@book{CTT100836461,
  author = {分子ロボティクス研究会: 浅沼浩之 and 遠藤政幸 and 葛谷明紀 and 小宮健 and 小長谷明彦 and 萩谷昌己 and 藤本健造 and 松浦和則 and ほか全３０名},
  title = {分子ロボティクス概論 ～分子のデザインでシステムをつくる},
  publisher = {情報計算化学生物学会（CBI学会）出版},
  year = 2019,
}

@book{CTT100724578,
  author = {小長谷明彦},
  title = {バイオ情報学-パーソナルゲノム解析から生体シミュレーションまで},
  publisher = {コロナ社},
  year = 2009,
}

@book{CTT100724580,
  author = {Tan Tin Wee and Peter Arzberger and Akihiko Konagaya},
  title = {Grid Computing in Life Sciences},
  publisher = {Biopolis, Singapore},
  year = 2006,
}

@book{CTT100744555,
  author = {Akihiko Konagaya and Kenji Satou (Ed)},
  title = {Grid Computing in Life Science},
  publisher = {Springer, Berlin, Heidelberg},
  year = 2005,
}

@article{CTT100744168,
  author = {Atsuko Sato and Hitomi Yuki and Chiduru Watanabe and Jun-ichi Saito and Akihiko Konagaya and Teruki Honma},
  title = {Prediction of the site of CYP3A4 metabolism of tolterodine by  molecular dynamics simulation from multiple initial structures of the  CYP3A4-tolterodine complex},
  journal = {Chem-Bio Informatics Journal},
  year = 2017,
}

@article{CTT100745510,
  author = {Akihiko Konagaya and Greg Gutmann and Akira Kakugo and Daisuke Inoue},
  title = {Parallel Interaction Detection Algorithms for a Particle-based Live Controlled Real-time Microtubule Gliding Simulation System Accelerated by GPGPUInter.},
  journal = {J. of New Generation Computing (NGC)},
  year = 2017,
}

@article{CTT100801963,
  author = {渡邊 健太 and 小長谷明彦},
  title = {セマンティックウェブを活用した 医薬文書理解支援システムの構築},
  journal = {日本化学会情報化学部会誌},
  year = 2017,
}

@article{CTT100801849,
  author = {石川 智久 and 湯田 浩太郎 and 多田 幸雄 and Akihiko Konagaya},
  title = {医薬農薬化学の開拓者・藤田稔夫先生を偲んで},
  journal = {ＣＢＩジャーナル},
  year = 2017,
}

@article{CTT100801532,
  author = {Kabir and A.Md.R. and Ito, M. and Uenishi, K. and Anan, S. and Akihiko Konagaya and Sada, K. and Sugiura, M. and Kakugo, A.},
  title = {A photoregulated ATP generation system for in vitro motility assay},
  journal = {Chemistry Letters},
  year = 2017,
}

@article{CTT100801529,
  author = {Asami, S. and Kiga, D. and Akihiko Konagaya},
  title = {Constraint-based perturbation analysis with cluster Newton method: A case study of personalized parameter estimations with irinotecan whole-body physiologically based pharmacokinetic model},
  journal = {BMC Systems Biology},
  year = 2017,
}

@article{CTT100801522,
  author = {Saito, A. and Farhana, T.I. and Kabir and A.Md.R. and Inoue, D. and Akihiko Konagaya and Sada, K. and Kakugo, A.},
  title = {Understanding the emergence of collective motion of microtubules driven by kinesins: role of concentration of microtubules and depletion force},
  journal = {RSC Advances},
  year = 2017,
}

@article{CTT100733888,
  author = {Takahiro Nitta and Arif Md. Rashedul Kabir and Kazuki Sada and Jian Ping Gong and Akihiko Konagaya and Akira Kakugo},
  title = {Sensing surface mechanical deformation using active probes driven by motor proteins},
  journal = {Nature Communications},
  year = 2016,
}

