Bryopsis, Plant Journal, 2024.  公式リンク  
  
• Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takahiro Yamabe, Luisa Matiz-Ceron, Takamichi Jogahara, Atsushi Toyoda, Asato Kuroiwa, Takehiko Itoh. Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes, Scientific Data, Dec. 2023.  公式リンク  
  
• Minoru Moriyama, Yudai Nishide, Takema Fukatsu, Minoru Moriyama, Yudai Nishide, Atsushi Toyoda, Takehiko Itoh, Takema Fukatsu. Complete genomes of mutualistic bacterial co-symbionts "Candidatus Sulcia muelleri" and "Candidatus Nasuia deltocephalinicola" of the rice green leafhopper Nephotettix cincticeps, Microbiol Resour Announs, Sept. 2023.
• Issei Nakazato, Miki Okuno, Takehiko Itoh, Nobuhiro Tsutsumi, Shin‐ichi Arimura. Characterization and development of a plastid genome base editor, ptpTALECD, The Plant Journal, Aug. 2023.  公式リンク  
  
• Kohei Nagao, Yoshiki Tanaka, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Souichirou Kubota, Yuji Goto. Bioinformatic and fine-scale chromosomal mapping reveal the nature and evolution of eliminated chromosomes in the Japanese hagfish, Eptatretus burgeri, through analysis of repetitive DNA families, PLoS One, Aug. 2023.
• Takeaki Taniguchi, Miki Okuno, Takahiro Shinoda, Fumiya Kobayashi, Kazuki Takahashi, Hideaki Yuasa, Yuta Nakamura, Hiroyuki Tanaka, Rei Kajitani, Takehiko Itoh. GINGER: an integrated method for high-accuracy prediction of gene structure in higher eukaryotes at the gene and exon level, DNA Research, Aug. 2023.  公式リンク  
  
• Takahiro Yamabe, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh. Chromosomal-level genome assembly of the coffee bee hawk moth reveals the evolution of chromosomes and the molecular basis of distinct phenotypes, Genome Biology and Evolution, evad141, July 2023.
• Shun Ouchi, Rei Kajitani, Takehiko Itoh. GreenHill: a de novo chromosome‑level scaffolding and phasing tool using Hi‑C, Genome Biology, 24, 162 (2023), July 2023.
• Hiroyuki Tanaka, Tatsuki Hori, Shohei Yamamoto, Atsushi Toyoda, Kentaro Yano, Kyoko Yamane, Takehiko Itoh. Haplotype-resolved chromosomallevel assembly of wasabi (Eutrema japonicum) genome, Scientific Data, (2023)10, 441, July 2023.
• Tatsuya Miyata, Itsuki Taniguchi, Keiji Nakamura, Yasuhiro Gotoh, Dai Yoshimura, Takehiko Itoh, Shinichiro Hirai, Eiji Yokoyama, Makoto Ohnishi, Sunao Iyoda, Yoshitoshi Ogura, Tetsuya Hayashi. Alteration of a Shiga toxin-encoding phage associated with a change in toxin production level and disease severity in Escherichia coli, Microbial Genomics, Feb. 2023.  公式リンク  
  
• Jia Hui Wan, Lee-Mei Ng, Soon Zher Neoh, Rei Kajitani, Takehiko Itoh, Susumu Kajiwara, Kumar Sudesh. Complete genome sequence of Aquitalea pelogenes USM4 (JCM19919), a polyhydroxyalkanoate producer, Archives of Microbiology, Feb. 2023.  公式リンク  
  
• Miho Terao, Yuya Ogawa, Shuji Takada, Rei Kajitani, Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takehiko Itoh, Atsushi Toyoda, Tomohiro Kono, Takamichi Jogahara, Shusei Mizushima, Asato Kuroiwa. Turnover of mammal sex chromosomes in the Sry -deficient Amami spiny rat is due to male-specific upregulation of Sox9, Proceedings of the National Academy of Sciences, Dec. 2022.  公式リンク  
  
• Masa-aki Yoshida, Kazuki Hirota, Junichi Imoto, Miki Okuno, Hiroyuki Tanaka, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Kazuho Ikeo, Takenori Sasaki, Davin H E Setiamarga, Laura Katz. Gene Recruitments and Dismissals in the Argonaut Genome Provide Insights into Pelagic Lifestyle Adaptation and Shell-like Eggcase Reacquisition, Genome Biology and Evolution, Nov. 2022.  公式リンク  
  
• Shinya Komata, Rei Kajitani, Takehiko Itoh, Haruhiko Fujiwara. Genomic architecture and functional unit of mimicry supergene in female limited Batesian mimic Papilio butterflies, Philosophical Transactions of the Royal Society B: Biological Sciences, Aug. 2022.  公式リンク  
  
• Yasuhiko Chikami, Miki Okuno, Atsushi Toyoda, Takehiko Itoh, Teruyuki Niimi, John True. Evolutionary History of Sexual Differentiation Mechanism in Insects, Molecular Biology and Evolution, July 2022.  公式リンク  
  
• Takumi Kamiyama, Yuko Shimada-Niwa, Hiroyuki Tanaka, Minami Katayama, Takayoshi Kuwabara, Hitoha Mori, Akari Kunihisa, Takehiko Itoh, Atsushi Toyoda, Ryusuke Niwa. Whole-genome sequencing analysis and protocol for RNA interference of the endoparasitoid wasp Asobara japonica, DNA Research, June 2022.  公式リンク  
  
• Masatoshi Miyakoshi, Haruna Okayama, Maxence Lejars, Takeshi Kanda, Yuki Tanaka, Kaori Itaya, Miki Okuno, Takehiko Itoh, Noritaka Iwai, Masaaki Wachi. Mining RNA-seq data reveals the massive regulon of GcvB small RNA and its physiological significance in maintaining amino acid homeostasis in Escherichia coli, Mol. Microbiol., vol. 117, no. 1, pp. 160-178, Jan. 2022.
• Mizuki Horoiwa, Takashi Nakamura, Hideaki Yuasa, Rei Kajitani, Yosuke Ameda, Tetsuro Sasaki, Hiroki Taninaka, Taisei Kikuchi, Takehisa Yamakita, Toyoda Atsushi, Takehiko Itoh, Nina Yasuda. Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions, Frontiers in Marine Science, Vol. 8, Jan. 2022.  公式リンク  
  
• Ruriko Nishida, Keiji Nakamura, Itsuki Taniguchi, Kazunori Murase, Tadasuke Ooka, Yoshitoshi Ogura, Yasuhiro Gotoh, Takehiko Itoh, Atsushi Toyoda, Jacques Georges Mainil, Denis Piérard, Kazuko Seto, Tetsuya Harada, Junko Isobe, Keiko Kimata, Yoshiki Etoh, Mitsuhiro Hamasaki, Hiroshi Narimatsu, Jun Yatsuyanagi, Mitsuhiro Kameyama, Yuko Matsumoto, Yuhki Nagai, Jun Kawase, Eiji Yokoyama, Kazuhiko Ishikawa, Takayuki Shiomoto, Kenichi Lee, Dongchon Kang, Koichi Akashi, Makoto Ohnishi, Sunao Iyoda, Tetsuya Hayashi. The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing Escherichia coli O121:H19, Microbial Genomics, Dec. 2021.  公式リンク  
  
• Maierdan Palihati, Hideo Tsubouchi, Bilge Argunhan, Rei Kajitani, Omirgul Bakenova, Yong‑Woon Han, Yasuto Murayama, Takehiko Itoh, Hiroshi Iwasaki. Homology length dictates the requirement for Rad51 and Rad52 in gene targeting in the Basidiomycota yeast Naganishia liquefaciens, Current Genetics, Springer, Vol. 67, no. 6, pp. 919-936, Dec. 2021.  公式リンク  
  
• Miki Okuno, Shusei Mizushima, Asato Kuroiwa, Takehiko Itoh, Judith Mank. Analysis of Sex Chromosome Evolution in the Clade Palaeognathae from Phased Genome Assembly, Genome Biology and Evolution, Nov. 2021.  公式リンク  
  
• Michiharu Nakano, Hideki Hirakawa, Eigo Fukai, Atsushi Toyoda, Rei Kajitani, Yohei Minakuchi, Takehiko Itoh, Yohei Higuchi, Toshiaki Kozuka, Hidemasa Bono, Kenta Shirasawa, Ippei Shiraiwa, Katsuhiko Sumitomo, Tamotsu Hisamatsu, Michio Shibata, Sachiko Isobe, Kenji Taniguchi, Makoto Kusaba. A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum, Communications Biology, 4, 1, 1167, Oct. 2021.
• Rei Kajitani, Hideki Noguchi, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Miki Okuno, Atsushi Toyoda, Tomomi Kuwahara, Tetsuya Hayashi, Takehiko Itoh. MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features, Nucleic Acids Research, gkab831, Sept. 2021.
• Hideaki Yuasa, Rei Kajitani, Yuta Nakamura, Kazuki Takahashi, Miki Okuno, Fumiya Kobayashi, Takahiro Shinoda, Atsushi Toyoda, Yutaka Suzuki, Nalinee Thongtham, Zac Forsman, Omri Bronstein, Davide Seveso, Enrico Montalbetti, Coralie Taquet, Gal Eyal, Nina Yasuda, Takehiko Itoh. Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis, DNA Research, 28, 4, dsab012, Aug. 2021.
• Issei Nakazato, Miki Okuno, Hiroshi Yamamoto, Yoshiko Tamura, Takehiko Itoh, Toshiharu Shikanai, Hideki Takanashi, Nobuhiro Tsutsumi, Shin-Ichi Arimura. Targeted base editing in the plastid genome of Arabidopsis thaliana, Nature plants, vol. 7, no. 7, 906-913, July 2021.
• Yukako Katsura, Toshimichi Ikemura, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Mitsuaki Ogata, Ikuo Miura, Kennosuke Wada, Yoshiko Wada, Yoko Satta. Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency, Life Science Alliance, May 2021.  公式リンク  
  
• Koji Inoue, Yuki Yoshioka, Hiroyuki Tanaka, Azusa Kinjo, Mieko Sassa, Ikuo Ueda, Chuya Shinzato, Atsushi Toyoda, Takehiko Itoh. Genomics and Transcriptomics of the green mussel explain the durability of its byssus, Scientific Reports, Vol. 11, No. 1, 5992, Mar. 2021.
• Nakamura, H., Aibara, M., Kajitani, R., Mrosso, HDJ, Mzighani, SI, Toyoda, A., Itoh, T., Okada, N., Nikaido, M. Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation, Molecular Biology and Evolution, Mar. 2021.  公式リンク  
  
• Kyoko Ishino, Hidetoshi Hasuwa, Jun Yoshimura, Yuka W Iwasaki, Hidenori Nishihara, Naomi M Seki, Takamasa Hirano, Marie Tsuchiya, Hinako Ishizaki, Harumi Masuda, Tae Kuramoto, Kuniaki Saito, Yasubumi Sakakibara, Atsushi Toyoda, Takehiko Itoh, Mikiko C Siomi, Shinichi Morishita, Haruhiko Siomi. Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation, Nucleic Acids Research, Vol. 49, No. 5, pp. 2700–2720, Feb. 2021.
• Hirota, K., Yoshida, M.-A., Itoh, T., Toyoda, A., Setiamarga, D.H.E., Takehiko Itoh. The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes, Mitochondrial DNA Part B: Resources, Vol. 6, No. 4, pp. 1451-1453, 2021.  公式リンク  
  
• Hirakawa, H., Toyoda, A., Itoh, T., Suzuki, Y., Nagano, A.J., Sugiyama, S., Onodera, Y., Takehiko Itoh. A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits, DNA Research, Vol. 28, No. 3, pp. 1-10, 2021.  公式リンク  
  
• Shiimori, M., Ichida, Y., Nukiwa, R., Sakuma, T., Abe, H., Kajitani, R., Fujino, Y., Kikuchi, A., Kawamura, T., Kodama, T., Toyooka, S., Shirahige, K., Schotta, G., Kuba, K., Itoh, T., Imai, Y., Takehiko Itoh. Suv4-20h2 protects against influenza virus infection by suppression of chromatin loop formation, iScience, Vol. 24, No. 6, 2021.  公式リンク  
  
• Ylla, G., Nakamura, T., Itoh, T., Kajitani, R., Toyoda, A., Tomonari, S., Bando, T., Ishimaru, Y., Watanabe, T., Fuketa, M., Matsuoka, Y., Barnett, A.A., Noji, S., Mito, T., Extavour, C.G., Takehiko Itoh. Insights into the genomic evolution of insects from cricket genomes, Communications Biology, Vol. 4, No. 1, 2021.  公式リンク  
  
• Katsura, Y., Ikemura, T., Kajitani, R., Toyoda, A., Itoh, T., Ogata, M., Miura, I., Wada, K., Wada, Y., Satta, Y., Takehiko Itoh. Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency, Life Science Alliance, Vol. 4, No. 5, 2021.  公式リンク  
  
