@book{CTT100892702,
  author = {Akio Kitao},
  title = {Molecular Simulation to Investigate Open–Close Motion of a Flagellar Export Apparatus Protein FlhAC},
  publisher = {},
  year = 2023,
}

@book{CTT100892703,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {Molecular dynamics},
  publisher = {},
  year = 2022,
}

@article{CTT100916741,
  author = {Shinji Ikizawa and Tatsuki Hori and Tegar Nurwahyu Wijaya and Hiroshi Kono and Zhen Bai and Tatsuhiro Kimizono and Wenbo Lu and Duy Phuoc Tran and Akio Kitao},
  title = {PaCS-Toolkit: Optimized Software Utilities for Parallel Cascade Selection Molecular Dynamics (PaCS-MD) Simulations and Subsequent Analyses},
  journal = {The Journal of Physical Chemistry B},
  year = 2024,
}

@article{CTT100916742,
  author = {Tegar N. Wijaya and Akio Kitao},
  title = {Energetic and Kinetic Origins of CALB Interfacial Activation Revealed by PaCS-MD/MSM},
  journal = {The Journal of Physical Chemistry B},
  year = 2023,
}

@article{CTT100885818,
  author = {Mariko Kojima and Satoshi Abe and Tadaomi Furuta and Duy Phuoc Tran and Kunio Hirata and Keitaro Yamashita and Yuki Hishikawa and Akio Kitao and Takafumi Ueno},
  title = {Engineering of an in-cell protein crystal for fastening a metastable conformation of a target miniprotein},
  journal = {Biomater. Sci.},
  year = 2023,
}

@article{CTT100892704,
  author = {Tatsuro Nishikino and Norihiro Takekawa and Duy Phuoc Tran and Jun-ichi Kishikawa and Mika Hirose and Sakura Onoe and Seiji Kojima and Michio Homma and Akio Kitao and Takayuki Kato and Katsumi Imada},
  title = {Structure of MotA, a flagellar stator protein, from hyperthermophile},
  journal = {Biochemical and Biophysical Research Communications},
  year = 2022,
}

@article{CTT100892705,
  author = {Akio Kitao},
  title = {Conserved GYXLI Motif of FlhA Is Involved in Dynamic Domain Motions of FlhA Required for Flagellar Protein Export},
  journal = {Microbiology Spectrum},
  year = 2022,
}

@article{CTT100874613,
  author = {Satoshi Yamashita and Misao Mizuno and Kazuhiro Takemura and Akio Kitao and Yasuhisa Mizutani},
  title = {Dependence of Vibrational Energy Transfer on Distance in a Four-Helix Bundle Protein: Equidistant Increments with the Periodicity of α Helices},
  journal = {The Journal of Physical Chemistry B},
  year = 2022,
}

@article{CTT100874618,
  author = {Akio Kitao},
  title = {Dissociation Pathways of the p53 DNA Binding Domain from DNA and Critical Roles of Key Residues Elucidated by dPaCS-MD/MSM},
  journal = {Journal of Chemical Information and Modeling},
  year = 2022,
}

@article{CTT100874612,
  author = {Duy Phuoc Tran and Yuta Taira and Takumi Ogawa and Ryoga Misu and Yoshiki Miyazawa and Akio Kitao},
  title = {Inhibition of the hexamerization of SARS-CoV-2 endoribonuclease and modeling of RNA structures bound to the hexamer},
  journal = {Scientific Reports},
  year = 2022,
}

@article{CTT100874622,
  author = {Hiroaki Hata and Duy Phuoc Tran and Marzouk and Akio Kitao},
  title = {Binding free energy of protein/ligand complexes calculated using dissociation Parallel Cascade Selection Molecular Dynamics and Markov state model},
  journal = {Biophysics and Physicobiology},
  year = 2021,
}

@article{CTT100874619,
  author = {Steven Hayward and Akio Kitao},
  title = {The role of the half-turn in determining structures of Alzheimer’s Aβ wild-type and mutants},
  journal = {Journal of Structural Biology},
  year = 2021,
}

@article{CTT100874620,
  author = {Takeo Yamawaki and Misao Mizuno and Haruto Ishikawa and Kazuhiro Takemura and Akio Kitao and Yoshitsugu Shiro and Yasuhisa Mizutani},
  title = {Regulatory Switching by Concerted Motions on the Microsecond Time Scale of the Oxygen Sensor Protein FixL},
  journal = {The Journal of Physical Chemistry B},
  year = 2021,
}

@article{CTT100851847,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Using molecular dynamics simulations to prioritize and understand AI-generated cell penetrating peptides},
  journal = {Scientific Reports},
  year = 2021,
}

@article{CTT100874638,
  author = {Akio Kitao},
  title = {Delineating the conformational landscape of the adenosine A<sub>2A</sub> receptor during G protein coupling.},
  journal = {Cell},
  year = 2021,
}

@article{CTT100833570,
  author = {Hiroaki Hata and Yasutaka Nishihara and Masayoshi Nishiyama and Yoshiyuki Sowa and Ikuro Kawagishi and Akio Kitao},
  title = {High pressure inhibits signaling protein binding to the flagellar motor and bacterial chemotaxis through enhanced hydration},
  journal = {Scientific Reports},
  year = 2020,
}

@article{CTT100833541,
  author = {Aini Gusmira and Kazuhiro Takemura and Shin Yong Lee and Takehiko Inaba and Kyoko Hanawa-Suetsugu and Kayoko Oono-Yakura and Kazuma Yasuhara and Akio Kitao and Shiro Suetsugu},
  title = {Regulation of caveolae through cholesterol-depletion-dependent tubulation mediated by PACSIN2},
  journal = {Journal of Cell Science},
  year = 2020,
}