@article{CTT100733867,
  author = {◾Philippe Gaudreau and Ken Hayami and Y. Aoki and Hassan Safouhi and Akihiko Konagaya},
  title = {Improvements to the cluster Newton method for underdetermined inverse problems},
  journal = {Journal of Computational and Applied Mathematics},
  year = 2016,
}

@article{CTT100733862,
  author = {Greg Gutmann Daisuke Inoue and Akira Kakugo and Akihiko Konagaya},
  title = {Real-Time 3D Microtubule Gliding Simulation Accelarated by GPU Computing},
  journal = {Inter. J. of Automation and Computing (IJAC)},
  year = 2016,
}

@article{CTT100801469,
  author = {Ito, M. and Rashedul Kabir, A.M. and Islam, M.S. and Inoue, D. and Wada, S. and Sada, K. and Akihiko Konagaya and Kakugo, A.},
  title = {Mechanical oscillation of dynamic microtubule rings},
  journal = {RSC Advances},
  year = 2016,
}

@article{CTT100802325,
  author = {Maeda, Kazuya and Yoshida, Kenta and Sugiyama, Yuichi and Akihiko Konagaya and Kusuhara, Hiroyuki},
  title = {PRECISE ESTIMATIONS OF THE INHIBITION CONSTANTS BY PBPK ANALYSES OF METABOLITES' PHARMACOKINETIC ALTERATIONS USING CLUSTER NEWTON METHOD},
  journal = {DRUG METABOLISM REVIEWS},
  year = 2015,
}

@article{CTT100802314,
  author = {Toshimoto, Kota and Yoshida, Kenta and Yoshikado, Takashi and Maeda, Kazuya and Kusuhara, Hiroyuki and Akihiko Konagaya and Sugiyama, Yuichi},
  title = {ESTABLISHING A VERSATILE ANALYSIS METHOD OF DRUG-DRUG INTERACTIONS WITH THE PHYSIOLOGICALLY-BASED PHARMACOKINETIC MODEL USING THE CLUSTER NEWTON METHOD},
  journal = {DRUG METABOLISM REVIEWS},
  year = 2015,
}

@article{CTT100733865,
  author = {◾Daisuke Inoue and Bulbul Mahemoti and Arif Md. Rashedul Kabir and Tamann Ishrat Farhana and Kiyotaka Tokuraku and Kazuki Sada and Akihiko Konagaya and Akira Kakugo},
  title = {Depletion force induced collective motion of microtubules driven by knesin},
  journal = {Nanoscale},
  year = 2015,
}

@article{CTT100733866,
  author = {Yuexing Han and Akito Hara and Akinori Kuzuya and Rousuke Watanabe and Yuichi Ohya and Akihiko Konagaya},
  title = {Automatic Recognition of DNA Pliers in Atomic Force Microscopy Images},
  journal = {New Generation Computing},
  year = 2015,
}

@article{CTT100801294,
  author = {Han, Y. and Daisuke, I. and Kakugo, A. and Akihiko Konagaya},
  title = {Tracking single microtubules by using B-spline curves and Hausdorff distance},
  journal = {2014 4th International Conference on Image Processing Theory, Tools and Applications, IPTA 2014},
  year = 2015,
}

@article{CTT100802321,
  author = {Maeda, Kazuya and Yoshida, Kenta and Kusuhara, Hiroyuki and Akihiko Konagaya and Sugiyama, Yuichi},
  title = {APPLICATION OF A NOVEL COMPUTATIONAL METHOD TO ESTIMATE FEASIBLE SOLUTION SPACES FOR DETERMINING MULTIPLE PARAMETERS IN PHYSIOLOGICALLY-BASED PHARMACOKINETIC (PBPK) MODEL},
  journal = {DRUG METABOLISM REVIEWS},
  year = 2014,
}

