@article{CTT100766869,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Yutaka Akiyama},
  title = {Rigid-Docking Approaches to Explore Protein–Protein Interaction Space},
  journal = {Advances in Biochemical Engineering/Biotechnology(Network Biology)},
  year = 2017,
}

@article{CTT100715183,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Yutaka Akiyama},
  title = {Specificity of broad protein interaction surfaces for proteins with multiple binding partners},
  journal = {Biophysics and Physicobiology},
  year = 2016,
}

@article{CTT100666828,
  author = {Masahito Ohue and Yuri Matsuzaki and Nobuyuki Uchikoga and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK: An all-to-all protein-protein interaction prediction system using tertiary structure data},
  journal = {Protein and Peptide Letters},
  year = 2014,
}

@article{CTT100666827,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Takehiro Shimoda and Toshiyuki Sato and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 3.0: A high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments},
  journal = {Source Code for Biology and Medicine},
  year = 2013,
}

@article{CTT100666829,
  author = {Yuri Matsuzaki and Masahito Ohue and Nobuyuki Uchikoga and Yutaka Akiyama},
  title = {Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis},
  journal = {Protein and Peptide Letters},
  year = 2013,
}

@article{CTT100666831,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Re-docking scheme for generating near-native protein complexes by assembling residue interaction fingerprints},
  journal = {PLOS ONE},
  year = 2013,
}

@inproceedings{CTT100715161,
  author = {内古閑伸之 and 松崎由理 and 大上雅史 and 秋山泰},
  title = {細菌走化性におけるタンパク質間相互作用面の解析},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100715113,
  author = {Masahito Ohue and Yuri Matsuzaki and Nobuyuki Uchikoga and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100715115,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Yutaka Akiyama},
  title = {Analysis of Physico-Chemical Properties of Protein Docking Decoys Generated by Rigid-Body Docking},
  booktitle = {},
  year = 2016,
}

@inproceedings{CTT100715131,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Analysis of protein docking decoys in terms of physicochemical properties of protein surfaces using rigid-body docking process},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715133,
  author = {Yuri Matsuzaki and Masahito Ohue and Nobuyuki Uchikoga and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK: A high-performance protein-protein interaction prediction software for petascale supercomputing environments},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715168,
  author = {大上雅史 and 内古閑伸之 and 松崎由理 and 秋山泰},
  title = {アミノ酸プロファイルによるタンパク質ペプチド複合体のポストドッキング解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715170,
  author = {内古閑伸之 and 松崎由理 and 大上雅史 and 秋山泰},
  title = {剛体アンサンブルドッキングによって得られた候補構造群における相互作用残基ペアの特徴の解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715173,
  author = {大上雅史 and 内古閑伸之 and 松崎由理 and 秋山泰},
  title = {タンパク質間相互作用残基の物理化学的性質による単純化プロファイルを用いたポストドッキング解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715140,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Yutaka Akiyama},
  title = {Prediction of human-virus protein-protein interactions by exhaustive rigid docking.},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715136,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Analysis of amino acid properties in interaction surfaces of decoys generated by re-docking},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715177,
  author = {内古閑伸之 and 松崎由理 and 大上雅史 and 広川貴次 and 秋山泰},
  title = {Analysis of properties of protein-protein interaction surface areas involved in more near-native conmplexes by Re-docking scheme},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715176,
  author = {大上雅史 and 松崎由理 and 内古閑伸之 and 石田貴士 and 秋山泰},
  title = {MEGADOCK: a high-performance protein-protein interaction prediction tool on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100666898,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Re-docking scheme to explore docking search space by using interaction profiles},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100666854,
  author = {大上雅史 and 下田雄大 and 松崎由理 and 内古閑伸之 and 鈴木脩司 and 石田貴士 and 秋山泰},
  title = {MEGADOCK 4.0: mega-dock per dayへの道のり},
  booktitle = {生命情報科学若手の会 第5回研究会},
  year = 2014,
}

@inproceedings{CTT100666899,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Takashi Ishida and Yutaka Akiyama},
  title = {Prediction of protein-protein interactions based on tertiary structures and transcription information},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100666838,
  author = {Takehiro Shimoda and Masahito Ohue and Yuri Matsuzaki and Takayuki Fujiwara and Nobuyuki Uchikoga and Takashi Ishida and Yutaka Akiyama},
  title = {The MEGADOCK project: Ultra-high-performance protein-protein interaction prediction tools on supercomputing environments},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100666851,
  author = {大上雅史 and 松崎由理 and 内古閑伸之 and 石田貴士 and 秋山泰},
  title = {MEGADOCK：構造ドッキング計算を用いたタンパク質間相互作用の大規模予測},
  booktitle = {第13回日本蛋白質科学会年会},
  year = 2013,
}

@inproceedings{CTT100666845,
  author = {Masahito Ohue and Yuri Matsuzaki and Nobuyuki Uchikoga and Kohei Yamamoto and Takayuki Fujiwara and Takehiro Shimoda and Toshiyuki Sato and Takashi Ishida and Yutaka Akiyama},
  title = {Protein-protein interaction prediction based on rigid-body docking with ultra-high-performance computing technique: applications to affinity prediction on CAPRI round 21 and interactome analyses},
  booktitle = {CAPRI 2013 5th Evaluation Meeting},
  year = 2013,
}

@inproceedings{CTT100666852,
  author = {大上雅史 and 松崎由理 and 内古閑伸之 and 山本航平 and 下田雄大 and 藤原隆之 and 石田貴士 and 秋山泰},
  title = {MEGADOCK 3.0：超並列タンパク質間相互作用予測システム},
  booktitle = {生命情報科学若手の会 第4回研究会},
  year = 2013,
}

@inproceedings{CTT100658033,
  author = {秋山泰 and 松崎由理 and 石田貴士 and 大上雅史 and 内古閑 伸之},
  title = {網羅的タンパク質ドッキング予測プログラムMEGADOCKの開発と応用},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100658089,
  author = {松崎由理 and 大上雅史 and 石田貴士 and 内古閑伸之 and 秋山泰},
  title = {大規模タンパク質間ネットワーク推定に関する研究},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100658081,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Takashi Ishida and Yutaka Akiyama},
  title = {Protein-protein interaction network prediction by using rigid-body docking tool MEGADOCK},
  booktitle = {},
  year = 2013,
}