@article{CTT100833575,
  author = {Kenichiro Takaba and Duy Phuoc Tran and Akio Kitao},
  title = {Edge expansion parallel cascade selection molecular dynamics simulation for investigating large-amplitude collective motions of proteins},
  journal = {The Journal of Chemical Physics},
  year = 2020,
}

@article{CTT100810106,
  author = {Kei Terayama and Ai Shinobu and Koji Tsuda and Kazuhiro Takemura and Akio Kitao},
  title = {evERdock BAI: Machine-learning-guided selection of protein-protein complex structure},
  journal = {The Journal of Chemical Physics},
  year = 2019,
}

@article{CTT100809961,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {More efficient screening of protein-protein complex model structures for reducing the number of candidates},
  journal = {Biophysics and Physicobiology},
  year = 2019,
}

@article{CTT100809959,
  author = {Kyoko Hanawa-Suetsugu and Yuzuru Itoh and Maisarah Ab Fatah and Tamako Nishimura and Kazuhiro Takemura and Kohei Takeshita and Satoru Kubota and Naoyuki Miyazaki and Wan Nurul Izzati Wan Mohamad Noor and Takehiko Inaba and Nhung Thi Hong Nguyen and Sayaka Hamada-Nakahara and Kayoko Oono-Yakura and Masashi Tachikawa and Kenji Iwasaki and Daisuke Kohda and Masaki Yamamoto and Akio Kitao and Atsushi Shimada and Shiro Suetsugu},
  title = {Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7},
  journal = {Nature Communications},
  year = 2019,
}

@article{CTT100809960,
  author = {Yasumasa Joti and Akio Kitao},
  title = {Cancellation between auto- and mutual correlation contributions of protein/water dynamics in terahertz time-domain spectra},
  journal = {Biophysics and Physicobiology},
  year = 2019,
}

@article{CTT100809969,
  author = {Yuichi Yokochi and Kazunori Sugiura and Kazuhiro Takemura and Keisuke Yoshida and Satoshi Hara and Ken-ichi Wakabayashi and Akio Kitao and Toru Hisabori},
  title = {Impact of key residues within chloroplast thioredoxin-f on recognition for reduction and oxidation of target proteins},
  journal = {Journal of Biological Chemistry},
  year = 2019,
}

@article{CTT100810107,
  author = {Justin Chan and Hong-Rui Lin and Kazuhiro Takemura and Kai-Chun Chang and Yuan-Yu Chang and Yasumasa Joti and Akio Kitao and Lee-Wei Yang},
  title = {An Efficient Timer and Sizer of Biomacromolecular Motions},
  journal = {Structure},
  year = 2019,
}

@article{CTT100809963,
  author = {Kento Shin and Duy Phuoc Tran and Kazuhiro Takemura and Akio Kitao and Kei Terayama and Koji Tsuda},
  title = {Enhancing Biomolecular Sampling with Reinforcement Learning: A Tree Search Molecular Dynamics Simulation Method},
  journal = {ACS Omega},
  year = 2019,
}

@article{CTT100809964,
  author = {Yasuhiro Onoue and Masayo Iwaki and Ai Shinobu and Yasutaka Nishihara and Hiroto Iwatsuki and Hiroyuki Terashima and Akio Kitao and Hideki Kandori and Michio Homma},
  title = {Essential ion binding residues for Na+ flow in stator complex of the Vibrio flagellar motor},
  journal = {Scientific Reports},
  year = 2019,
}

@article{CTT100809968,
  author = {Hiroshi Nakagawa and Yasumasa Joti and Akio Kitao and Osamu Yamamuro and Mikio Kataoka},
  title = {Universality and Structural Implications of the Boson Peak in Proteins},
  journal = {Biophysical Journal},
  year = 2019,
}

@article{CTT100809965,
  author = {Hiroaki Hata and Masayoshi Nishiyama and Akio Kitao},
  title = {Molecular dynamics simulation of proteins under high pressure: Structure, function and thermodynamics},
  journal = {Biochimica et Biophysica Acta (BBA) - General Subjects},
  year = 2019,
}

@article{CTT100809966,
  author = {Nick Matthews and Akio Kitao and Stephen Laycock and Steven Hayward},
  title = {Haptic-Assisted Interactive Molecular Docking Incorporating Receptor Flexibility},
  journal = {Journal of Chemical Information and Modeling},
  year = 2019,
}

@article{CTT100809967,
  author = {Yumi Inoue and Yuya Ogawa and Miki Kinoshita and Naoya Terahara and Masafumi Shimada and Noriyuki Kodera and Toshio Ando and Keiichi Namba and Akio Kitao and Katsumi Imada and Tohru Minamino},
  title = {Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus},
  journal = {Structure},
  year = 2019,
}

@article{CTT100784975,
  author = {Steven Hayward and Akio Kitao},
  title = {Multi-strand β-sheet of Alzheimer Aβ(1–40) folds to β-strip helix: implication for protofilament formation},
  journal = {Journal of Biomolecular Structure and Dynamics},
  year = 2019,
}

@article{CTT100809997,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Dissociation Process of a MDM2/p53 Complex Investigated by Parallel Cascade Selection Molecular Dynamics and the Markov State Model},
  journal = {The Journal of Physical Chemistry B},
  year = 2019,
}

@article{CTT100784976,
  author = {Ai Shinobu and Kazuhiro Takemura and Nobuyuki Matubayasi and Akio Kitao},
  title = {Refining evERdock: Improved selection of good protein-protein complex models achieved by MD optimization and use of multiple conformations},
  journal = {The Journal of Chemical Physics},
  year = 2018,
}

@article{CTT100773141,
  author = {Hisham M. Dokainish and Akio Kitao},
  title = {Similarities and Differences between Thymine(6–4)Thymine/Cytosine DNA Lesion Repairs by Photolyases},
  journal = {The Journal of Physical Chemistry B},
  year = 2018,
}