@article{CTT100745511,
  author = {Yutaka Ueno and Shuntaro Ito and Akihiko Konagaya},
  title = {Implementing a modeling software for animated protein-complex interactions using a physics simulation library},
  journal = {J. Bioinformatics and Computational Biology},
  year = 2014,
}

@article{CTT100745521,
  author = {青木康憲 and 速水謙 and 小長谷明彦},
  title = {劣決定逆問題に対するCluster Newton法とその薬物動態モデルへの応用},
  journal = {応用数理},
  year = 2014,
}

@article{CTT100745520,
  author = {Masami Hagiya and Akihiko Konagaya and Satoshi Kobayashi and Satoshi Murata},
  title = {Molecular Robots with Sensors and Intelligence},
  journal = {Accounts of Chemical Research},
  year = 2014,
}

@article{CTT100745607,
  author = {Yasunori Aoki and Ken Hayami and Hans De Sterck and Akihiko Konagaya},
  title = {Cluster Newton Method for Sampling Multiple Solutions of Underdetermined Inverse Problems:Application to a Parameter Identification Problem in Pharmacokinetics},
  journal = {SIAM J. Scientific Computing},
  year = 2014,
}

@article{CTT100745512,
  author = {Greg Gutmann and Daisuke Inoue and Akira Kakugo and Akihiko Konagaya},
  title = {Real-Time 3D Microtubule Gliding Simulation, Life System Modeling and Simulation},
  journal = {Communications in Compuer and Information Science},
  year = 2014,
}

@article{CTT100745609,
  author = {Akihiko konagaya and Masami Hagiya and Satoshi Kobayashi and Hirohide Saito and Satoshi Murata},
  title = {Molecular Robotics Project: Toward Artifacts with Sensors, Actuators and Intelligence},
  journal = {},
  year = 2013,
}

@article{CTT100802341,
  author = {Yoshida, K. and Maeda, K. and Kusuhara, H. and Akihiko Konagaya and Sugiyama, Y.},
  title = {PARAMETER OPTIMIZATION IN PHYSIOLOGICALLY-BASED PHARMACOKINETIC (PBPK) MODEL FOR THE PREDICTION OF TRANSPORTER-MEDIATED DRUG-DRUG INTERACTIONS WITH A NEW GLOBAL PARAMETER OPTIMIZATION METHOD},
  journal = {CLINICAL PHARMACOLOGY & THERAPEUTICS},
  year = 2013,
}

@article{CTT100745612,
  author = {Akihiko Konagaya and Murata S and Konagaya A and Kobayashi S and Saito H and Hagiya M},
  title = {Molecular Robotics: A New Paradigm for Artifacts},
  journal = {New Generation Computing, Ohmsha, Ltd. and Springer},
  year = 2013,
}

@article{CTT100745608,
  author = {Daniel Berrar and Akihiko Konagaya and Alfons Schuster},
  title = {Turing Test Considered Mostly Harmless},
  journal = {New Generation Computing},
  year = 2013,
}

@article{CTT100745613,
  author = {Akihiko K},
  title = {Towards an In Silico Approach to Personalized Pharmacokinetics},
  journal = {},
  year = 2012,
}

@article{CTT100653862,
  author = {里城 晴紀 and 吉瀬 謙二 and 小長谷 明彦},
  title = {マルチコアアーキテクチャのための密行列LU分解のプログラミング技術},
  journal = {情報処理学会論文誌コンピューティングシステム},
  year = 2010,
}

@article{CTT100745634,
  author = {Arikuma T and Yoshikawa S and Azuma R and Watanabe K and Muramatsu K and Konagaya A},
  title = {Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation},
  journal = {BMC Bioinformatics},
  year = 2008,
}

@article{CTT100745638,
  author = {小長谷明彦},
  title = {生体分子間相互作用と局在に関する空間シミュレーションモデル},
  journal = {情報処理学会論文誌：数理モデル化と応用},
  year = 2007,
}