• Shin-ichi Arimura, Hiroki Ayabe, Hajime Sugaya, Miki Okuno, Yoshiko Tamura, Yu Tsuruta, Yuta Watari, Shungo Yanase, Takaki Yamauchi, Takehiko Itoh, Atsushi Toyoda, Hideki Takanashi, Nobuhiro Tsutsumi. Targeted gene disruption of ATP synthases 6-1 and 6-2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs, The Plant Journal, Vol. 104, No. 6, 1459-1471, Nov. 2020.
• Yong-Woon Han, Rei Kajitani, Hiroya Morimoto, Maierdan Palihati, Yumiko Kurokawa, Rie Ryusui, Bilge Argunhan, Hideo Tsubouchi, Fumiyoshi Abe, Susumu Kajiwara, Hiroshi Iwasaki, Takehiko Itoh. Draft Genome Sequence of Naganishia liquefaciens Strain N6, Isolated from the Japan Trench., Microbiology Resource Announcements, American Society for Microbiology, Vol. 9, Issue 47, e00827-20, Nov. 2020.
• Miki Okuno, Shuntaro Miyamoto, Takehiko Itoh, Masahide Seki, Yutaka Suzuki, Shusei Mizushima, Asato Kuroiwa. A Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica., Scientific Reports, Vol. 10, No. 1, 20073, Nov. 2020.
• Naohisa Wada, Hideaki Yuasa, Rei Kajitani, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Atsushi Toyoda, Sen-Lin Tang, Yukihiro Higashimura, Hugh Sweatman, Zac Forsman, Omri Bronstein, Gal Eyal, Nalinee Thongtham, Takehiko Itoh, Tetsuya Hayashi, Nina Yasuda. A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of thorns starfish, in the Indo-Pacifc, Microbiome, Vol. 8, No. 1, 123, Aug. 2020.
• Kai Wang, Ryo Tomura, Wei Chen, Miho Kiyooka, Hinako Ishizaki, Tomoyuki Aizu, Yohei Minakuchi, Masahide Seki, Yutaka Suzuki, Tatsuya Omotezako, Ritsuko Suyama, Aki Masunaga, Charles Plessy, Nicholas M. Luscombe, Christelle Dantec, Patrick Lemaire, Takehiko Itoh, Atsushi Toyoda, Hiroki Nishida, Takeshi A. Onuma. A genome database for a Japanese population of the larvacean Oikopleura dioica, Development Growth & Differentiation, Vol. 62, No. 6, 450-461, Aug. 2020.
• Takeuchi M., Kuwahara H., Murakami T., Takahashi K., Kajitani R., Toyoda A., Itoh T., Ohkuma M., Hongoh Y. Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut, The ISME Journal, Vol. 14, pp. 2288–2301, June 2020.
• Rei Kajitani, Dai Yoshimura, Yoshitoshi Ogura, Yasuhiro Gotoh, Tetsuya Hayashi, Takehiko Itoh. Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error- removal process, DNA Research, 27, 3, June 2020.
• Keiji Nakamura, Kazunori Murase, Mitsuhiko P. Sato, Atsushi Toyoda, Takehiko Itoh, Jacques Georges Mainil, Denis Piérard, Shuji Yoshino, Keiko Kimata, Junko Isobe, Kazuko Seto, Yoshiki Etoh, Hiroshi Narimatsu, Shioko Saito, Jun Yatsuyanagi, Kenichi Lee, Sunao Iyoda, Makoto Ohnishi, Tadasuke Ooka, Yasuhiro Gotoh, Yoshitoshi Ogura, Tetsuya Hayashi. Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28, Microbial Genomics, Vol. 6, No. 1, e000323, Jan. 2020.
• Mitsuhiko P. Sato, Yoshitoshi Ogura, Keiji Nakamura, Ruriko Nishida, Yasuhiro Gotoh, Masahiro Hayashi, Junzo Hisatsune, Motoyuki Sugai, Itoh Takehiko, Tetsuya Hayashi. Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes, DNA Research, Vol. 26, No. 5, 391-398, Oct. 2019.
• Takayuki Enomoto, Hidefumi Nishida, Tetsuo Iwata, Akito Fujita, Kanako Nakayama, Takahiro Kashiwagi, Yasue Hatanaka, Hiro Kondo, Rei Kajitani, Takehiko Itoh, Makoto Ohmoto, Ichiro Matsumoto, Junji Hirota. Bcl11b controls the odorant receptor class choice in mice, Communications Biology, Springer Nature, 2, 1, 296, Aug. 2019.
• Tomohiko Kazama, Miki Okuno, Yuta Watari, Shungo Yanase, Chie Koizuka, Yu Tsuruta, Hajime Sugaya, Atsushi Toyoda, Takehiko Itoh, Nobuhiro Tsutsumi, Kinya Toriyama, Nobuya Koizuka, Shin-ichi Arimura. Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing, Nature Plants, Vol. 5, No. 7, 722-730, July 2019.
• Dai Yoshimura, Rei Kajitani, Yasuhiro Gotoh, Katsuyuki Katahira, Miki Okuno, Yoshitoshi Ogura, Tetsuya Hayashi, Takehiko Itoh. Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP, Microbial Genomics, e000261, May 2019.
• Rei Kajitani, Dai Yoshimura, Miki Okuno, Yohei Minakuchi, Hiroshi Kagoshima, Asao Fujiyama, Kaoru Kubokawa, Yuji Kohara, Atsushi Toyoda, Takehiko Itoh. Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions, Nature Communications, 1702, Apr. 2019.
• Osamu Sawada, Yasuhiro Gotoh, Takako Taniguchi, Shota Furukawa, Dai Yoshimura, Satomi Sasaki, Haruki Shida, Yoshihiro Kusunoki, Tsuyoshi Yamamura, Ken Furuya, Takehiko Itoh, Tetsuya Horita, Tetsuya Hayashi, Naoaki Misawa. Genome Sequencing Verifies Relapsed Infection of Helicobacter cinaedi, Open Forum Infectious Diseases, Vol. 6, No. 5, Apr. 2019.
• Takehiko Itoh. Multi-step genomic dissection of a suspected intra-hospital Helicobacter cinaedi outbreak, Microbial Genomics, Vol. 5, No. 1, Jan. 2019.  公式リンク  
  
• Kohei Nishimura, Masataka Komiya, Tetsuya Hori, Takehiko Itoh, Tatsuo Fukagawa. 3D genomic architecture reveals that neocentromeres associate with heterochromatin regions, J Cell Biol, Rockefeller University Press, Vol. 218, No. 1, 134-149, Jan. 2019.
• Enomoto, T., Nishida, H., Iwata, T., Fujita, A., Nakayama, K., Kashiwagi, T., Hatanaka, Y., Kondo, H., Kajitani, R., Itoh, T., Ohmoto, M., Matsumoto, I., Hirota, J., Takehiko Itoh. Author Correction: Bcl11b controls odorant receptor class choice in mice (Communications Biology, (2019), 2, 1, (296), 10.1038/s42003-019-0536-x), Communications Biology, Vol. 2, No. 1, 2019.  公式リンク  
  
• Yoshitoshi Ogura, Kazuko Seto, Yo Morimoto, Keiji Nakamura, Mitsuhiko P. Sato, Yasuhiro Gotoh, Takehiko Itoh, Atsushi Toyoda, Makoto Ohnishi, Tetsuya Hayashi. Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a, Emerging infectious diseases, Centers for Disease Control and Prevention, Vol. 24, No. 12, 2219-2227, Dec. 2018.
• Hikoyuu Suzuki, Hidefumi Nishida, Hiro Kondo, Ryota Yoda, Tetsuo Iwata, Kanako Nakayama, Takayuki Enomoto, Jiaqi Wu, Keiko Moriya-Ito, Masao Miyazaki, Yoshihiro Wakabayashi, Takushi Kishida, Masataka Okabe, Yutaka Suzuki, Takehiko Itoh, Junji Hirota, Masato Nikaido. A Single Pheromone Receptor Gene Conserved across 400 My of Vertebrate Evolution, Molecular biology and evolution, Oxford University Press, Vol. 35, No. 12, 2928-2939, Sept. 2018.
• Toshiya Ando, Takeshi Matsuda, Kumiko Goto, Kimiko Hara, Akinori Ito, Junya Hirata, Joichiro Yatomi, Rei Kajitani, Miki Okuno, Katsushi Yamaguchi, Masaaki Kobayashi, Tomoyuki Takano, Yohei Minakuchi, Masahide Seki, Yutaka Suzuki, Kentaro Yano, Takehiko Itoh, Shuji Shigenobu, Atsushi Toyoda, Teruyuki Niimi. Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles, Nature communications, Nature Publishing Group, Vol. 9, No. 1, 3843, Sept. 2018.
• Asuka Morikawa, Tomoatsu Hayashi, Mana Kobayashi, Yuki Kato, Katsuhiko Shirahige, Takehiko Itoh, Mitsuyoshi Urashima, Aikou Okamoto, Tetsu Akiyama. Somatic copy number alterations have prognostic impact in patients with ovarian clear cell carcinoma, Oncology reports, Spandidos Publications, Vol. 40, No. 1, 309-318, June 2018.
• Takuro Iijima, Rei Kajitani, Shinya Komata, Chung-Ping Lin, Teiji Sota, Takehiko Itoh, Haruhiko Fujiwara. Parallel evolution of Batesian mimicry supergene in two Papilio butterflies, P. polytes and P. memnon, Science advances, American Association for the Advancement of Science, eaao5416, Apr. 2018.
• Makoto KONISHI, Norihisa SHINDO, Masataka KOMIYA, Kozo TANAKA, Takehiko ITOH, Toru HIROTA. Quantitative analyses of the metaphase-to-anaphase transition reveal differential kinetic regulation for securin and cyclin B1, Biomedical Research, Biomedical Research Press, Vol. 39, No. 2, 75-85, 2018.
• Yoshitoshi Ogura, Yasuhiro Gotoh, Takehiko Itoh, Mitsuhiko P. Sato, Kazuko Seto, Shyuji Yoshino, Junko Isobe, Yoshiki Etoh, Mariko Kurogi, Keiko Kimata, Eriko Maeda, Denis Pierard, Masahiro Kusumoto, Masato Akiba, Kiyoshi Tominaga, Yumi Kirino, Yuki Kato, Katsuhiko Shirahige, Tadasuke Ooka, Nozomi Ishijima, Ken-ichi Lee, Sunao Iyoda, Jacques Georges Mainil, Tetsuya Hayashi. Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages, Microbial genomics, Microbiology Society, Vol. 39, No. 11, Nov. 2017.
• Ajeng Pramono, Hirokazu Kuwahara, Takehiko Itoh, Toyoda Atsushi, Akinori Yamada, Hongoh Y. Discovery and complete genome sequence of a bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut, Microbes and environments, June 2017.  公式リンク  
  
• Masahito Hayatsu, Kanako Tago, Ikuo Uchiyama, Atsushi Toyoda, Yong Wang, Yumi Shimomura, Takashi Okubo, Futoshi Kurisu, Yuhei Hirono, Kunihiko Nonaka, Hiroko Akiyama, Takehiko Itoh, Hideto Takami. An acid-tolerant ammonia-oxidizing gamma-proteobacterium from soil, Isme Journal, Vol. 11, No. 5, pp. 1130-1141, May 2017.  公式リンク  
  
• Hideto Takami, Atsushi Toyoda, Ikuo Uchiyama, Takehiko Itoh, Yoshihiro Takaki, Wataru Arai, Shinro Nishi, Mikihiko Kawai, Kazuo Shin-ya, Haruo Ikeda. Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1, DNA Research, Vol. 24, No. 2, pp. 169-177, Apr. 2017.  公式リンク  
  
• Arzuba Akter, Tadasuke Ooka, Yasuhiro Gotoh, Seigo Yamamoto, Hiromi Fujita, Fumio Terasoma, Kouji Kida, Masakatsu Taira, Fumiko Nakadouzono, Mutsuyo Gokuden, Manabu Hirano, Mamoru Miyashiro, Kouichi Inari, Yukie Shimazu, Kenji Tabara, Atsushi Toyoda, Dai Yoshimura, Takehiko Itoh, Tomokazu Kitano, Mitsuhiko P. Sato, Keisuke Katsura, Shakhinur Islam Mondal, Yoshitoshi Ogura, Shuji Ando, Tetsuya Hayashi. Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan, Genome Biology and Evolution, Vol. 9, No. 1, pp. 124-133, Jan. 2017.  公式リンク  
  
• Masahiro Chatani, Hiroya Morimoto, Kazuhiro Takeyama, Akiko Mantoku, Naoki Tanigawa, Kubota Koji, Hiromi Suzuki, Satoko Uchida, Fumiaki Tanigaki, Masaki Shirakawa, Oleg Gusev, Vladimir Sychev, Yoshiro Takano, Takehiko Itoh, Akira Kudo. Acute transcriptional up-regulation specific to osteoblasts/osteoclasts in medaka fish immediately after exposure to microgravity, Scientific Reports, Vol. 6, Dec. 2016.  公式リンク  
  