@article{CTT100773142,
  author = {Kazuhiro Takemura and Chika Sato and Akio Kitao},
  title = {ColDock: Concentrated Ligand Docking with All-Atom Molecular Dynamics Simulation},
  journal = {The Journal of Physical Chemistry B},
  year = 2018,
}

@article{CTT100809975,
  author = {Satoshi Yamashita and Misao Mizuno and Duy Phuoc Tran and Hisham Dokainish and Akio Kitao and Yasuhisa Mizutani},
  title = {Vibrational Energy Transfer from Heme through Atomic Contacts in Proteins},
  journal = {The Journal of Physical Chemistry B},
  year = 2018,
}

@article{CTT100761030,
  author = {Kazuhiro Takemura and Nobuyuki Matubayasi and Akio Kitao},
  title = {Binding free energy analysis of protein-protein docking model structures by evERdock},
  journal = {The Journal of Chemical Physics},
  year = 2018,
}

@article{CTT100761032,
  author = {Jacob B. Swadling and Akio Kitao},
  title = {Origins of biological function in DNA and RNA hairpin loop motifs from replica exchange molecular dynamics simulation},
  journal = {Physical Chemistry Chemical Physics},
  year = 2018,
}

@article{CTT100809977,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Protein-Ligand Dissociation Simulated by Parallel Cascade Selection Molecular Dynamics},
  journal = {Journal of Chemical Theory and Computation},
  year = 2018,
}

@article{CTT100748710,
  author = {Kazuhiro Takemura and Kyoko Hanawa-Suetsugu and Shiro Suetsugu and Akio Kitao},
  title = {Salt Bridge Formation between the I-BAR Domain and Lipids Increases Lipid Density and Membrane Curvature},
  journal = {Scientific Reports},
  year = 2017,
}

@article{CTT100773144,
  author = {Nick Matthews and Robert Easdon and Akio Kitao and Steven Hayward and Stephen Laycock},
  title = {High quality rendering of protein dynamics in space filling mode},
  journal = {Journal of Molecular Graphics & Modelling},
  year = 2017,
}

@article{CTT100748605,
  author = {Hisham M. Dokainish and Daichi Yamada and Tatsuya Iwata and Hideki Kandori and Akio Kitao},
  title = {Electron Fate and Mutational Robustness in the Mechanism of (6-4)Photolyase-Mediated DNA Repair},
  journal = {ACS Catalysis},
  year = 2017,
}

@article{CTT100748607,
  author = {Akio Kitao and Nishihara, Yasutaka},
  title = {Structure of the MotA/B Proton Channel.},
  journal = {Methods in molecular biology (Clifton, N.J.)},
  year = 2017,
}

@article{CTT100748612,
  author = {Akio Kitao and Kazuhiro Takemura},
  title = {High anisotropy and frustration: the keys to regulating protein function efficiently in crowded environments.},
  journal = {Current opinion in structural biology},
  year = 2017,
}

@article{CTT100748606,
  author = {Otani, Yuko and Watanabe, Satoshi and Ohwada, Tomohiko and Kitao, Akio and Akio Kitao},
  title = {Molecular Dynamics Study of Nitrogen-Pyramidalized Bicyclic beta-Proline Oligomers: Length-Dependent Convergence to Organized Structures},
  journal = {Journal of Physical Chemistry B},
  year = 2017,
}

@article{CTT100748609,
  author = {Taguchi, Junko and Kitao, Akio and Akio Kitao},
  title = {Dynamic profile analysis to characterize dynamics-driven allosteric sites in enzymes},
  journal = {Biophysics and Physicobiology},
  year = 2016,
}

@article{CTT100748608,
  author = {Dokainish, Hisham M. and Kitao, Akio and Akio Kitao},
  title = {Computational Assignment of the Histidine Protonation State in (6-4) Photolyase Enzyme and Its Effect on the Protonation Step},
  journal = {Acs Catalysis},
  year = 2016,
}

@article{CTT100748611,
  author = {Yamada, D. and Dokainish, H. M. and Iwata, T. and Yamamoto, J. and Ishikawa, T. and Todo, T. and Iwai, S. and Getzoff, E. D. and Kitao, A. and Kandori, H. and Akio Kitao},
  title = {Functional Conversion of CPD and (6-4) Photolyases by Mutation},
  journal = {Biochemistry},
  year = 2016,
}

@article{CTT100748610,
  author = {Deguchi, A. and Tomita, T. and Ohto, U. and Kazuhiro Takemura and Akio Kitao and Miyake, K. and Akashi-Takamura, S. and Maru, Y.},
  title = {Eritoran inhibits S100A8-mediated TLR4/MD-2 activation and tumor growth by changing the immune microenvironment},
  journal = {Oncogene},
  year = 2016,
}

@article{CTT100748614,
  author = {Maru, Yoshiro and Tomita, Takeshi and Deguchi, Atsuko and Ieguchi, Katsuaki and Takita, Morichika and Tsukahara, Fujiko and Takemura, Kazuhiro and Kitao, Akio and Gusovsky, Fabian and Akio Kitao},
  title = {Drug Targeting Based on a New Concept-Targeting Against TLR4 as an Example},
  journal = {Endocrine Metabolic & Immune Disorders-Drug Targets},
  year = 2015,
}

@article{CTT100748616,
  author = {Hayward, Steven and Kitao, Akio and Akio Kitao},
  title = {Monte Carlo Sampling with Linear Inverse Kinematics for Simulation of Protein Flexible Regions},
  journal = {Journal of Chemical Theory and Computation},
  year = 2015,
}

@article{CTT100748615,
  author = {Nishihara, Yasutaka and Kitao, Akio and Akio Kitao},
  title = {Gate-controlled proton diffusion and protonation-induced ratchet motion in the stator of the bacterial flagellar motor},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = 2015,
}