@article{CTT100746480,
  author = {小長谷 明彦 and 有熊 威 and 吉川 澄美 and 我妻 竜三 and 梅津 亮 and 小西 史一},
  title = {オントロジーとシミュレーションを用いたハイブリット型薬物間相互作用予測システムの設計思想},
  journal = {シミュレーション},
  year = 2007,
}

@article{CTT100745635,
  author = {Azuma R. and Umetsu R. and Ohki S. and Konishi F. and Yoshikawa S. and Konagaya A. and Matsumura K},
  title = {Discovering dynamic characteristics of biochemical pathways using geometric patterns among parameter-parameter dependencies in differential equations.},
  journal = {New Generation Computing},
  year = 2007,
}

@article{CTT100747510,
  author = {Takasaki, S. and Kawamura, Y. and Konagaya, A.},
  title = {Selecting effective siRNA sequences by using radial basis function network and decision tree learning},
  journal = {BMC Bioinformatics},
  year = 2006,
}

@article{CTT100747538,
  author = {Azuma, R. and Kitagawa, T. and Kobayashi, H. and Konagaya, A.},
  title = {Particle simulation approach for sub-cellular dynamic and interactions of biological molecules},
  journal = {BMC Bioinformatics},
  year = 2006,
}

@article{CTT100747500,
  author = {Konagaya, A},
  title = {Trends in life science grid: from computing grid to knowledge grid},
  journal = {BMC Bioinformatics},
  year = 2006,
}

@article{CTT100747585,
  author = {A. Konagaya and F. Konishi and M. Hatakeyama and K. Satou},
  title = {The Superstructure toward Open Bioinformatics Grid},
  journal = {New Generation Computing},
  year = 2004,
}

@article{CTT100745509,
  author = {小長谷明彦},
  title = {遺伝子とコンピュータ 生命の設計図をひもとく},
  journal = {},
  year = 2000,
}

@inproceedings{CTT100747581,
  author = {Konishi, F. and Konagaya, A.},
  title = {The Architectural Design of High-Throughput BLAST Services on OBIGrid},
  booktitle = {Heidelberg, Germany},
  year = 2017,
}

@inproceedings{CTT100747582,
  author = {Fukuzaki, A. and Nagashima, T. and Ide, K. and Konishi, F. and Hatakeyama, M. and Yokoyama, S. and Kuramitsu, S. and Konagaya, A.},
  title = {Genome-wide functional annotation environment for Thermus thermophilus in OBIGrid},
  booktitle = {LNBI Springer},
  year = 2017,
}

@inproceedings{CTT100733969,
  author = {Akihiko Konagaya},
  title = {Development of an Amoeba-Type Molecular Robot with Sensors and Intelligence},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100733968,
  author = {Bulibuli Mahemuti and Daisuke Inoue and Akira Kakugo and Akihiko Konagaya},
  title = {Investigation of the Microtubule Dynamics with Probabilistic Data Association Filter},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100733955,
  author = {Greg Gutmann and Daisuke Inoue and Akira Kakugo and Akihiko Konagaya},
  title = {Using a Master and Slave approach for GPGPU Computing to Achieve Optimal Scaling in a 3D Real-Time Simulation},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100745611,
  author = {Yoshida K and Maeda K and Kusuhara H and Konagaya A},
  title = {Estimation of feasible solution space using Cluster Newton Method: application to pharmacokinetic analysis of irinotecan with physiologically-based pharmacokinetic models},
  booktitle = {BMC Systems Biology},
  year = 2013,
}

@inproceedings{CTT100654643,
  author = {里城晴紀 and 吉瀬謙二 and 小長谷明彦},
  title = {Cell/B.E.におけるSIMD論理関数を利用した編集距離計算の実装法},
  booktitle = {SACSIS2009論文集},
  year = 2009,
}