• Atsushi Hoshino, Vasanthan Jayakumar, Eiji Nitasaka, Atsushi Toyoda, Hideki Noguchi, Takehiko Itoh, Tadasu Shin-I, Yohei Minakuchi, Yuki Koda, Atsushi J. Nagano, Masaki Yasugi, Mie N. Honjo, Hiroshi Kudoh, Motoaki Seki, Asako Kamiya, Toshiyuki Shiraki, Piero Carninci, Erika Asamizu, Hiroyo Nishide, Sachiko Tanaka, Kyeung-Il Park, Yasumasa Morita, Kohei Yokoyama, Ikuo Uchiyama, Yoshikazu Tanaka, Satoshi Tabata, Kazuo Shinozaki, Yoshihide Hayashizaki, Yuji Kohara, Yutaka Suzuki, Sumio Sugano, Asao Fujiyama, Shigeru Iida, Yasubumi Sakakibara. Genome sequence and analysis of the Japanese morning glory Ipomoea nil, Nature Communications, Vol. 7, Nov. 2016.  公式リンク  
  
• Kazuki Izawa, Hirokazu Kuwahara, Kumiko Kihara, Masahiro Yuki, Nathan Lo, Takehiko Itoh, Moriya Ohkuma, Yuichi Hongoh. Comparison of Intracellular "Ca. Endomicrobium Trichonymphae" Genomovars Illuminates the Requirement and Decay of Defense Systems against Foreign DNA, Genome biology and evolution, Oxford University Press, Vol. 8, No. 10, 3099-3107, Oct. 2016.
• Vicky L Hunt, Isheng J Tsai, Avril Coghlan, Adam J Reid, Nancy Holroyd, Bernardo J Foth, Alan Tracey, James A Cotton, Eleanor J Stanley, Helen Beasley, Hayley M Bennett, Karen Brooks, Bhavana Harsha, Rei Kajitani, Arpita Kulkarni, Dorothee Harbecke, Eiji Nagayasu, Sarah Nichol, Yoshitoshi Ogura, Michael A Quail, Nadine Randle, Dong Xia, Norbert W Brattig, Hanns Soblik, Diogo M Ribeiro, Alejandro Sanchez-Flores, Tetsuya Hayashi, Takehiko Itoh, Dee R Denver, Warwick Grant, Jonathan D Stoltzfus, James B Lok, Haruhiko Murayama, Jonathan Wastling, Adrian Streit, Taisei Kikuchi, Mark Viney, Matthew Berriman. The genomic basis of parasitism in the Strongyloides Glade of nematodes, Nature Genetics, Vol. 48, No. 3, pp. 299-307, Mar. 2016.  公式リンク  
  
• Miki Okuno, Rei Kajitani, Rie Ryusui, Hiroya Morimoto, Yukiko Kodama, Takehiko Itoh. Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization, DNA Research, Vol. 23, No. 1, pp. 67-80, Feb. 2016.  公式リンク  
  
• Mariko Naito, Yoshitoshi Ogura, Takehiko Itoh, Mikio Shoji, Masaaki Okamoto, Tetsuya Hayashi, Koji Nakayama. The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat, DNA Research, Vol. 23, No. 1, pp. 11-19, Feb. 2016.  公式リンク  
  
• Hayashi Yamamoto, Takayuki Shima, Masaya Yamaguchi, Yuh Mochizuki, Hisashi Hoshida, Soichiro Kakuta, Chika Kondo-Kakuta, Nobuo N. Noda, Fuyuhiko Inagaki, Takehiko Itoh, Rinji Akada, Yoshinori Ohsumi. The Thermotolerant Yeast Kluyveromyces marxianus Is a Useful Organism for Structural and Biochemical Studies of Autophagy, Journal of Biological Chemistry, Vol. 290, No. 49, pp. 29506–29518, Dec. 2015.  公式リンク  
  
• Daijiro Konno, Takeya Kasukawa, Kosuke Hashimoto, Takehiko Itoh, Taeko Suetsugu, Ikuo Miura, Shigeharu Wakana, Piero Carninci, Fumio Matsuzaki. STAP cells are derived from ES cells, Nature, Vol. 525, No. 7570, pp. E4-+, Sept. 2015.  公式リンク  
  
• Hideki Nishikawa, Takuro Iijima, Rei Kajitani, Junichi Yamaguchi, Toshiya Ando, Yutaka Suzuki, Sumio Sugano, Asao Fujiyama, Shunichi Kosugi, Hideki Hirakawa, Satoshi Tabata, Katsuhisa Ozaki, Hiroya Morimoto, Kunio Ihara, Madoka Obara, Hiroshi Hori, Takehiko Itoh, Haruhiko Fujiwara. A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly, Nature Genetics, Vol. 47, No. 4, pp. 405-409, Apr. 2015.  公式リンク  
  
• Hideko Urushihara, Hidekazu Kuwayama, Kensuke Fukuhara, Takehiko Itoh, Hiroshi Kagoshima, Tadasu Shin-I, Atsushi Toyoda, Kazuyo Ohishi, Tateaki Taniguchi, Hideki Noguchi, Yoko Kuroki, Takashi Hata, Kyoko Uchi, Kurato Mohri, Jason S King, Robert H Insall, Yuji Kohara, Asao Fujiyama. Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation, Bmc Genomics, Vol. 16, Feb. 2015.  公式リンク  
  
• Rei Kajitani, Kouta Toshimoto, Hideki Noguchi, Atsushi Toyoda, Yoshitoshi Ogura, Miki Okuno, Mitsuru Yabana, Masayuki Harada, Eiji Nagayasu, Haruhiko Maruyama, Yuji Kohara, Asao Fujiyama, Tetsuya Hayashi, Takehiko Itoh. Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads, Genome Research, Vol. 24, No. 8, pp. 1384-1395, Aug. 2014.  公式リンク  
  
• Natsuno Suda, Takehiko Itoh, Ryuichiro Nakato, Daisuke Shirakawa, Masashige Bando, Yuki Katou, Kohsuke Kataoka, Katsuhiko Shirahige, Cheryll Tickle, Mikiko Tanaka. Dimeric combinations of MafB, cFos and cJun control the apoptosis-survival balance in limb morphogenesis, Development, Vol. 141, No. 14, pp. 2885-2894, Mar. 2014.  公式リンク  
  
• Mikihiko Kawai, Taiki Futagami, Atsushi Toyoda, Yoshihiro Takaki, Shinro Nishi, Sayaka Hori, Wataru Arai, Taishi Tsubouchi, Yuki Morono, Ikuo Uchiyama, Takehiko Itoh, Asao Fujiyama, Fumio Inagaki, Hideto Takami. High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes, Frontiers in Microbiology, Vol. 5, Mar. 2014.  公式リンク  
  
• Yukako Hattori, Tadao Usui, Daisuke Satoh, Sanefumi Moriyama, Kohei Shimono, Takehiko Itoh, Katsuhiko Shirahige, Tadashi Uemura. Sensory-Neuron Subtype-Specific Transcriptional Programs Controlling Dendrite Morphogenesis: Genome-wide Analysis of Abrupt and Knot/Collier, Developmental Cell, Vol. 27, No. 5, pp. 530-544, Dec. 2013.  公式リンク  
  
• Ryuichiro Nakato, Takehiko Itoh, Katsuhiko Shirahige. DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data, Genes To Cells, Vol. 18, No. 7, pp. 589-601, July 2013.  公式リンク  
  
• Eiji Nagayasu, Yoshitoshi Ogura, Takehiko Itoh, Ayako Yoshida, Gunimala Chakraborty, Tetsuya Hayashi, Haruhiko Maruyama. Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis, Parasitology International, Vol. 62, No. 1, pp. 57-65, 2013.  公式リンク  
  
• Giacomo De Piccoli, Yuki Katou, Takehiko Itoh, Ryuichiro Nakato, Katsuhiko Shirahige, Karim Labib. Replisome Stability at Defective DNA Replication Forks Is Independent of S Phase Checkpoint Kinases, Molecular Cell, Vol. 45, No. 5, pp. 696-704, Mar. 2012.  公式リンク  
  
• Hideto Takami, Hideki Noguchi, Yoshihiro Takaki, Ikuo Uchiyama, Atsushi Toyoda, Shinro Nishi, Gab-Joo Chee, Wataru Arai, Takuro Nunoura, Takehiko Itoh, Masahira Hattori, Ken Takai. A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem, Plos One, Vol. 7, No. 1, Jan. 2012.  公式リンク  
  
• Matthew A. Deardorff, Masashige Bando, Ryuichiro Nakato, Erwan Watrin, Takehiko Itoh, Masashi Minamino, Katsuya Saitoh, Makiko Komata, Yuki Katou, Dinah Clar1, Kathryn E. Cole, Elfride De Baere, Christophe Decroos, Nataliya Di Donato, Sarah Ernst, Lauren J. Francey, Yolanda Gyftodimou, Kyotaro Hirashima, Melanie Hullings1, Yuuichi Ishikawa, Christian Jaulin, Maninder Kaur, Tohru Kiyono, Patrick M. Lombardi6, Laura Magnaghi-Jaulin4, Geert R. Mortier, Naohito Nozaki, Michael B. Petersen, Hiroyuki Seimiya, Victoria M. Siu, Yutaka Suzuki, Kentaro Takagaki, Jonathan J. Wilde, Patrick J. Willems, Claude Prigent, Gabriele Gillessen-Kaesbach, David W. Christianson, Frank J. Kaiser, Laird G. Jackson, Toru Hirota, Ian D. Krantz, Katsuhiko Shirahige. HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle, Nature, Vol. 489, No. 7415, pp. 313-+, 2012.  公式リンク  
  
• Mainil JG, Bardiau M, Ooka T, Ogura Y, Murase K, Etoh Y, Ichihara S, Horikawa K, Buvens G, Piérard D, Itoh T, Hayashi T.. Typing of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle with IS621 multiplex PCR-based fingerprinting, Journal of Applied Microbiology, Vol. 111, No. 3, pp. 773-786, Sept. 2011.  公式リンク  
  
• Tomomi Kuwahara, Yositoshi Ogura, Kenshiro Oshima, Ken Kurokawa, Tadasuke Ooka, Hideki Hirakawa, Takehiko Itoh, Haruyuki Nakayama-Imaohji, Minoru Ichimura, Kikuji Itoh, Chieko Ishifune, Yoichi Maekawa, Koji Yasutomo, Masahira Hattori, Tetsuya Hayashi. The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing, DNA Research, Vol. 18, No. 4, pp. 291-303, July 2011.  公式リンク  
  
• Atsushi Sato, Kenshiro Oshima, Hideki Noguchi, Masahiro Ogawa, Tadashi Takahashi, Tetsuya Oguma, Yasuji Koyama, Takehiko Itoh, Masahira Hattori, Yoshiki Hanya. Draft Genome Sequencing and Comparative Analysis of Aspergillus sojae NBRC4239, DNA Research, Vol. 18, No. 3, pp. 165-176, Apr. 2011.  公式リンク  
  
• Andreas Kegel, Hanna Betts-Lindroos, Takaharu Kanno, Kristian Jeppsson, Lena Strom, Yuki Katou, Takehiko Itoh, Katsuhiko Shirahige, Camilla Sjogren. Chromosome length influences replication-induced topological stress, Nature, Vol. 471, No. 7338, pp. 392-397, Mar. 2011.  公式リンク  
  
• Hugo Maruyama, Minsang Shin, Toshiyuki Oda, Rie Matsumi, Ryosuke L. Ohniwa, Takehiko Itoh, Katsuhiko Shirahige, Tadayuki Imanaka, Haruyuki Atomi, Shige H. Yoshimura, Kunio Takeyasu. Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis, Molecular Biology of the Cell, Vol. 22, No. 3, pp. 386-398, Feb. 2011.  公式リンク  
  
• Bin Hu, Takehiko Itoh, Ajay Mishra, Yuki Katoh, Kok-Lung Chan, William Upcher, Camilla Godlee, Maurici B. Roig, Katsuhiko Shirahige, Kim Nasmyth. ATP Hydrolysis Is Required for Relocating Cohesin from Sites Occupied by Its Scc2/4 Loading Complex, Current Biology, Vol. 21, No. 1, pp. 12-24, Jan. 2011.  公式リンク  
  
• Alexander Kurze, Katharine A Michie, Sarah E Dixon, Ajay Mishra, Takehiko Itoh, Syma Khalid, Lana Strmecki, Katsuhiko Shirahige, Christian H Haering, Jan Lowe, Kim Nasmyth. A positively charged channel within the Smc1/Smc3 hinge required for sister chromatid cohesion, Embo Journal, Vol. 30, No. 2, pp. 364-378, 2011.  公式リンク  
  
• Kazushige Kuroha, Mayuko Akamatsu, Lyudmila Dimitrova, Takehiko Ito, Yuki Kato, Katsuhiko Shirahige, Toshifumi Inada. Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest, Embo Reports, Vol. 11, No. 12, pp. 956-961, Dec. 2010.  公式リンク  
  