@article{CTT100748613,
  author = {Sakai, Taki and Matsumoto, Yotaro and Ishikawa, Minoru and Sugita, Kazuyuki and Hashimoto, Yuichi and Wakai, Nobuhiko and Kitao, Akio and Morishita, Era and Toyoshima, Chikashi and Hayashi, Tomoatsu and Akiyama, Tetsu and Akio Kitao},
  title = {Design, synthesis and structure-activity relationship studies of novel sirtuin 2 (SIRT2) inhibitors with a benzamide skeleton},
  journal = {Bioorganic & Medicinal Chemistry},
  year = 2015,
}

@article{CTT100748617,
  author = {Harada, Ryuhei and Kitao, Akio and Akio Kitao},
  title = {Nontargeted Parallel Cascade Selection Molecular Dynamics for Enhancing the Conformational Sampling of Proteins},
  journal = {Journal of Chemical Theory and Computation},
  year = 2015,
}

@article{CTT100746497,
  author = {Wakai N and Takemura K and Morita T and Kitao A},
  title = {Mechanism of Deep-Sea Fish α-Actin Pressure Tolerance Investigated by Molecular Dynamics Simulations.},
  journal = {},
  year = 2014,
}

@article{CTT100746499,
  author = {Takahashi, Nobuaki and Hamada-Nakahara, Sayaka and Itoh, Yuzuru and Takemura, Kazuhiro and Shimada, Atsushi and Ueda, Yoshifumi and Kitamata, Manabu and Matsuoka, Rei and Hanawa-Suetsugu, Kyoko and Senju, Yosuke and Mori, Masayuki X. and Kiyonaka, Shigeki and Kohda, Daisuke and Kitao, Akio and Mori, Yasuo and Suetsugu, Shiro and Akio Kitao},
  title = {TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P-2},
  journal = {Nature Communications},
  year = 2014,
}

@article{CTT100746498,
  author = {Yang, Lee-Wei and Kitao, Akio and Huang, Bang-Chieh and Go, Nobuhiro and Akio Kitao},
  title = {Ligand-Induced Protein Responses and Mechanical Signal Propagation Described by Linear Response Theories},
  journal = {Biophysical Journal},
  year = 2014,
}

@article{CTT100746503,
  author = {Yamamori, Yu and Kitao, Akio and Akio Kitao},
  title = {MuSTAR MD: Multi-scale sampling using temperature accelerated and replica exchange molecular dynamics},
  journal = {Journal of Chemical Physics},
  year = 2013,
}

@article{CTT100746504,
  author = {Harada, Ryuhei and Kitao, Akio and Akio Kitao},
  title = {Parallel cascade selection molecular dynamics (PaCS-MD) to generate conformational transition pathway},
  journal = {Journal of Chemical Physics},
  year = 2013,
}

@article{CTT100746501,
  author = {Omori, S. and Kitao, A. and Akio Kitao},
  title = {CyClus: A fast, comprehensive cylindrical interface approximation clustering/reranking method for rigid-body proteinprotein docking decoys},
  journal = {Proteins-Structure Function and Bioinformatics},
  year = 2013,
}

@article{CTT100746500,
  author = {Ishikawa, Takeshi and Burri, Raghunadha Reddy and Kamatari, Yuji O. and Sakuraba, Shun and Matubayasi, Nobuyuki and Kitao, Akio and Kuwata, Kazuo and Akio Kitao},
  title = {A theoretical study of the two binding modes between lysozyme and tri-NAG with an explicit solvent model based on the fragment molecular orbital method},
  journal = {Physical Chemistry Chemical Physics},
  year = 2013,
}

@article{CTT100746502,
  author = {Meshcheryakov, Vladimir A. and Kitao, Akio and Matsunami, Hideyuki and Samatey, Fadel A. and Akio Kitao},
  title = {Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins},
  journal = {Acta Crystallographica Section D-Biological Crystallography},
  year = 2013,
}

@article{CTT100746505,
  author = {Takemura K and Guo H and Sakuraba S and Matubayasi N and Kitao A},
  title = {Evaluation of protein-protein docking model structures using all-atom molecular dynamics simulations combined with the solution theory in the energy representation.},
  journal = {},
  year = 2012,
}

@article{CTT100746506,
  author = {Akio Kitao},
  title = {The fast-folding mechanism of villin headpiece subdomain studied by multiscale distributed computing},
  journal = {Journal of Chemical Theory and Computation},
  year = 2012,
}

@article{CTT100746507,
  author = {Akio Kitao},
  title = {Water model tuning for improved reproduction of rotational diffusion and NMR spectral density},
  journal = {Journal of Physical Chemistry B},
  year = 2012,
}

@article{CTT100746510,
  author = {Akio Kitao},
  title = {Erratum: Transform and relax sampling for highly anisotropic systems: Application to protein domain motion and folding (Journal of Chemical Physics (2011) 135 (045101))},
  journal = {Journal of Chemical Physics},
  year = 2011,
}

@article{CTT100746514,
  author = {Akio Kitao},
  title = {Transform and relax sampling for highly anisotropic systems: Application to protein domain motion and folding},
  journal = {Journal of Chemical Physics},
  year = 2011,
}

@article{CTT100746513,
  author = {Akio Kitao},
  title = {Screw motion regulates multiple functions of T4 phage protein gene product 5 during cell puncturing},
  journal = {Journal of the American Chemical Society},
  year = 2011,
}

@article{CTT100746512,
  author = {Akio Kitao},
  title = {Multi-Scale Free Energy Landscape calculation method by combination of coarse-grained and all-atom models},
  journal = {Chemical Physics Letters},
  year = 2011,
}

@article{CTT100746511,
  author = {Akio Kitao},
  title = {Exploring the folding free energy landscape of a β-hairpin miniprotein, chignolin, using multiscale free energy landscape calculation method},
  journal = {Journal of Physical Chemistry B},
  year = 2011,
}