@inproceedings{CTT100746481,
  author = {Arikuma, T. and Yoshikawa, S. and Watanabe, K. and Matsumura, K. and Konagaya, A},
  title = {Ontology-driven hypothetic assertion (OHA) for drug interaction prediction.},
  booktitle = {International Multi-Symposiums on Computer and Computational Sciences},
  year = 2007,
}

@inproceedings{CTT100747559,
  author = {Akihiko Konagaya},
  title = {An Architecture Design of Open Genome Services},
  booktitle = {World Scientific},
  year = 2006,
}

@inproceedings{CTT100747549,
  author = {Konagaya, A.},
  title = {:International Conference etc. OBIGrid: Towards the “Ba” for sharing resources, Services and knowledge for bioinformatics},
  booktitle = {},
  year = 2006,
}

@inproceedings{CTT100747554,
  author = {Akihiko Konagaya},
  title = {The Grid as a “Ba” for Biomedical Knowledge Creation},
  booktitle = {World Scientific},
  year = 2005,
}

@inproceedings{CTT100747580,
  author = {Satou, K. and Nakashima, Y. and Tsuji, S and Defago, X. and Konagaya, A},
  title = {An Integrated System for Distributed Bioinformatics Environment on Grids},
  booktitle = {LNBI Springer},
  year = 2005,
}

@inproceedings{CTT100747584,
  author = {Akihiko Konagaya and P.W. Arzberger and A. Farazdel and A. Konagaya and L. Ang and S. Shimojo and R.L. Stevens:},
  title = {“Life Sciences and Cyberinfrastructure: Dual and Interacting Revolutions that will Drive Future Science”,},
  booktitle = {New Generation Computing,},
  year = 2004,
}

@inproceedings{CTT100747586,
  author = {Yoshikawa, S. and Satou, K. and Konagaya, A.},
  title = {Drug Interaction Ontology (DIO) for Inferences of Possible Drug-Drug Interactions},
  booktitle = {Medinfo},
  year = 2004,
}

@inproceedings{CTT100745610,
  author = {Han Y and Hara A and Kuzuya A and Watanabe R and Ohya Y and Konagaya A},
  title = {Automatic Recognition of DNA Nanostructures on Atomic Force Microscopy (AFM) Image: First Experience on DNA Pliers},
  booktitle = {},
  year = ,
}

@misc{CTT100802114,
  author = {小長谷明彦},
  title = {特集「AI創薬の可能性について」の企画にあたって},
  year = 2017,
}

@misc{CTT100801056,
  author = {Akihiko Konagaya},
  title = {Molecular Robotics and Controlling},
  year = 2015,
}

@misc{CTT100802120,
  author = {小長谷明彦},
  title = {21pm1-F2 分子アメーバ型ロボットの実現に向けて},
  year = 2014,
}

@misc{CTT100745614,
  author = {Aoki Y and Hayami K and De Sterck Hans and Konagaya A},
  title = {Cluster Newton Method for Sampling Multiple Solutions of an Underdetermined Inverse Problem: Parmeter Identificaiton for Pharmacokinetics},
  year = 2011,
}

@misc{CTT100802028,
  author = {小長谷明彦},
  title = {生命と情報通信-情報通信技術に生命機能を吹き込む-},
  year = 2010,
}

@misc{CTT100801847,
  author = {佐藤 賢二 and 小長谷明彦 and Kenji Satou and Akihiko Konagaya and 金沢大学 and 東京工業大学 and Kanazawa University and Tokyo Institute of Technology},
  title = {分子生物情報研究会(SIG-MBI)(<特集>研究会総覧)},
  year = 2010,
}

@misc{CTT100828283,
  author = {小長谷明彦 and KALBUAJIBHARATA},
  title = {癌特異的遺伝子制御ネットワークの生成方法、生成用プログラム及び生成用装置},
  howpublished = {登録特許},
  year = 2023,
  month  = {},
  note   = {特願2018-174060(2018/09/18), 特開2020-046867(2020/03/26), 特許第7209334号(2023/01/12)}
}