• Pauli A, van Bemmel JG, Oliveira RA, Itoh T, Shirahige K, van Steensel B, Nasmyth K.. A Direct Role for Cohesin in Gene Regulation and Ecdysone Response in Drosophila Salivary Glands, Current Biology, Vol. 20, No. 20, pp. 1787-1798, Oct. 2010.  公式リンク  
  
• Jinglan Liu, Zhe Zhang, Masashige Bando, Takehiko Itoh, Matthew A. Deardorff, Dinah Clark, Maninder Kaur, Stephany Tandy, Kondo Tatsuro, Eric Rappaport, Nancy B. Spinner, Hugo Vega, Laird G. Jackson, Katsuhiko Shirahige, Ian D. Krantz. Integrative Genomic Studies on Cornelia de Lange Syndrome, American Journal of Medical Genetics Part a, Vol. 152A, No. 7, pp. 1636, July 2010.  公式リンク  
  
• Jinglan Liu, Zhe Zhang, Masashige Bando, Takehiko Itoh, Matthew A. Deardorff,, Jennifer R. Li,, Dinah Clark, Maninder Kaur, Kondo Tatsuro, Antonie D. Kline, Celia Chang, Hugo Vega, Laird G. Jackson, Nancy B. Spinner, Katsuhiko Shirahige, Ian D. Krantz,. Genome-wide DNA methylation analysis in cohesin mutant human cell lines, Nucleic Acids Research, Vol. 38, No. 17, pp. 5657-5671, May 2010.  公式リンク  
  
• Takashi Sutani, Takashi Kawaguchi, Ryuhi Kanno, Takehiko Itoh, Katsuhiko Shirahige. Budding Yeast Eco1 Counteracts Anti-"Cohesion Establishment" Function of Wpl1-Pds5 Complex, American Journal of Medical Genetics Part a, Vol. 152A, No. 7, pp. 1639-1640, 2010.  公式リンク  
  
• Andrea Pauli, Takehiko Itoh, Raquel Oliveira, Katsuhiko Shirahige, Kim Nasmyth. Cohesin: Not Just Important in Mitosis!, American Journal of Medical Genetics Part a, Vol. 152A, No. 7, pp. 1638, 2010.  公式リンク  
  
• Satoshi Kobayashi, Taeko Komoda, Jiro Araki, Takeaki Taniguchi, Takehiko Ito, Keiichi Kuma, Asao Fujiyama. Trait of "Genome Viewer" that can promptly retrieve homologous gene, Genes & Genetic Systems, Vol. 84, No. 6, pp. 449, Dec. 2009.  公式リンク  
  
• Masashige Bando, Yuki Katou, Makiko Komata, Hirokazu Tanaka, Takehiko Itoh, Takashi Sutani, Katsuhiko Shirahige. Csm3, Tof1, and Mrc1 Form a Heterotrimeric Mediator Complex That Associates with DNA Replication Forks, Journal of Biological Chemistry, Vol. 284, No. 49, pp. 34355-34365, Oct. 2009.  公式リンク  
  
• Hirokazu Tanaka, Yuki Katou, Masaru Yagura, Katsuya Saitoh, Takehiko Itoh, Hiroyuki Araki, Masashige Bando, Katsuhiko Shirahige. Ctf4 coordinates the progression of helicase and DNA polymerase alpha, Genes To Cells, Vol. 14, No. 7, pp. 807-820, June 2009.  公式リンク  
  
• Md Asadulghani, Yoshitoshi Ogura, Tadasuke Ooka, Takehiko Itoh, Akira Sawaguchi, Atsushi Iguchi, Keisuke Nakayama, Tetsuya Hayashi. The Defective Prophage Pool of Escherichia coli O157: Prophage-Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants, Plos Pathogens, Vol. 5, No. 5, May 2009.  公式リンク  
  
• Kazuto Kugou, Tomoyuki Fukuda, Shintaro Yamada, Masaru Ito, Hiroyuki Sasanuma, Saori Mori, Yuki Katou, Takehiko Itoh, Kouji Matsumoto, Takehiko Shibata, Katsuhiko Shirahige, Kunihiro Ohta. Rec8 Guides Canonical Spo11 Distribution along Yeast Meiotic Chromosomes, Molecular Biology of the Cell, Vol. 20, No. 13, pp. 3064-3076, May 2009.  公式リンク  
  
• Jinglan Liu, Zhe Zhang, Masashige Bando, Takehiko Itoh, Matthew A. Deardorff, Dinah Clark, Maninder Kaur, Stephany Tandy, Tatsuro Kondoh, Eric Rappaport, Nancy B. Spinner, Hugo Vega, Laird G. Jackson, Katsuhiko Shirahige, Ian D. Krantz. Transcriptional Dysregulation in NIPBL and Cohesin Mutant Human Cells, Plos Biology, Vol. 7, No. 5, May 2009.  公式リンク  
  
• Takashi Sutani, Takashi Kawaguchi, Ryuhi Kanno, Takehiko Itoh, Katsuhiko Shirahige. Budding Yeast Wpl1 (Rad61)-Pds5 Complex Counteracts Sister Chromatid Cohesion-Establishing Reaction, Current Biology, Vol. 19, No. 6, pp. 492-497, Mar. 2009.  公式リンク  
  
• Yoshihiro Nakao, Takeshi Kanamori, Takehiko Itoh, Yukiko Kodama, Sandra Rainieri, Norihisa Nakamura, Tomoio Shimonaga, Masahira Hattori, Toshihiko Ashikari. Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid, DNA Research, Vol. 16, No. 2, pp. 115-129, Mar. 2009.  公式リンク  
  
• Katsuhiko Shirahige, Masashige Bando, Akiko Sakai, Yuki Katou, Takehiko Itoh. Genomic Analyses of Cohesinopathy, GENES & GENETIC SYSTEMS, Vol. 84, No. 6, pp. 478, 2009.  公式リンク  
  
• Masafumi Nishizawa, Tae Komai, Yuki Katou, Katsuhiko Shirahige, Takehiko Ito, Akio Toh-e. Nutrient-Regulated Antisense and Intragenic RNAs Modulate a Signal Transduction Pathway in Yeast, Plos Biology, Vol. 6, No. 12, pp. 2817-2830, Dec. 2008.  公式リンク  
  
• Hideki Noguchi, Takeaki Taniguchi, Takehiko Itoh. MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes, DNA Research, Vol. 15, No. 6, pp. 387-396, Dec. 2008.  公式リンク  
  
• Ken-ichi Nakamura, Aya Okamoto, yuki katou, Chie Yadani, Takeshi Shitanda, Chitrada Kaweeteerawat, Tatsuro S. Takahashi, Takehiko Itoh, Katsuhiko Shirahige, Hisao Masukata, Takuro Nakagawa. Rad51 suppresses gross chromosomal rearrangement at centromere in Schizosaccharomyces pombe, Embo Journal, Vol. 27, No. 22, pp. 3036-3046, Nov. 2008.  公式リンク  
  
• Claudio D'Ambrosio, Christine Katrin Schmidt, Yuki Katou, Gavin Kelly, Takehiko Itoh, Katsuhiko Shirahige, Frank Uhlmann. Identification of cis-acting sites for condensin loading onto budding yeast chromosomes, Genes & Development, Vol. 22, No. 16, pp. 2215-2227, Aug. 2008.  公式リンク  
  
• Kerstin S. Wendt, Keisuke Yoshida, Takehiko Itoh, Masashige Bando, Birgit Koch, Erika Schirghuber, Shuichi Tsutsumi, Genta Nagae, Ko Ishihara, Tsuyoshi Mishiro, Kazuhide Yahata, Fumio Imamoto, Hiroyuki Aburatani, Mitsuyoshi Nakao, Naoko Imamoto, Kazuhiro Maeshima, Katsuhiko Shirahige, Jan-Michael Peters. Cohesin mediates transcriptional insulation by CCCTC-binding factor, Nature, Vol. 451, No. 7180, 796-801, Feb. 2008.
• Kobayashi, Satoshi, Komoda, Taeko, Araki, Jiro, Taniguchi, Takeaki, Ito, Takehiko, Kuma, Keiichi, Fujiyama, Asao, Takehiko Itoh. Trait of genome viewer in Web Saito Jabion, Genes & Genetic Systems, Vol. 83, No. 6, pp. 484, 2008.  公式リンク  
  
• Itoh, T., Yoshida, K., Went, K. S., Bando, M., Koch, B. K., Katou, Y., Masukata, H., Masai, H., Peters, J., Shirahige, K., Takehiko Itoh. Analyses of eukaryotic chromosome structure and function by array based genomic approach, Febs Journal, Vol. 274, pp. 16, 2007.  公式リンク  
  
• Hayashi, Makoto, Katou, Yuki, Itoh, Takehiko, Tazumi, Atsutoshi, Yamada, Yoshiki, Takahashi, Tatsuro, Nakagawa, Takuro, Shirahige, Katsuhiko, Masukata, Hisao, Takehiko Itoh. Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast (vol 26, pg 1327, 2007), Embo Journal, Vol. 26, No. 11, pp. 2821, 2007.  公式リンク  
  
• Hayashi, Makoto, Katou, Yuki, Itoh, Takehiko, Tazumi, Mitsutoshi, Yamada, Yoshiki, Takahashi, Tatsuro, Nakagawa, Takuro, Shirahige, Katsuhiko, Masukata, Hisao, Takehiko Itoh. Genome-wide localization of pre-RC sites and identification of replication origins in fission yeast, Embo Journal, Vol. 26, No. 5, pp. 1327-1339, 2007.  公式リンク  
  
• Koboyashi, Satoshi, Kawamoto, Shyoko, Muljadi, Hendry, Araki, Jiro, Taniguchi, Takeaki, Ito, Takehiko, Miyazaki, Satoru, Kuma, Keiichi, Fujiyama, Asao, Takehiko Itoh. Construction of the web-based comparative genome viewer, Genes & Genetic Systems, Vol. 82, No. 6, pp. 517, 2007.  公式リンク  
  
• Kurokawa, Ken, Itoh, Takehiko, Kuwahara, Tomomi, Oshima, Kenshiro, Toh, Hidehiro, Toyoda, Atsushi, Takami, Hideto, Morita, Hidetoshi, Sharma, Vineet K., Srivastava, Tulika P., Taylor, Todd D., Noguchi, Hideki, Mori, Hiroshi, Ogura, Yoshitoshi, Ehrlich, Dusko S., Itoh, Kikuji, Takagi, Toshihisa, Sakaki, Yoshiyuki, Hayashi, Tetsuya, Hattori, Masahira, Takehiko Itoh. Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes, DNA Research, Vol. 14, No. 4, pp. 169-181, 2007.  公式リンク  
  
• Kuroki, Y., Taylor, T.D., Noguchi, H., Ito, T., Toyoda, A., Sakaki, Y., Fujiyama, A., Takehiko Itoh. Reply: Has the chimpanzee Y chromosome been sequenced? [3], Nature Genetics, Vol. 38, No. 8, pp. 854-855, 2006.  公式リンク  
  
• Lindroos, Hanna Betts, Strom, Lena, Itoh, Takehiko, Katou, Yuki, Shirahige, Katsuhiko, Sjogren, Camilla, Takehiko Itoh. Chromosomal association of the Smc5/6 complex reveals that it functions in differently regulated pathways, Molecular Cell, Vol. 22, No. 6, pp. 755-767, 2006.  公式リンク  
  
• Kuroki, Y, Toyoda, A, Noguchi, H, Taylor, TD, Itoh, T, Kim, DS, Kim, DW, Choi, SH, Kim, IC, Choi, HH, Kim, YS, Satta, Y, Saitou, N, Yamada, T, Morishita, S, Hattori, M, Sakaki, Y, Park, HS, Fujiyama, A, Takehiko Itoh. Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway, Nature Genetics, Vol. 38, No. 2, pp. 158-+, 2006.  公式リンク  
  
• Taylor, TD, Noguchi, H, Totoki, Y, Toyoda, A, Kuroki, Y, Dewar, K, Lloyd, C, Itoh, T, Takeda, T, Kim, DW, She, XW, Barlow, KF, Bloom, T, Bruford, E, Chang, JL, Cuomo, CA, Eichler, E, FitzGerald, MG, Jaffe, DB, LaButti, K, Nicol, R, Park, HS, Seaman, C, Sougnez, C, Yang, XP, Zimmer, AR, Zody, MC, Birren, BW, Nusbaum, C, Fujiyama, A, Hattori, M, Rogers, J, Lander, ES, Sakaki, Y, Takehiko Itoh. Human chromosome 11 DNA sequence and analysis including novel gene identification, Nature, Vol. 440, No. 7083, pp. 497-500, 2006.  公式リンク  
  
• Koboyashi, Satoshi, Kawamoto, Shyko, Kitamoto, Asanobu, Muljadi, Hendry, Araki, Jiro, Ito, Takehiko, Miyazaki, Satoru, Takeda, Hideaki, Abe, Takashi, Sugawara, Hideaki, Gojyobori, Takashi, Fujiyama, Asao, Takehiko Itoh. Let's use "New generation biotechnology portal" for the genetic education., Genes & Genetic Systems, Vol. 81, No. 6, pp. 458, 2006.  公式リンク  
  