@article{CTT100746509,
  author = {Akio Kitao},
  title = {Erratum: Multi-Scale Free Energy Landscape calculation method by combination of coarse-grained and all-atom models (Chemical Physics Letters (2011) 503 (145-152))},
  journal = {Chemical Physics Letters},
  year = 2011,
}

@article{CTT100746508,
  author = {Akio Kitao},
  title = {Enhanced resolution of molecular recognition to distinguish structurally similar molecules by different conformational responses of a protein upon ligand binding},
  journal = {Journal of Structural Biology},
  year = 2011,
}

@article{CTT100746517,
  author = {Akio Kitao},
  title = {Structure of the cytoplasmic domain of FlhA and implication for flagellar type III protein export},
  journal = {Molecular Microbiology},
  year = 2010,
}

@article{CTT100746518,
  author = {Akio Kitao},
  title = {The effect of end constraints on protein loop kinematics},
  journal = {Biophysical Journal},
  year = 2010,
}

@article{CTT100746515,
  author = {Akio Kitao},
  title = {Detecting coupled collective motions in protein by independent subspace analysis},
  journal = {Journal of Chemical Physics},
  year = 2010,
}

@article{CTT100746516,
  author = {Akio Kitao},
  title = {Mechanical unfolding of bacterial flagellar filament protein by molecular dynamics simulation},
  journal = {Journal of Molecular Graphics and Modelling},
  year = 2010,
}

@article{CTT100746521,
  author = {Akio Kitao},
  title = {Erratum: Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): Insights into functional dynamics (Bioinformatics (2009) vol. 25 (5) (606-614))},
  journal = {Bioinformatics},
  year = 2009,
}

@article{CTT100746520,
  author = {Akio Kitao},
  title = {DTA: Dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins},
  journal = {Bioinformatics},
  year = 2009,
}

@article{CTT100746519,
  author = {Akio Kitao},
  title = {Collective dynamics of periplasmic glutamine binding protein upon domain closure},
  journal = {Biophysical Journal},
  year = 2009,
}

@article{CTT100746523,
  author = {Akio Kitao},
  title = {Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): Insights into functional dynamics},
  journal = {Bioinformatics},
  year = 2009,
}

@article{CTT100746522,
  author = {Akio Kitao},
  title = {Multiple Markov transition matrix method: Obtaining the stationary probability distribution from multiple simulations},
  journal = {Journal of Computational Chemistry},
  year = 2009,
}

@article{CTT100746524,
  author = {Akio Kitao},
  title = {Hydration affects both harmonic and anharmonic nature of protein dynamics},
  journal = {Biophysical Journal},
  year = 2008,
}

@article{CTT100746527,
  author = {Akio Kitao},
  title = {Thermal unfolding simulations of bacterial flagellin: Insight into its refolding before assembly},
  journal = {Biophysical Journal},
  year = 2008,
}

@article{CTT100746526,
  author = {Akio Kitao},
  title = {Hydration-dependent protein dynamics revealed by molecular dynamics simulation of crystalline staphylococcal nuclease},
  journal = {Journal of Physical Chemistry B},
  year = 2008,
}

@article{CTT100746525,
  author = {Akio Kitao},
  title = {Hydration effect on low-frequency protein dynamics observed in simulated neutron scattering spectra},
  journal = {Biophysical Journal},
  year = 2008,
}

@article{CTT100748618,
  author = {Tadaomi Furuta and Fadel A. Samatey and Hideyuki Matsunami and Katsumi Imada and Keiichi Namba and Akio Kitao},
  title = {Gap compression/extension mechanism of bacterial flagellar hook as the molecular universal joint},
  journal = {J. Struct. Biol.},
  year = 2007,
}

@article{CTT100746528,
  author = {Akio Kitao},
  title = {Effects of water model and simulation box size on protein diffusions motions},
  journal = {Journal of Physical Chemistry B},
  year = 2007,
}

@article{CTT100746531,
  author = {Akio Kitao},
  title = {Picosecond fluctuating protein energy landscape mapped by pressure-temperature molecular dynamics simulation},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = 2007,
}

@article{CTT100746530,
  author = {Akio Kitao},
  title = {Non-Gaussian behavior of elastic incoherent neutron scattering profiles of proteins studied by molecular dynamics simulation},
  journal = {Physical Review E - Statistical, Nonlinear, and Soft Matter Physics},
  year = 2007,
}

@article{CTT100746537,
  author = {Akio Kitao},
  title = {Switch interactions control energy frustration and multiple flagellar filament structures},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = 2006,
}

@article{CTT100746535,
  author = {Akio Kitao},
  title = {Molecular dynamics simulations of NAD+-induced domain closure in horse liver alcohol dehydrogenase},
  journal = {Biophysical Journal},
  year = 2006,
}

@article{CTT100746536,
  author = {Akio Kitao},
  title = {Protein energy landscape and dynamics studied by molecular simulations and neutron scattering},
  journal = {Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.},
  year = 2006,
}

@article{CTT100746534,
  author = {Akio Kitao},
  title = {Hydration-coupled protein boson peak measured by incoherent neutron scattering},
  journal = {Physica B: Condensed Matter},
  year = 2006,
}

@article{CTT100746533,
  author = {Akio Kitao},
  title = {Dynamical heterogeneity of protein dynamics studied by elastic incoherent neutron scattering and molecular simulations},
  journal = {Materials Science and Engineering A},
  year = 2006,
}

@article{CTT100746532,
  author = {Akio Kitao},
  title = {Amplitudes and directions of internal protein motions from a JAM analysis of 15N relaxation data},
  journal = {Magnetic Resonance in Chemistry},
  year = 2006,
}

@article{CTT100746540,
  author = {Akio Kitao},
  title = {Universal joint of biological supramolecule: mechanism of bacterial flagellar hook investigated in silico},
  journal = {Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme},
  year = 2005,
}

@article{CTT100746538,
  author = {Akio Kitao},
  title = {Protein boson peak originated from hydration-related multiple minima energy landscape},
  journal = {Journal of the American Chemical Society},
  year = 2005,
}

@article{CTT100746539,
  author = {Akio Kitao},
  title = {Structure, function and self-assembly of the bacterial flagellum},
  journal = {Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme},
  year = 2005,
}

@article{CTT100746542,
  author = {Akio Kitao},
  title = {Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism},
  journal = {Nature},
  year = 2004,
}

@article{CTT100746541,
  author = {Akio Kitao},
  title = {Molecular simulation study to examine the possibility of detecting collective motion in protein by inelastic neutron scattering},
  journal = {Physica B: Condensed Matter},
  year = 2004,
}

@article{CTT100784977,
  author = {Akio Kitao},
  title = {How can free energy component analysis explain the difference in protein stability caused by amino acid substitutions? Effect of three hydrophobic mutations at the 56th residue on the stability of human lysozyme},
  journal = {Protein Engineering},
  year = 2003,
}

@article{CTT100746544,
  author = {Akio Kitao},
  title = {The Effects of Solvent and Anharmonicity on Incoherent Inelastic Neutron Scattering Spectra of Proteins},
  journal = {},
  year = 2002,
}

@article{CTT100746548,
  author = {Akio Kitao},
  title = {Multidimensional replica-exchange method for free-energy calculations},
  journal = {},
  year = 2000,
}

@article{CTT100746545,
  author = {Akio Kitao},
  title = {A Novel Method to Investigate Functionally-relevant Protein Dynamics.},
  journal = {},
  year = 2000,
}

@article{CTT100746546,
  author = {Akio Kitao},
  title = {A space-time structure determination of human CD2 reveals the CD58-binding mode},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = 2000,
}

@article{CTT100746547,
  author = {Akio Kitao},
  title = {Molecular dynamics simulation shows large volume fluctuations of proteins},
  journal = {European Biophysics Journal},
  year = 2000,
}

@article{CTT100746549,
  author = {Akio Kitao},
  title = {Investigating protein dynamics in collective coordinate space},
  journal = {Current Opinion in Structural Biology},
  year = 1999,
}

@article{CTT100746550,
  author = {Akio Kitao},
  title = {Computational analysis of thermal stability: effect of Ile→Val mutations in human lysozyme},
  journal = {},
  year = 1998,
}

@article{CTT100746554,
  author = {Akio Kitao},
  title = {Protein electron transfer reorganization energy spectrum from normal mode analysis. 1. Theory},
  journal = {Journal of Physical Chemistry B},
  year = 1998,
}

@article{CTT100746555,
  author = {Akio Kitao},
  title = {Protein electron transfer reorganization energy spectrum from normal mode analysis. 2. Application to ru-modified cytochrome c},
  journal = {Journal of Physical Chemistry B},
  year = 1998,
}

@article{CTT100746552,
  author = {Akio Kitao},
  title = {Energy landscape of a native protein: Jumping-among-minima model},
  journal = {Proteins: Structure, Function and Genetics},
  year = 1998,
}

@article{CTT100746551,
  author = {Akio Kitao},
  title = {Dependence of protein stability on the structure of the denatured state: Free energy calculations of 156V mutation in human lysozyme},
  journal = {Biophysical Journal},
  year = 1998,
}

@article{CTT100746553,
  author = {Akio Kitao},
  title = {Improved protein free energy calculation by more accurate treatment of nonbonded energy: Application to chymotrypsin inhibitor 2, V57A},
  journal = {Proteins: Structure, Function and Genetics},
  year = 1998,
}

@article{CTT100746556,
  author = {Akio Kitao},
  title = {Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme},
  journal = {Proteins: Structure, Function and Genetics},
  year = 1997,
}

@article{CTT100746557,
  author = {Akio Kitao},
  title = {Harmonicity and anharmonicity in protein dynamics: A normal mode analysis and principal component analysis},
  journal = {Proteins: Structure, Function and Genetics},
  year = 1995,
}

@article{CTT100746560,
  author = {Akio Kitao},
  title = {Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis},
  journal = {Protein Science},
  year = 1994,
}

@article{CTT100746558,
  author = {Akio Kitao},
  title = {A collective motion description of the 310-/α-helix transition: Implications for a natural reaction coordinate},
  journal = {Journal of the American Chemical Society},
  year = 1994,
}

@article{CTT100746559,
  author = {Akio Kitao},
  title = {Comparison of normal mode analyses on a small globular protein in dihedral angle space and Cartesian coordinate space},
  journal = {Biophysical Chemistry},
  year = 1994,
}

@article{CTT100746561,
  author = {Akio Kitao},
  title = {Effect of solvent on collective motions in globular protein},
  journal = {Journal of Molecular Biology},
  year = 1993,
}

@article{CTT100746563,
  author = {Akio Kitao},
  title = {Effects of solvent on the conformation and the collective motions of a protein. 3. Free energy analysis by the extended RISM theory},
  journal = {Journal of Physical Chemistry},
  year = 1993,
}

@article{CTT100746562,
  author = {Akio Kitao},
  title = {Effects of solvent on the conformation and the collective motions of a protein. 2. Structure of hydration in melittin},
  journal = {Journal of Physical Chemistry},
  year = 1993,
}

@article{CTT100746565,
  author = {Akio Kitao},
  title = {The effects of solvent on the conformation and the collective motions of protein: Normal mode analysis and molecular dynamics simulations of melittin in water and in vacuum},
  journal = {Chemical Physics},
  year = 1991,
}

@article{CTT100746564,
  author = {Kitao, A. and Go, N. and Akio Kitao},
  title = {CONFORMATIONAL DYNAMICS OF POLYPEPTIDES AND PROTEINS IN THE DIHEDRAL ANGLE SPACE AND IN THE CARTESIAN COORDINATE SPACE - NORMAL MODE ANALYSIS OF DECA-ALANINE},
  journal = {Journal of Computational Chemistry},
  year = 1991,
}