• Ding, Da-Qiao, Sakurai, Nobuko, Katou, Yuki, Itoh, Takehiko, Shirahige, Katsuhiko, Haraguchi, Tokuko, Hiraoka, Yasushi, Takehiko Itoh. Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast, Journal of Cell Biology, Vol. 174, No. 4, pp. 499-508, 2006.  公式リンク  
  
• Riedel, CG, Katis, VL, Katou, Y, Mori, S, Itoh, T, Helmhart, W, Galova, M, Petronczki, M, Gregan, J, Cetin, B, Mudrak, I, Ogris, E, Mechtler, K, Pelletier, L, Buchholz, F, Shirahige, K, Nasmyth, K, Takehiko Itoh. Protein phosphatase 2A protects centromeric sister chromatid cohesion during meiosis I, Nature, Vol. 441, No. 7089, pp. 53-61, 2006.  公式リンク  
  
• Nusbaum, C, Zody, MC, Borowsky, ML, Kamal, M, Kodira, CD, Taylor, TD, Whittaker, CA, Chang, JL, Cuomo, CA, Dewar, K, FitzGerald, MG, Yang, XP, Abouelleil, A, Allen, NR, Anderson, S, Bloom, T, Bugalter, B, Butler, J, Cook, A, DeCaprio, D, Engels, R, Garber, M, Gnirke, A, Hafez, N, Hall, JL, Norman, CH, Itoh, T, Jaffe, DB, Kuroki, Y, Lehoczky, J, Lui, A, Macdonald, P, Mauceli, E, Mikkelsen, TS, Naylor, JW, Nicol, R, Nguyen, C, Noguchi, H, O'Leary, SB, Piqani, B, Smith, CL, Talamas, JA, Topham, K, Totoki, Y, Toyoda, A, Wain, HM, Young, SK, Zeng, QD, Zimmer, AR, Fujiyama, A, Hattori, M, Birren, BW, Sakaki, Y, Lander, ES, Takehiko Itoh. DNA sequence and analysis of human chromosome 18, Nature, Vol. 437, No. 7058, pp. 551-555, 2005.  公式リンク  
  
• Nusbaum, C., Zody, M.C., Borowsky, M.L., Kamal, M., Kodira, C.D., Taylor, T.D., Whittaker, C.A., Chang, J.L., Cuomo, C.A., Dewar, K., FitzGerald, M.G., Yang, X., Abouelleil, A., Allen, N.R., Anderson, S., Bloom, T., Bugalter, B., Butler, J., Cook, A., DeCaprio, D., Engels, R., Garber, M., Gnirke, A., Hafez, N., Hall, J.L., Norman, C.H., Itoh, T., Jaffe, D.B., Kuroki, Y., Lehoczky, J., Lui, A., Macdonald, P., Mauceli, E., Mikkelsen, T.S., Naylor, J.W., Nicol, R., Nguyen, C., Noguchi, H., O'Leary, S.B., O'Neill, K., Piqani, B., Smith, C.L., Talamas, J.A., Topham, K., Totoki, Y., Toyoda, A., Wain, H.M., Young, S.K., Zeng, Q., Zimmer, A.R., Fujiyama, A., Hattori, M., Birren, B.W., Sakaki, Y., Lander, E.S., Takehiko Itoh. Erratum: DNA sequence and analysis of human chromosome 18 (Nature (2005) 437 (551-555) DOI: 10.1038/nature03983), Nature, Vol. 438, No. 7068, pp. 696, 2005.  公式リンク  
  
• Itoh, T, Toyoda, A, Taylor, TD, Sakaki, Y, Hattori, M, Takehiko Itoh. Identification of large ancient duplications associated with human gene deserts, Nature Genetics, Vol. 37, No. 10, pp. 1041-1043, 2005.  公式リンク  
  
• Lengronne, A, Katou, Y, Mori, S, Yokobayashi, S, Kelly, GP, Itoh, T, Watanabe, Y, Shirahige, K, Uhlmann, F, Takehiko Itoh. Cohesin relocation from sites of chromosomal loading to places of convergent transcription, Nature, Vol. 430, No. 6999, pp. 573-578, 2004.  公式リンク  
  
• Collins, FS, Lander, ES, Rogers, J, Waterston, RH, Int Human Genome Sequencing Conso, Takehiko Itoh. Finishing the euchromatic sequence of the human genome, Nature, Vol. 431, No. 7011, pp. 931-945, 2004.  公式リンク  
  
• Sakaki, Y, Watanabe, H, Taylor, T, Hattori, M, Fujiyama, A, Toyoda, A, Kuroki, Y, Itoh, T, Saitou, N, Oota, S, Kim, CG, Kitano, T, Lehrach, H, Yaspo, ML, Sudbrak, R, Kahla, A, Reinhardt, R, Kube, M, Platzer, M, Taenzer, S, Galgoczy, P, Kel, A, Bloecker, H, Scharfe, M, Nordsiek, G, Hellmann, I, Khaitovich, P, Paabo, S, Chen, Z, Wang, SY, Ren, SX, Zhang, XL, Zheng, HJ, Zhu, GF, Wang, BF, Zhao, GP, Tsai, SF, Wu, K, Liu, TT, Hsiao, KJ, Park, HS, Lee, YS, Cheong, JE, Choi, SH, Chimpanzee Chromosome 22 Sequencing C, Takehiko Itoh. Human versus chimpanzee chromosome-wide sequence comparison and its evolutionary implication, Cold Spring Harbor Symposia on Quantitative Biology, Vol. 68, pp. 455-460, 2003.  公式リンク  
  
• Kuroki, Y, Taylor, TD, Toyoda, A, Watanabe, H, Yamada, T, Morishita, S, Itoh, T, Hattori, M, Sakaki, Y, Fujiyama, A, Takehiko Itoh. Construction of a physical map for human-chimpanzee Y chromosome comparative analysis., American Journal of Human Genetics, Vol. 73, No. 5, pp. 440, 2003.  公式リンク  
  
• Takeshi Kawabata, Satoshi Fukuchi, Keiichi Homma, Motonori Ota, Jiro Araki, Takehiko Ito, Nobuyuki Ichiyoshi, Ken Nishikawa. GTOP: a database of protein structures predicted from genome sequences, Nucleic Acids Research, Vol. 30, No. 1, pp. 294-298, Jan. 2002.  公式リンク  
  
• Fujiyama, A, Watanabe, H, Toyoda, A, Taylor, TD, Itoh, T, Tsai, SF, Park, HS, Yaspo, ML, Lehrach, H, Chen, Z, Fu, G, Saitou, N, Osoegawa, K, de Jong, PJ, Suto, Y, Hattori, M, Sakaki, Y, Takehiko Itoh. Construction and analysis of a human-chimpanzee comparative clone map, Science, Vol. 295, No. 5552, pp. 131-134, 2002.  公式リンク  
  
• Itoh, T, Yada, T, Takehiko Itoh. Guide to HGREP(Human Genome Reconstruction Project), Trends in Glycoscience and Glycotechnology, Vol. 14, No. 77, pp. 189-197, 2002.  公式リンク  
  
• Toyoda, A, Noguchi, H, Taylor, TD, Ito, T, Pletcher, MT, Sakaki, Y, Reeves, RH, Hattori, M, Takehiko Itoh. Comparative genomic sequence analysis of the human chromosome 21 Down syndrome critical region, Genome Research, Vol. 12, No. 9, pp. 1323-1332, 2002.  公式リンク  
  
• Lander, ES, Int Human Genome Sequencing Consortium, Linton, LM, Birren, B, Nusbaum, C, Zody, MC, Baldwin, J, Devon, K, Dewar, K, Doyle, M, FitzHugh, W, Funke, R, Gage, D, Harris, K, Heaford, A, Howland, J, Kann, L, Lehoczky, J, LeVine, R, McEwan, P, McKernan, K, Meldrim, J, Mesirov, JP, Miranda, C, Morris, W, Naylor, J, Raymond, C, Rosetti, M, Santos, R, Sheridan, A, Sougnez, C, Stange-Thomann, N, Stojanovic, N, Subramanian, A, Wyman, D, Rogers, J, Sulston, J, Ainscough, R, Beck, S, Bentley, D, Burton, J, Clee, C, Carter, N, Coulson, A, Deadman, R, Deloukas, P, Dunham, A, Dunham, I, Durbin, R, French, L, Grafham, D, Gregory, S, Hubbard, T, Humphray, S, Hunt, A, Jones, M, Lloyd, C, McMurray, A, Matthews, L, Mercer, S, Milne, S, Mullikin, JC, Mungall, A, Plumb, R, Ross, M, Shownkeen, R, Sims, S, Waterston, RH, Wilson, RK, Hillier, LW, McPherson, JD, Marra, MA, Mardis, ER, Fulton, LA, Chinwalla, AT, Pepin, KH, Gish, WR, Chissoe, SL, Wendl, MC, Delehaunty, KD, Miner, TL, Delehaunty, A, Kramer, JB, Cook, LL, Fulton, RS, Johnson, DL, Minx, PJ, Clifton, SW, Hawkins, T, Branscomb, E, Predki, P, Richardson, P, Wenning, S, Slezak, T, Doggett, N, Cheng, JF, Olsen, A, Lucas, S, Elkin, C, Uberbacher, E, Frazier, M, Gibbs, RA, Muzny, DM, Scherer, SE, Bouck, JB, Sodergren, EJ, Worley, KC, Rives, CM, Gorrell, JH, Metzker, ML, Naylor, SL, Kucherlapati, RS, Nelson, DL, Weinstock, GM, Sakaki, Y, Fujiyama, A, Hattori, M, Yada, T, Toyoda, A, Itoh, T, Kawagoe, C, Watanabe, H, Totoki, Y, Taylor, T, Weissenbach, J, Heilig, R, Saurin, W, Artiguenave, F, Brottier, P, Bruls, T, Pelletier, E, Robert, C, Wincker, P, Rosenthal, A, Platzer, M, Nyakatura, G, Taudien, S, Rump, A, Yang, HM, Yu, J, Wang, J, Huang, GY, Gu, J, Hood, L, Rowen, L, Madan, A, Qin, SZ, Davis, RW, Federspiel, NA, Abola, AP, Proctor, MJ, Myers, RM, Schmutz, J, Dickson, M, Grimwood, J, Cox, DR, Olson, MV, Kaul, R, Shimizu, N, Kawasaki, K, Minoshima, S, Evans, GA, Athanasiou, M, Schultz, R, Roe, BA, Chen, F, Pan, HQ, Ramser, J, Lehrach, H, Reinhardt, R, McCombie, WR, de la Bastide, M, Dedhia, N, Blocker, H, Hornischer, K, Nordsiek, G, Agarwala, R, Aravind, L, Bailey, JA, Bateman, A, Batzoglou, S, Birney, E, Bork, P, Brown, DG, Burge, CB, Cerutti, L, Chen, HC, Church, D, Clamp, M, Copley, RR, Doerks, T, Eddy, SR, Eichler, EE, Furey, TS, Galagan, J, Gilbert, JGR, Harmon, C, Hayashizaki, Y, Haussler, D, Hermjakob, H, Hokamp, K, Jang, WH, Johnson, LS, Jones, TA, Kasif, S, Kaspryzk, A, Kennedy, S, Kent, WJ, Kitts, P, Koonin, EV, Korf, I, Kulp, D, Lancet, D, Lowe, TM, McLysaght, A, Mikkelsen, T, Moran, JV, Mulder, N, Pollara, VJ, Ponting, CP, Schuler, G, Schultz, JR, Slater, G, Smit, AFA, Stupka, E, Szustakowki, J, Thierry-Mieg, D, Thierry-Mieg, J, Wagner, L, Wallis, J, Wheeler, R, Williams, A, Wolf, YI, Wolfe, KH, Yang, SP, Yeh, RF, Collins, F, Guyer, MS, Peterson, J, Felsenfeld, A, Wetterstrand, KA, Patrinos, A, Morgan, MJ, Int Human Genome Sequencing Conso, Takehiko Itoh. Initial sequencing and analysis of the human genome, Nature, Vol. 409, No. 6822, pp. 860-921, 2001.  公式リンク  
  
• Graf, D, Timmons, PM, Hitchins, M, Episkopou, V, Moore, G, Ito, T, Fujiyama, A, Fisher, AG, Merkenschlager, M, Takehiko Itoh. Evolutionary conservation, developmental expression, and genomic mapping of mammalian Twisted gastrulation, Mammalian Genome, Vol. 12, No. 7, pp. 554-560, 2001.  公式リンク  
  

著書

• 半田宏, 伊藤武彦, 岩崎博史, 岡田典弘, 岸本健雄, 工藤明, 白髭克彦, 田中幹子, 徳永万喜洋, 広瀬茂久, 村上聡, 菊池韶彦. ハートウェル遺伝学-遺伝子、ゲノム、そして生命システムへ-, メディカルサイエンスインターナショナル, Mar. 2010.