@inproceedings{CTT100916846,
  author = {Akio Kitao},
  title = {Molecular mechanisms of structure support and smooth rotation in the bushing/rod complex of bacterial flagella},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916845,
  author = {Duy Phuoc Tran and Kitao Akio},
  title = {Unveiling the mGLU1 dimer dynamics during partially-active to inactive state transition},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916836,
  author = {Akio Kitao},
  title = {Conformational Dynamics and Association/Dissociation Processes of Biological Macromolecules Investigated by Advanced Molecular Simulation},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916837,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {An efficient screening, an accurate evaluation, and a simple prediction of protein complex structures},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916834,
  author = {Akio Kitao},
  title = {Mechanisms of Bacterial flagellar rotation and roles of water as lubricant},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916843,
  author = {北尾彰朗},
  title = {LPリング内のロッドの回転シミュレーション},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916844,
  author = {萩本紗理 and 北尾彰朗},
  title = {Gタンパク質アデノシンA2a受容体複合体活性化ダイナミクスの解明},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916842,
  author = {北尾彰朗 and 山口智子 and 牧野文信 and 宮田知子 and 南野徹 and 加藤貴之 and 難波啓一},
  title = {べん毛LPリング・ロッド系の回転シミュレーション},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916841,
  author = {Tegar Nurwahyu Wijaya and Akio Kitao},
  title = {The Effect of Tricaprylin Surface on The Lid Region Dynamics of Candida antarctica Lipase B},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916847,
  author = {Duy Phuoc Tran and Sari Hagimoto and Akio Kitao},
  title = {Unveiling the dynamics of Adenosine A2a receptor coupling to the G proteins: a molecular dynamics simulation study},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916839,
  author = {北尾彰朗},
  title = {タンパク質で構築された軸と軸受け：ロッドとLPリングが働く仕組み},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916838,
  author = {Akio Kitao},
  title = {Conformational Change and Association/Dissociation of Proteins investigated by Parallel Cascade Selection Molecular Dynamics},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917159,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Revealing the functional roles of the complex formation/deformation of tumor suppressor p53 protein},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916835,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Sampling the conformational transition of the monomer of Nsp15 of the SARS-nCoV2 gives a hint to inhibit its hexamer},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916840,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {How the bacterial Flagellar Motor stator works: an insight from molecular dynamics simulation},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916833,
  author = {Akio Kitao},
  title = {Rotational mechanisms of bacterial flagellumand roles of water},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100895164,
  author = {北尾彰朗},
  title = {Conformational Change and Dissociation/Association of Biological Macromolecules Investigated by Parallel Cascade Selection Molecular Dynamics and Markov State Model},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100917158,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Revealing the complex formation/deformation process of antitumor suppressor p53 protein complexes in functioning},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100882134,
  author = {中矢光 and TranPhuoc Duy and 北尾彰朗},
  title = {並列カスケード選択分子動力学法を用いた生体分子の解離過程解析},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100875332,
  author = {Darin Flamandita and Akio Kitao},
  title = {Substrate Unbinding Pathways from Candida rugosa Lipase Investigated by Parallel Cascade Selections Molecular Dynamics and the Markov State Model},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100867453,
  author = {Mariko Kojima and Yuki Hishikawa and Satoshi Abe and Tadaomi Furuta and Duy Phuoc Tran and Akio Kitao and Takafumi Ueno},
  title = {Dynamics structural analysis of  miniprotein by in-cell crystal engineering},
  booktitle = {},
  year = 2022,
}