国際会議発表 (査読有り)

• URUNANONT Puntakarn, MIZUSHIMA Shusei, ITOH Takehiko, KUROIWA Asato.. Eccentric SRY of the Okinawa spiny rat and its sex-determining ability revealed by in silico and in vitro analysis, APCC8 (8th Asia-Pacific Chromosome Colloquium), Sept. 2023.
• Matiz Luisa, Miki Okuno, Itoh Takehiko, Mizushima Shusei, Kuroiwa Asato. Loss of the Y chromosome changes the configuration of the X inactivation center in the genus Tokudaia, APCC8 (8th Asia-Pacific Chromosome Colloquium), Sept. 2023.
• Issei Nakazato, Miki Okuno, Takehiko Itoh, Nobuhiro Tsutsumi, Shin-ichi Arimura. Targeted C-to-T base editing in the plastid genome of Arabidopsis thaliana by plastid-targeting base editors, ptpTALECD and ptpTALECD_v2, the 15th International Association for Plant Biotechnology Congress, Aug. 2023.
• Nanami KOSAKA, Yoshiki HARADA, Issei NAKAZATO, Miki OKUNO, Takehiko ITOH, Wataru YAMORI, Nobuhiro TSUTSUMI, Shin-ichi ARIMURA. Development Of ATechnology For The Induction Of Plant-Organelle- Genome-Specific Random Mutagenesis, the 15th International Association for Plant Biotechnology Congress, Aug. 2023.
• Takayuki Enomoto, Hidefumi Nishida, Tetsuo Iwata, Akito Fujita, Kanako Nakayama, Takahiro Kashiwagi, Yasue Hatanaka, Hiro Kondo, Rei Kajitani, Takehiko Itoh, Makoto Ohmoto, Ichiro Matsumoto, Junji Hirota. Mechanism of odorant receptor class choice in mice, The 48th Naito Conference on Integrated Sensory Sciences - Pain, Itch, Smell and Taste, Oct. 2019.
• Miki Okuno, Yukiko Kodama, Takehiko Itoh. A whole genome comparison between lager brewing yeast Weihenstephan 34/70 and its ancestral strains, Yeast, Vol. 30, pp. 187, Sept. 2013.  公式リンク  
  
• Yukiko Kodama, Miki Okuno, Takehiko Itoh. Whole genome analysis of a lager brewing yeast Weihenstephan 34/70 using next generation sequencing technology, Yeast, Vol. 30, pp. 185, Sept. 2013.  公式リンク  
  

国内会議発表 (査読有り)

• 小坂七海, 原田佳樹, 中里一星, 奥野未来, 伊藤武彦, 矢守航, 堤伸浩, 有村慎一. 植物オルガネラゲノムの順遺伝学的解析を目的としたランダム変異導入技術の開発の試み, 日本植物生理学会 第65回年会, Mar. 2024.
• Kyle Dominic Barnuevo, Hironori Katoh, Sipra Mohapatra, Naoki Nagano, Takehiko Itoh, Michiya Matsuyama, Tapas Chakraborty, Kohei Ohta. Characterization of temperature-sensitive Transient Receptor Potential Cation Channel Subfamily Vanilloid (TRPV) 1 and its modulation of fshb expression in chub mackerel (Scomber japonicus), 令和6年度公益社団法人日本水産学会春季大会, Mar. 2024.
• 田中 裕之, 奈良 雅大, 豊田 敦, 山根 京子, 伊藤 武彦. 異質4倍体ワサビのゲノム解析, 日本育種学会145回, Mar. 2024.
• 嶋田駿, 小野島孝雄, 伊藤武彦, 立花和則. エダアシクラゲの性決定機構, 日本動物学会関東支部会, Mar. 2024.
• 小坂七海, 原田佳樹, 中里一星, 奥野未来, 伊藤武彦, 矢守航, 堤伸浩, 有村慎一. 人工融合タンパク質によるオルガネラゲノム特異的なランダム変異導入技術. 形質転換T1世代の評価, 日本育種学会 第145回講演会, Mar. 2024.
• 江口瑛, 八尋逸清, Sipra Mohapatra, 向井幸樹, 伊藤武彦, 長野直樹, 松山倫也, Tapas Chakraborty, 太田耕平. マサバ黄体形成ホルモン（LH）のノックアウトによる不妊化−妊性回復系統の作出の試み, 令和6年度公益社団法人日本水産学会春季大会, Mar. 2024.
• 竹内諒, 大野薫, 大賀浩史, 伊藤武彦, 長野直樹, 藤原篤志, 佐久間哲史, 山本卓, Chakraborty Tapas, 太田耕平, 松山倫也. ゲノム編集により作出したおとなしいマサバのオフターゲット解析, 令和6年度公益社団法人日本水産学会春季大会, Mar. 2024.
• 佐藤桜雅, Chakraborty Tapas, 加藤洋教, 八尋逸清, 入路光雄, 伊藤武彦, 長野直樹, 松山倫也, 太田耕平. ゲノム編集と組換え濾胞刺激ホルモンによるマサバの生殖統御の試み, 令和6年度公益社団法人日本水産学会春季大会, Mar. 2024.
• 佐藤桜雅, 八尋逸清, Chakraborty Tapas, 入路光雄, 伊藤武彦, 長野直樹, 松山倫也, 太田耕平. ゲノム編集と組換え濾胞刺激ホルモンによるマサバの生殖統御の試み, 日本水産増殖学会 第21回大会, Dec. 2023.
• 八尋逸清, 佐藤桜雅, Chakraborty Tapas, Mohapatra Sipra, 伊藤武彦, 杣本智軌, 松山倫也, 太田耕平. マサバ Scomber japonicus 体側筋内への自家・他家精巣移植に伴う生理応答, 第47回日本比較内分泌学会大会, Nov. 2023.
• 星野 辰彦, 土居 秀幸, 伊藤 武彦. 海底下深部堆積物における微生物叢の成り立ちと適応, 微生物生態学会, Nov. 2023.
• 吉原佑哉, 増村駿介, 水村航大, 立山和樹, Chakraborty Tapas, 豊田敦, 伊藤武彦, 高橋史也, 馬場崇, 諸橋憲一郎, 松山倫也, 長濱嘉孝, 太田耕平. 性転換魚ホシササノハベラの生殖腺を用いたシングルセルRNA-seq解析と2種の幹細胞, 第47回日本比較内分泌学会大会, Nov. 2023.
• 木村 優希, Matiz Luisa, 奥野 未来, 伊藤 武彦, 水島 秀成, 黒岩 麻里. 古顎類エミューにおける精巣決定遺伝子DMRT1の発現解析と卵巣決定候補遺伝子の探索, 分子生物学会, Nov. 2023.
• 吉田 悠, 西村 陽介, 伊藤 萌, 長谷川 万純, 髙野 剛史, 後藤 恭宏, 伊藤 武彦, 林 哲也, 吉澤 晋. センジュナマコ（Scotoplanes sp.）体壁・管足の細菌叢を優占する細菌 の発見とゲノム解析, 日本微生物生態学会第36回, Nov. 2023.
• Barnuevo Kyle Dominic, Katoh Hironori, Mohapatra Sipra, Itoh Takehiko, Matsuyama Michiya, Chakraborty Tapas, Ohta Kohei. Sex-related and temperature-dependent responses of transient receptor potential cation channel subfamily vanilloid (TRPVs) genes in chub mackerel., 第47回日本比較内分泌学会大会, Nov. 2023.
• Galotta Mariel, Chakraborty Tapas, Ogino Yukiko, Saitou Marie, Nagano Naoki, Itoh Takehiko, Matsuyama Michiya, Ohta Kohei. Epigenetic modulation of reproductive relative genes in adult chub mackerel Scomber Japonicus during reproductive season., 第47回日本比較内分泌学会大会, Nov. 2023.
• Galotta Mariel, Chakraborty Tapas, Ogino Yukiko, Saitou Marie, Nagano Naoki, Itoh Takehiko, Matsuyama Michiya, Ohta Kohei. Epigenetic modulation of reproductive relative genes in adult chub mackerel Scomber Japonicus during reproductive season., 第47回日本比較内分泌学会大会, Nov. 2023.
• 木村 優希, Matiz Luisa, 奥野 未来, 伊 藤 武彦, 水島 秀成, 黒岩 麻里. エミューにおける精巣決定遺伝子DMRT1の発現解析と卵巣決定候補遺伝子の探索, 染色体学会, Oct. 2023.
• 中里一星, 奥野未来, 伊藤武彦, 堤伸浩, 有村慎一. 高活性型の塩基置換酵素ptpTALECD_v2を用いた、シロイヌナズナの葉緑体ゲノムの標的一塩基置換, 第40回日本植物バイオテクノロジー学会, Sept. 2023.
• 東秀平, 宇野真, 八尋逸清, 北野載, 豊田敦, 伊藤武彦, Chakraborty Tapas, 松山倫也, 太田耕平. カタクチイワシの濾胞刺激ホルモン（Fsh）とその受容体, 日本水産学会秋季大会, Sept. 2023.
• Nanami KOSAKA, Yoshiki HARADA, Issei NAKAZATO, 奥野 未来, 伊藤 武彦, Wataru YAMORI, Nobuhiro TSUTSUMI, Shin-ichi ARIMURA. オルガネラゲノム特異的にランダムな変異を導入する2通りの技術の開発, 日本育種学会, Sept. 2023.
• Shankar Chereddy, Rei Kajitani, Takehiko Itoh, Makoto Kashima, Takashi Makino. Deciphering metazoan evolution to understand the evolutionary history of Whole-body regeneration, 日本進化学会第２５回大会, Sept. 2023.
• Makoto Kashima, Rei Komura, Rei Kajitani, Takehiko Itoh, Atsushi Toyoda. Knowledge and remaining questions of adult pluripotent stem cell in freshwater planarians., the 56th Annual Meeting of the Japanese Society for Developmental Biology, July 2023.
• Shankar Chereddy, Rei Kajitani, Miho Hosaka, Takehiko Itoh, Makoto Kashima, Takashi Makino. Elucidating the role of epigenetic factors in chromatin modification during regeneration of a planaria, the 56th Annual Meeting of the Japanese Society for Developmental Biology, July 2023.
• 須谷尚史, 宝田裕, 立花広太, 伊藤武彦, 白髭克彦. 大規模解析により明らかになった日本人女性の顔面皮膚細菌叢の構造, 第38回日本分子生物学会年会, Dec. 2015.

国際会議発表 (査読なし・不明)

• Takahiro Yamabe, Takehiko Itoh. Short Chromosomes and Gene Conservation in Hawk Moths (Lepidoptera: Sphingidae), Plant and Animal Genome 31 Conference, Jan. 2024.
• Tatsuki Kinugawa, Yasuhiro Tanizawa, Yasukazu Nakamura, Takehiko Itoh, Hiroyuki Tanaka, Hideki Hirakawa, Akihisa Shinozawa, Tadashi Baba, Kenji Oda, Daisuke Ide, Katsuyuki Yamato, Megumi Ishimaru. Comparative genomic analysis of 25 peach varieties, The 4th Asian Horticultural Congress, Aug. 2023.
• Minami Imamoto, Haruna Nakamura, Mitsuto Aibara, Takehiko Itoh, Masato Nikaido. Did egg-eater lose the ecological competition? Strong population bottleneck in matumbi hunter the paedophage, XXIIIrd International Congress of Genetics, June 2023.
• Shun Ouchi, Rei Kajitani, Takehiko Itoh. GreenHill: A De Novo Chromosome-Level Scaffolding and Phasing Tool Using Hi-C, Plant & Animal Genome Conference (PAG30), Jan. 2023.
• Takahiro Yamabe, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh. Chromosome-Level De Novo Genome Assembly and Comparative Genome Analysis of the Coffee Bee Hawk Moth, Cephonodes Hylas, Plant & Animal Genome Conference (PAG30), Jan. 2023.
• Imamoto, M., Nakamura, H., Aibara, M., Takehiko., Nikaido, M.. Evolutionary history of egg hunting cichlids in Lake Victoria, The 2nd AsiaEvo Conference, Aug. 2021.
• Hatashima, R., Toyoda, A., Kajitani, Takehiko Itoh, Nikaido, M.. A key factor for parallel evolution of hypertrophied lips in East African cichlid fishes, The 2nd AsiaEvo Conference, Aug. 2021.
• Rei Kajitani, Miki Okuno, Hiroyuki Tanaka, Atsushi Toyoda, Takehiko Itoh. Platanus-allee is a de novo haplotype assembler designed for organisms with highly divergent haplotypes: an update, Plant and Animal Genome XXVIII Conference, Jan. 2020.
• Miki Okuno, Rei Kajitani, Hiroyuki Tanaka, Shuhei Mizushima, Asato Kuroiwa, Takehiko Itoh. Whole-genome sequencing and comparative analysis of Emu provides insights into sex chromosome evolution of the palaeognathae clade, Plant and Animal Genome XXVIII Conference, Jan. 2020.
• Ajeng Pramono, Hirokazu Kuwahara, Takehiko Itoh, Toyoda Atsushi, Moriya Ohkuma, Akinori Yamada, Yuichi Hongoh. Bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut, Prorhinotermes japonicus (Isoptera: family Rhinotermitidae), The 5th International Conference on Biological Science, Sept. 2017.
• Natsuno Suda, Daisuke Shirakawa, Takehiko Itoh, Masashige Bando, Katsuhiko Shirahige, Kohsuke Kataoka, Cheryll Tickle, Mikiko Tanaka. Dimeric combinations of MafB, c-maf, c-Jun and c-Fos control the apoptosis–survival balance in limb patterning under BMP/FGF regulation, 12th ICLDR, June 2012.

国内会議発表 (査読なし・不明)

• 松田(今井) 典子, 室 智大, 福井 崇弘, 木内 隆史, 阿部 佳澄, 髙嶋 彰太, 豊田 敦, 鈴木 穣, 伊藤 武彦, 勝間 進. ボルバキア感染アワノメイガ細胞のscMultiome解析, 日本蚕糸学会, Mar. 2024.
• 落合乾大, 塙大輝, 伊藤武彦, 五島剛太. ハネモBryopsis sp.の全ゲノム解読と比較ゲノム解析, 藻類学会, Mar. 2024.
• 山部貴央, 伊藤武彦. 比較ゲノム解析による鱗翅目昆虫の染色体進化の解明, 第46回日本分子生物学会年会, Dec. 2023.
• 今井大智, 伊藤武彦. 相同染色体間の差異を考慮したゲノム配列構築手法の開発, 第46回日本分子生物学会年会, Dec. 2023.
• 塙⼤輝, ⽥中裕之, 五島剛太, 伊藤武彦. ハネモの全ゲノム配列構築, 第46回日本分子生物学会年会, Dec. 2023.
• ⼩野島孝雄, ⽴花和則, 伊藤武彦. エダアシクラゲ(Cladonema radiatum)のゲノム配列内における性特異的領域の特定, 第46回日本分子生物学会年会, Dec. 2023.
• 小坂七海, 原田佳樹, 中里一星, 奥野未来, 伊藤武彦, 矢守航, 堤伸浩, 有村慎一. 植物オルガネラゲノムの育種利用を目指したランダム変異導入手法の開発, 日本ミトコンドリア学会 第22回年会, Nov. 2023.
• 賈云帆, 相原光人, 長澤竜樹, 伊藤武彦, 二階堂雅人. 透明ナマズとその近縁種を用いた発現変動遺伝子解析による筋肉透明化遺伝子の探索, 日本動物学会関東支部会第24回大会, Mar. 2023.
• 田中 裕之, 堀立樹, 山本祥平, 豊田敦, 矢野健太郎, 山根京子, 伊藤武彦. ワサビゲノム解読の現状, 日本育種学会第143回講演会, Mar. 2023.
• 松岡健太朗, 持丸侑太, 奥野未来, 清岡美穂, 石崎比奈子, 豊田敦, 黒岩麻里, 伊藤武彦. トクノシマトゲネズミの新規ゲノム構築とX染色体上祖先Y領域の比較解析, 第45回日本分子生物学会年会, Nov. 2022.
• 持丸侑太, 松岡健太朗, 奥野未来, 清岡美穂, 石崎比奈子, 豊田敦, 黒岩麻里, 伊藤武彦. オキナワトゲネズミの新規ゲノム配列決定とneo性染色体のゲノム解析, 第45回日本分子生物学会年会, Nov. 2022.
• 今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人. 卵泥棒・マタンビハンターのボトルネックと進化史, 日本進化学会第27回沼津大会, Aug. 2022.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. 免疫関連遺伝子の発現消失がもたらしたシクリッドの唇肥大化平行進化, 日本進化学会第26回沼津大会, Aug. 2022.
• 今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人. 卵を食べるシクリッドの系統的起源, 日本動物学会関東支部第74回大会, Mar. 2022.
• 畑島諒, 待井長敏, 豊田敦, 梶谷嶺, 長澤竜樹, 伊藤武彦, 二階堂雅人.. 免疫システムがもたらしたシクリッドの唇肥大化平行進化, 第2回日本遺伝学会春の分科会, Mar. 2022.
• 今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人. 全ゲノムから迫るビクトリア湖産シクリッド Haplochromis sp. “matumbi hunter”の集団史, 日本遺伝学会第93回大会, Sept. 2021.
• 服部拓海, 梶谷嶺, 伊藤武彦. Hi-Cデータを用いたビニングツールの開発, 第10回生命医薬情報学連合大会IIBMP2021, Sept. 2021.
• 山部貴央, 梶谷嶺, 豊田敦, 伊藤武彦. スズメガ科昆虫オオスカシバの新規ゲノムアセンブリと比較ゲノム解析, 第92回日本動物学会オンライン米子大会, Sept. 2021.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. 東アフリカ産シクリッドで見られる唇肥大化平行進化の分子メカニズム, 日本進化学会第23回東京大会, Aug. 2021.
• 今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人. 卵泥棒の起源からシクリッドの適応放散を探る, 日本進化学会第23回東京大会, Aug. 2021.
• 今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人. ヴィクトリア湖に生息する卵・稚魚食性シクリッド Haplochromis sp. “matumbi hunter” の進化の歴史, 日本動物学会関東支部第73回大会, Mar. 2021.
• 梶谷嶺, 石井裕太, 伊藤武彦. ロングおよびショートリードを活用するハイブリッド型メタゲノムアセンブラの新規開発, 第15回日本ゲノム微生物学会年会, Mar. 2021.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドにおける唇肥大化の平行進化メカニズム, 日本進化学会第22回大会, Sept. 2020.
• 大内俊, 梶谷嶺, 豊田敦, 伊藤武彦. Hi-C法による染色体レベルのscaffolding，ハプロタイプ構築手法の開発と高ヘテロ接合性サンプル（イトマキヒトデ）への応用, 日本動物学会第91回大会2020, Sept. 2020.
• 今本南, 中村遥奈, 相原光人, 伊藤武彦, 二階堂雅人. ヴィクトリア湖固有シクリッド Haplochromis sp. “matumbi hunter” の遺伝的多様性, 日本進化学会第22回大会, Sept. 2020.
• 中村遥奈, 相原光人, 豊田敦, 伊藤武彦, 二階堂雅人. 全ゲノム解析によるヴィクトリア湖産シクリッドにおける種特有の適応パターンの解明, 日本遺伝学会第92回大会, Sept. 2020.
• 中村遥奈, 畑島諒, 相原光人, 豊田敦, 伊藤武彦, 二階堂雅人. ヴィクトリア湖産シクリッドHaplochromis chilotesの全ゲノム配列解析による分集団における適応過程の解明, 日本進化学会第22回大会, Sept. 2020.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドにおける唇肥大化の平行進化メカニズム解明, 日本遺伝学会第92回大会, Sept. 2020.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドにおける唇肥大化の平行進化メカニズム, 日本動物学会第91回大会, Sept. 2020.
• 山部貴央, 小林史弥, 梶谷嶺, 伊藤武彦. アゲハチョウ属5種の比較ゲノム解析, 日本動物学会関東支部第72回大会, Mar. 2020.
• 中村遥奈, 相原光人, 豊田敦, 伊藤武彦, 二階堂雅人. 全ゲノム配列解析による異なる湖底環境に生息するヴィクトリア湖産シクリッド3種の適応過程の解明, 第2回日本遺伝学会春季分科会, Mar. 2020.
• 中村遥奈, 相原光人, 豊田敦, 伊藤武彦, 二階堂雅人. 全ゲノム配列解析による異なる湖底環境に生息するヴィクトリア湖産シクリッド3種の適応過程の解明, 日本動物学会関東支部第72回大会, Mar. 2020.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドにおける唇肥大化の平行進化メカニズム, 日本動物学会関東支部第72回大会, Mar. 2020.
• 湯淺英知, 中村優太, 小林史弥, 安田仁奈, 梶谷嶺, 伊藤武彦. オニヒトデ属(Acanthaster spp.)の比較ゲノム解析, 日本生態学会第67回全国大会, Mar. 2020.
• 服部淳, 吉村大, 谷口愛樹, 林哲也, 伊藤武彦. Comprehensive detection of insertion sequences in bacterial genomes, 第93回日本細菌学会総会, Feb. 2020.
• 佐藤柾幸, 西村浩平, 堀哲也, 深川竜郎, 伊藤武彦. Hi-Cを用いたネオセントロメア形成に伴う染色体高次構造の変化の解析, 第42回日本分子生物学会年会, Dec. 2019.
• 宮本淳太郎, 奥野未来, 伊藤武彦, 水島秀成, 黒岩麻里. ニホンウズラにおける性分化関連遺伝子および新規性決定候補遺伝子の解析, 第42回日本分子生物学会年会, Dec. 2019.
• 黒岩麻里, 奥野未来, 伊藤武彦, 寺尾美穂, 小川湧也, 高田修治, 水島秀成. トゲネズミ属におけるSRY遺伝子に依存しない性決定の分子メカニズム, 第42回日本分子生物学会年会, Dec. 2019.
• 山崎はるか, 梶谷嶺, 伊藤武彦, 千葉和義. イトマキヒトデ卵における母性mRNAのU修飾とRNA再利用, 第42回日本分子生物学会年会, Dec. 2019.
• 畑島諒, 鈴木健太, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドの唇肥大化における平行進化の遺伝的メカニズム解明, 日本遺伝学会第91回大会, Sept. 2019.
• 服部 淳, 伊藤 武彦, 吉村 大. Comprehensive detection of insertion sequences in bacterial genomes, 第8回生命医薬情報学連合大会, Sept. 2019.
• 中村 優太, 梶谷 嶺, 小林 史弥, 湯淺 英知, 伊藤 武彦. ドラフトゲノムの不完全性が遺伝子構造アノテーションに及ぼす影響の解析, 第8回生命医薬情報学連合大会, Sept. 2019.
• 小林 史弥, 梶谷 嶺, 奥野 未来, 湯淺 英知, 中村 優太, 伊藤 武彦. ドラフトゲノムに対応した遺伝子構造アノテーション自動構築パイプラインの開発, 第8回生命医薬情報学連合大会, Sept. 2019.
• 樋口拓人, 西原秀典, 梶谷嶺, 豊田敦, 伊藤武彦, 岡田典弘, 二階堂雅人. 東アフリカ産淡水魚シクリッドゲノムにおける祖先多型遺伝子座の起源, 日本動物学会第90回大会, Sept. 2019.
• Palihati Maierdan, Hideo Tsubouchi, Rei Kajitani, 韓龍雲, Takehiko Itoh, Hiroshi Iwasaki. BRCA2 homolog of Cryptococcus liquefaciens required for DNA repair, 酵母遺伝学フォーラム第52回研究報告会, Sept. 2019.
• 樋口拓人, 西原秀典, 梶谷嶺, 豊田敦, 伊藤武彦, 岡田典弘, 二階堂雅人. ゲノムワイドなSINE 挿入解析から東アフリカ産シクリッドにおける祖先多型の持続性を解明する, 日本進化学会第21回大会, Aug. 2019.
• 中村遥奈, 畑島諒, 豊田敦, 伊藤武彦, 二階堂雅人. 全ゲノム比較が明らかにしたヴィクトリア湖産シクリッド3種の適応プロセス, 日本進化学会第21回大会, Aug. 2019.
• 樋口拓人, 西原秀典, 梶谷嶺, 伊藤武彦, 二階堂雅人. 東アフリカシクリッドゲノムにおける祖先多型遺伝子座の起源, 第１回遺伝学会分科会, Mar. 2019.
• Palihati M, Tsubouchi H, Han, YW, Ito, T, Iwasaki H. BRCA2 homolog from Cyptococcus liquefaciens, 第1回日本遺伝学会春季分科会, Mar. 2019.
• 福井雅基, 梶谷嶺, 伊藤武彦. 全ゲノムショットガンデータを利用した包括的なゲノム上のSegmental Duplication検出手法の開発, 第41回日本分子生物学会年会, Nov. 2018.
• 岡野真佑, 奥野未来, 梶谷嶺, 黒岩麻里, 伊藤武彦. Y染色体をもたないアマミトゲネズミの遺伝子配列を用いた進化学的解析, Nov. 2018.
• 篠田恭寛, 梶谷嶺, 小林 史弥, 髙橋和希, 中村優太, 湯淺英知, 伊藤武彦. 網羅的遺伝子構造予測自動アノテーションパイプラインの開発, 第41回日本分子生物学会年会, Nov. 2018.
• 鈴木彦有, 佐久間敦丈, 依田涼太, 岡部 正隆, 伊藤武彦, 廣田順二, 二階堂雅人. 脊椎動物の４億年以上に渡る進化の過程で保持されてきたフェロモン受容体, 第8回 Tokyo Vertebrate Morphology Meeting, Aug. 2018.
• 樋口拓人, 西原秀典, 梶谷嶺, 伊藤武彦, 二階堂雅人. 東アフリカ産シクリッド全ゲノムを対象にした祖先多型遺伝子座の網羅的探索, 日本進化学会第20回大会, Aug. 2018.