@inproceedings{CTT100874806,
  author = {Akio Kitao},
  title = {Transport mechanisms of ions, peptides and proteins through the biological membrane},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874805,
  author = {Akio Kitao},
  title = {Roles of hydration/dehydration for dissociation, association and stabilization of protein complexes},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874803,
  author = {Akio Kitao},
  title = {Molecular movie of protein association/dissociation dynamics},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874812,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874811,
  author = {Duy Tran and Akio Kitao},
  title = {DNA bending enhances the dissociation of tetrameric p53’s coredomains},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874809,
  author = {Ryunosuke Kiuchi and Kazuhiro Takemura and Akio Kitao},
  title = {Application of ColDock to docking of cryptic pockets},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874802,
  author = {Akio Kitao},
  title = {PaCS-MD/MSM to investigate protein motions and association/dissociation of protein complexes},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874820,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Binding free energy calculation with dPaCS-MD/MSM},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874807,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Atomic mechanism of the complete association of intrinsically disordered peptide to protein},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874800,
  author = {Akio Kitao},
  title = {Simulated dissociation/association dynamics between proteins and other molecules},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874819,
  author = {Duy Tran and Akio Kitao},
  title = {Predicting the complex conformations of protein/intrinsically disordered peptide complexes},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874813,
  author = {宮澤 佳希 and Tran Phuoc Duy and 竹村 和浩 and 北尾 彰朗},
  title = {Parallel Cascade Selection Molecular Dynamics/Markov State Model によるタンパク質－タンパク質複合体の結合親和性評価 (Evaluation of binding affinity for protein-protein complexes by Parallel Cascade Selection Molecular Dynamics/Markov State Model},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874818,
  author = {チャン フ ズイ and 畑 宏明 and 中矢 光 and 北尾彰朗},
  title = {Benchmarking the free energy calculation of PaCS-MD/MSM},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874817,
  author = {竹村 和浩 and 北尾 彰朗},
  title = {PPI-ColDock 法を用いた蛋白質‐ 蛋白質複合体形成},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874816,
  author = {Marzouk and Akio Kitao},
  title = {Investigating the dissociation process and kinetic rates of DBD-p53/DNA complex by PaCS-MD and MSM},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874814,
  author = {Wijaya Tegar N. and 北尾彰朗},
  title = {Dynamics of Close-Open State of CALB Obtained by Parallel Cascade Molecular Dynamics Simulation and The 2.Wijaya Tegar N.、北尾彰朗「Dynamics of Close-Open State of CALB Obtained by Parallel Cascade Molecular Dynamics Simulation and The Markov State Model},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851915,
  author = {北尾彰朗},
  title = {インシリコシミュレーションで探るタンパク質複合体の結合親和性とキネティックス},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851914,
  author = {北尾彰朗},
  title = {SARS-CoV-2 エンドリボヌクレアーゼのオリゴマー化阻害},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100847106,
  author = {Mariko Kojima and Yuki Hishikawa and Satoshi Abe and Tadaomi Furuta and Duy Phuoc Tran and Akio Kitao and Takafumi Ueno},
  title = {Energy Analysis of Miniprotein by in Vivo Protein Crystallization},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851869,
  author = {Tegar Nurwahyu Wijaya and Akio Kitao},
  title = {Dynamics of Close-Open State of Candida antarctica Lipase B Obtained by Parallel Cascade Molecular Dynamics Simulation and The Markov State Model},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851904,
  author = {尾川拓巳 and TranPhuoc Duy and 藤井 高志 and 難波 啓一 and 北尾彰朗},
  title = {PaCS-MDによるアクトミオシンの結合解離予測},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851900,
  author = {宮澤佳希 and TranPhuoc Duy and 竹村和浩 and 北尾彰朗},
  title = {PaCS-MD/MSM を用いたタンパク質-タンパク質複合体の結合親和性評価},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851895,
  author = {平悠太 and TranPhuoc Duy and 北尾彰朗},
  title = {分子動力学計算によるp53-C 末端部位のDNA 結合機構の解明},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851892,
  author = {平悠太 and TranPhuoc Duy and 北尾彰朗},
  title = {分子動力学計算によるp53-C 末端部位のDNA 結合機構の解明},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851889,
  author = {Marzouk and Akio Kitao},
  title = {Investigating the dissociation process of DBD-p53/DNA complex by PaCS-MD and MSM},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851887,
  author = {宮澤佳希 and TranPhuoc Duy and 竹村和浩 and 北尾彰朗},
  title = {PaCS-MD/MSM を用いたタンパク質複合体の速度定数評価},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851882,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100853525,
  author = {北尾彰朗},
  title = {高速分子動画を補完する構造変化の自由エネルギー地形と経路・流量の解析},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851912,
  author = {北尾彰朗},
  title = {SARS-CoV-2タンパク質のオリゴマー化を阻害する薬剤候補分子の探索},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851880,
  author = {Yoshiki Miyazawa and Duy Phuoc Tran and Kazuhiro Takemura and Akio Kitao},
  title = {Protein-protein complex dissociation simulated by Parallel Cascade Selection Molecular Dynamics},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851871,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Simulating the association/dissociation process of flexible protein complexes},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851870,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851913,
  author = {北尾彰朗},
  title = {長時間ダイナミクス法と 標的分子ネットワーク},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100770131,
  author = {Mizuki Tabata and Hisham Dokainish and Keisuke Yamaguchi and Akio Kitao and Shun-ichi Ishiuchi and Masaaki Fujii},
  title = {GAS PHASE SPECTROSCOPY ON HYDRATED CLUSTERS OF OXYTOCIN BY ELECTROSPRAY IONIZATION / COLD ION TRAP TECHNIQUE},
  booktitle = {},
  year = 2018,
}

@misc{CTT100916743,
  author = {畑 宏明 and 北尾 彰朗},
  title = {高圧力による細菌べん毛モーターの回転制御},
  year = 2023,
}

@misc{CTT100875328,
  author = {Akio Kitao},
  title = {Principal Component Analysis and Related Methods for Investigating the Dynamics of Biological Macromolecules},
  year = 2022,
}

@misc{CTT100875329,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Calculation of Binding Free Energy and Kinetic Rates with Flexible Protein Docking},
  year = 2021,
}

@misc{CTT100893719,
  author = {北尾 彰朗},
  title = {東京工業大学生命理工学院 北尾研究室},
  year = 2021,
}

@misc{CTT100893718,
  author = {北尾 彰朗},
  title = {バイオ分野での量子コンピュータへの期待},
  year = 2020,
}

@misc{CTT100851906,
  author = {北尾彰朗},
  title = {バイオ分野での量子コンピュータへの期待},
  year = 2020,
}

@misc{CTT100851910,
  author = {Duy Phuoc Tran and Hiroaki Hata and Takumi Ogawa and Yuta Taira and Akio Kitao},
  title = {PaCS-MD/MSM: Parallel Cascade Selection Molecular Dynamic Simulation in Combination with Markov State Model as an Efficient non-Bias Sampling Method},
  year = 2020,
}

@misc{CTT100893721,
  author = {Tran Duy Phuoc and Hata Hiroaki and Ogawa Takumi and Taira Yuta and Kitao Akio and 北尾彰朗},
  title = {最近の研究から PaCS-MD/MSM : Parallel Cascade Selection Molecular Dynamic Simulation in Combination with Markov State Model as an Efficient non-Bias Sampling Method},
  year = 2020,
}

@misc{CTT100893722,
  author = {Tran Duy Phuoc and Hata Hiroaki and Ogawa Takumi and Taira Yuta and Kitao Akio and 北尾彰朗},
  title = {最近の研究から PaCS-MD/MSM : Parallel Cascade Selection Molecular Dynamic Simulation in Combination with Markov State Model as an Efficient non-Bias Sampling Method},
  year = 2020,
}

@misc{CTT100916803,
  author = {竹村 和浩 and 畑 宏明 and 北尾 彰朗},
  title = {タンパク質複合体構造の形成・解離メカニズムと予測},
  year = 2019,
}

@misc{CTT100761033,
  author = {Akio Kitao and Hiroaki Hata},
  title = {Molecular dynamics simulation of bacterial flagella},
  year = 2018,
}