• 岡本大樹, 伊藤武彦. NGSによるSingle Locus Sequence Typing(SLST)を⽤いたニキビに対する⽪膚常在細菌の役割の理解に向けて, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 梶⾕嶺, 小椋義俊, 後藤恭宏, 林哲也, 伊藤武彦. 10X-Linked-reads、Mate-pairを活⽤したメタゲノムアセンブリ⼿法の開発, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 吉村⼤, 後藤 恭宏, 小椋義俊, 林哲也, 伊藤武彦. 全ゲノム配列情報を⽤いた近縁菌株間⾼精度SNP検出パイプラインBactSNPの開発, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 古宮正隆, 西村浩平, 堀哲也, 深川竜郎, 伊藤武彦. 4C-Seqを用いたネオセントロメア形成に伴う染色体高次構造変化の解析, 第40回日本分子生物学会年会（2017年度生命科学系合同年次大会）, Dec. 2017.
• 角崎太郎, 石毛大輔, 岩崎博史, 伊藤武彦. Hi-Cを用いた二倍体出芽酵母の染色体構造解析, 第40回日本分子生物学会年会（2017年度生命科学系合同年次大会）, Dec. 2017.
• 湯淺英知, 梶谷嶺, 髙橋和希, 吉村大, 小椋義俊, Zac Forsman, Nalinee Thongtham, Niphon Phongsuwan, Coralie Taquet, Marc Taquet, 林哲也, 伊藤武彦, 安田仁奈. 異所的に種分化したオニヒトデ種間での受精遺伝子の進化, 日本サンゴ礁学会第20回大会, Nov. 2017.
• 髙橋和希, 梶谷嶺, 湯淺英知, Nalinee Thongtham, Niphon Phongsuwan, Zac Forsman, 安田仁奈, 伊藤武彦. 全ゲノム情報に基づく太平洋とインド洋のオニヒトデの比較解析, 日本サンゴ礁学会第20回大会, Nov. 2017.
• 野川駿, 岩永紗弥, 梶谷嶺, 越智洋絵, 鈴木穣, 千葉和義, 伊藤武彦. イトマキヒトデの卵成熟前後におけるmRNA3’末端の網羅的解析, 日本動物学会第88回大会, Sept. 2017.
• 梶谷嶺, 吉村大, 奥野未来, 豊田敦, 伊藤武彦. Platanus2: a de novo haplotype assembler enabling comprehensive accesses to divergent heterozygous region, 第6回生命医薬情報学連合大会（IIBMP2017）, Sept. 2017.
• 田中良樹, 梶谷嶺, 豊田敦, 後藤友二, 久保田宗一郎, 伊藤武彦. ショートリードを用いたリピート配列のde novo検出法の開発, Sept. 2017.
• 中村佳司, 村瀬一典, 伊藤武彦, ジャック メニエール, 吉野修司, 黒木真理子, 木全恵子, 磯部順子, 勢戸和子, 江藤良樹, 前田詠里子, 緒方喜久代, 成松浩志, 齋藤志保子, 八柳潤, 伊豫田淳, 大西真, 大岡唯祐, 後藤恭宏, 小椋義俊, 林哲也. 比較ゲノムによる腸管出血性大腸菌 O145:H28 の多様性解析, 第90回日本細菌学会総会, Mar. 2017.
• 後藤恭宏, 片平雄之, 吉村大, 伊藤武彦, 小椋義俊, 林哲也. 超高精度分子疫学解析で迫る病原菌の動態, 第90回日本細菌学会総会, Mar. 2017.
• 梶谷嶺, 小椋義俊, 後藤恭宏, 吉村大, 奥野未来, 林哲也, 伊藤武彦. メタゲノムショットガンデータからの株ハプロタイプ配列構築手法の開発, 第11回日本ゲノム微生物学会年会, Mar. 2017.
• 吉村大, 後藤恭宏, 小椋義俊, 梶谷嶺, 奥野未来, 林哲也, 伊藤武彦. 全ゲノム配列情報を用いた菌株間系統樹推定パイプラインの開発, 第11回日本ゲノム微生物学会年会, Mar. 2017.
• 森田有貴, 奥野未来, 吉村大, 立花広太, 梶谷嶺, 古俣麻希子, 白髭克彦, 森川あすか, 伊藤武彦. 次世代シークエンサを用いたSLSTによるPropionibacterium acnesタイピング解析, 第11回日本ゲノム微生物学会年会, Mar. 2017.
• 佐藤光彦, 小椋義俊, 中村佳司, 西田留梨子, 後藤恭宏, 久恒順三, 菅井基行, 伊藤武彦, 林哲也. ブドウ球菌属におけるライブラリ調製キットNextera XTによるGC含有量と相関した シーケンスバイアス, 第11回日本ゲノム微生物学会年会, Mar. 2017.
• 奥野未来, 立花広太, 吉村大, 森田有貴, 梶谷嶺, 古俣麻希子, 白髭克彦, 森川あすか, 伊藤武彦. 皮膚常在細菌Propionibacterium acnesの全ゲノム比較解析, 第11回日本ゲノム微生物学会年会, Mar. 2017.
• 番匠康雄, 梶谷嶺, 伊藤武彦. PacBioおよびIlluminaシークエンサを用いた新規アセンブル手法の開発, 第11回日本ゲノム微生物学会年会, Mar. 2017.
• 吉村大, 後藤恭宏, 小椋義俊, 林哲也, 伊藤武彦. ゲノム配列情報を用いた近縁菌株間高精度 SNP 検出手法の開発：病原菌感染経路推測への応用, 第90回日本細菌学会総会, Mar. 2017.
• 和田陽介, 伊藤武彦, 梶谷嶺. 全ゲノムシークエンスデータに基づいた高精度配列構造変異検出プロトコルの構築, 第39回日本分子生物学会年会, Nov. 2016.
• 西村浩平, 堀哲也, 古宮正隆, 伊藤武彦, 深川竜郎. ネオセントロメア形成領域における染色体3D構造, 第39回日本分子生物学会年会, Nov. 2016.
• 伊澤和輝, 麥島雄太, 桑原宏和, 河合幹彦, 木原久美子, Nathan Lo, 雪真弘, 伊藤武彦, 大熊盛也, 本郷裕一. 対ファージ防衛機構が示すEndomicrobium属細胞内共生細菌の適応進化, 第18回日本進化学会大会, Aug. 2016.
• 吉村大, 後藤恭宏, 小椋義俊, 林哲也, 伊藤武彦. 次世代シークエンサを用いた菌株間 SNP 検出における問題点と検出プロトコルの構築, 第10回日本ゲノム微生物学会年会, Mar. 2016.
• 梶谷嶺, 小椋義俊, 林哲也, 伊藤武彦. 低コスト・高精度なバクテリアゲノム配列構築手法の開発, 第10回日本ゲノム微生物学会年会, Mar. 2016.
• 森本博也, 伊藤武彦. 真核微生物ゲノムに対する階層的 ab initio 遺伝子予測手法開発, 第10回日本ゲノム微生物学会年会, Mar. 2016.
• 吉村大, 後藤恭宏, 小椋義俊, 林哲也, 伊藤武彦. 全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発：病原菌感染経路推測への応用, 第89回日本細菌学会総会, Mar. 2016.
• 千代島隆広, 立花和則, 梶谷嶺, 岸本健雄, 伊藤武彦. イトマキヒトデのde novoアセンブリ, 第38回日本分子生物学会年会, Dec. 2015.
• 奥野未来, 児玉由紀子, 伊藤武彦. 異種交配株ラガービール酵母と近縁種のゲノム比較解析, 第9回日本ゲノム微生物学会年会, Mar. 2015.
• 森本博也, 筒井康博, 岩崎博史, 伊藤武彦. 深海酵母Cryptococcus liquefaciens strain N6のゲノム再構築とRNA-Seqによる銅耐性の解析, 第9回日本ゲノム微生物学会年会, Mar. 2015.
• 梶谷嶺, 野口英樹, 桑原知己, 小椋義俊, 林哲也, 伊藤武彦. メタゲノム用de novoアセンブリ・クラスタリングツールMetaPlatanusの開発, 第9回日本ゲノム微生物学会年会, Mar. 2015.
• 吉村大, 後藤恭宏, 小椋義俊, 林哲也, 伊藤武彦. 全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発：病原菌感染経路推測への応用, 第9回日本ゲノム微生物学会年会, Mar. 2015.
• 奥野未来, 児玉由紀子, 伊藤武彦. single nucleotide variation (SNV)を考慮したラガービール酵母のゲノム再解析, 日本農芸化学会2014東京大会, Mar. 2014.
• 児玉由紀子, 奥野未来, 伊藤武彦. 次世代シーケンサーを用いた下面ビール酵母のゲノム解析, 日本農芸化学会2014東京大会, Mar. 2014.
• 梶谷嶺, 小椋義俊, 桑原知己, 林哲也, 伊藤武彦. メタゲノム用de novoアセンブラの開発およびIlluminaデータを用いたベンチマーク, 第8回日本ゲノム微生物学会年会, Mar. 2014.
• 須田夏野, 白川大介, 伊藤武彦, 中戸隆一郎, 坂東優篤, 白髭克彦, 片岡浩介, Cheryll Tickle, 田中幹子. Dimeric combinations of MafB, cFos, and cJun control the apoptosis–survival balance in limb morphogenesis, 日本動物学会第84回大会, Sept. 2013.
• 西村智洋, 立花和則, 岸本健雄, 伊藤武彦. イトマキヒトデゲノムのde novoアセンブリ, 日本動物学会第84回岡山大会, Sept. 2013.
• 須田夏野, 白川大介, 伊藤武彦, 中戸隆一郎, 坂東優篤, 白髭克彦, 片岡浩介, Cheryll Tickle, 田中幹子. Dimeric combinations of MafB, c-maf, c-Jun and c-Fos control the apoptosis–survival balance in limb patterning under BMP/FGF regulation, 日本動物学会関東支部会第65回大会, Mar. 2013.
• 奥野未来, 児玉由紀子, 伊藤武彦. Illuminaシークエンサを用いたラガービール酵母Weihenstephan34/70ゲノムの決定, 第7回日本ゲノム微生物学会年会, Mar. 2013.
• 梶谷嶺, 伊藤武彦. メタゲノムデータ用de novoアセンブラーの開発, 第7回日本ゲノム微生物学会年会, Mar. 2013.
• 原田真幸, 小椋義俊, 伊藤武彦, 桑原知巳, 林哲也. ヒト体内細菌叢における接合型トランスポゾンの解析, 第35回日本分子生物学会年会, Dec. 2012.
• 福原健輔, 伊藤武彦, 畑敬士, 桑山秀一, 漆原秀子. 細菌性粘菌種間における比較トランスクリプトーム解析, 第35回日本分子生物学会年会, Dec. 2012.
• 矢花充, 長安英治, 小椋義俊, 林哲也, 丸山治彦, 伊藤武彦. 高ヘテロ接合性をもつベネズエラ糞線虫のゲノム解析, 第35回日本分子生物学会年会, Dec. 2012.
• 梶谷嶺, 伊藤武彦. 高ヘテロ接合性ゲノムのde novoアセンブリ, 第35回日本分子生物学会年会, Dec. 2012.
• 吉村慶人, 伊藤武彦. Contigレベルの真核ゲノム配列に対する効果的な遺伝子予測パイプラインの開発, 第35回日本分子生物学会年会, Dec. 2012.
• Natsuno Suda, Daisuke Shirakawa, Takehiko Itoh, Masashige Bando, Katsuhiko Shirahige, Kohsuke Kataoka, Cheryll Tickle, Mikiko Tanaka. Dimeric combinations of MafB, c-maf, c-Jun and c-Fos control the apoptosis–survival balance in limb patterning under BMP/FGF regulation, Joint Meeting of JSDB 45th & JSCB 64th, May 2012.
• 梶谷嶺, 野口英樹, 伊藤武彦. 新規ゲノムアセンブラー：Platanus, 第34回日本分子生物学会年会, Dec. 2011.
• 吉村慶人, 伊藤武彦, 野口英樹. 454配列に対応したab initio遺伝子予測ツールの開発, 第34回日本分子生物学会年会, Dec. 2011.
• Natsuno Suda, Daisuke Shirakawa, Takehiko Itoh, Masashige Bando, Katsuhiko Shirahige, Kohsuke Kataoka, Cheryll Tickle, Mikiko Tanaka. AP-1 transcription factors regulate the number of apoptotic cells in developing chick limb buds, 44th Annual Meeting of the Japanese Society of Developmental Biologists, May 2011.

特許など

• 岩崎博史, 坪内英生, 伊藤武彦, 梶谷嶺, ﾊﾟﾙﾊｯﾄﾏﾙﾀﾞﾝ, 韓　龍雲. 遺伝性乳癌卵巣癌症候群の治療薬のスクリーニング方法. 特許. 公開. 国立大学法人東京工業大学. 2018/04/13. 特願2018-077857. 2019/10/24. 特開2019-184500. 2019.

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