@article{CTT100863094,
  author = {Rei Kajitani and Hideki Noguchi and Yasuhiro Gotoh and Yoshitoshi Ogura and Dai Yoshimura and Miki Okuno and Atsushi Toyoda and Tomomi Kuwahara and Tetsuya Hayashi and Takehiko Itoh},
  title = {MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features},
  journal = {Nucleic Acids Research},
  year = 2021,
}

@article{CTT100852239,
  author = {Naohisa Wada and Hideaki Yuasa and Rei Kajitani and Yasuhiro Gotoh and Yoshitoshi Ogura and Dai Yoshimura and Atsushi Toyoda and Sen-Lin Tang and Yukihiro Higashimura and Hugh Sweatman and Zac Forsman and Omri Bronstein and Gal Eyal and Nalinee Thongtham and Takehiko Itoh and Tetsuya Hayashi and Nina Yasuda},
  title = {A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of thorns starfish, in the Indo-Pacifc},
  journal = {Microbiome},
  year = 2020,
}

@article{CTT100852372,
  author = {Rei Kajitani and Dai Yoshimura and Yoshitoshi Ogura and Yasuhiro Gotoh and Tetsuya Hayashi and Takehiko Itoh},
  title = {Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error- removal process},
  journal = {DNA Research},
  year = 2020,
}

@article{CTT100852414,
  author = {Keiji Nakamura and Kazunori Murase and Mitsuhiko P. Sato and Atsushi Toyoda and Takehiko Itoh and Jacques Georges Mainil and Denis Piérard and Shuji Yoshino and Keiko Kimata and Junko Isobe and Kazuko Seto and Yoshiki Etoh and Hiroshi Narimatsu and Shioko Saito and Jun Yatsuyanagi and Kenichi Lee and Sunao Iyoda and Makoto Ohnishi and Tadasuke Ooka and Yasuhiro Gotoh and Yoshitoshi Ogura and Tetsuya Hayashi},
  title = {Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28},
  journal = {Microbial Genomics},
  year = 2020,
}

@article{CTT100853168,
  author = {Mitsuhiko P. Sato and Yoshitoshi Ogura and Keiji Nakamura and Ruriko Nishida and Yasuhiro Gotoh and Masahiro Hayashi and Junzo Hisatsune and Motoyuki Sugai and Itoh Takehiko and Tetsuya Hayashi},
  title = {Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes},
  journal = {DNA Research},
  year = 2019,
}

@article{CTT100853280,
  author = {Dai Yoshimura and Rei Kajitani and Yasuhiro Gotoh and Katsuyuki Katahira and Miki Okuno and Yoshitoshi Ogura and Tetsuya Hayashi and Takehiko Itoh},
  title = {Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP},
  journal = {Microbial Genomics},
  year = 2019,
}

@article{CTT100853289,
  author = {Osamu Sawada and Yasuhiro Gotoh and Takako Taniguchi and Shota Furukawa and Dai Yoshimura and Satomi Sasaki and Haruki Shida and Yoshihiro Kusunoki and Tsuyoshi Yamamura and Ken Furuya and Takehiko Itoh and Tetsuya Horita and Tetsuya Hayashi and Naoaki Misawa},
  title = {Genome Sequencing Verifies Relapsed Infection of  Helicobacter cinaedi},
  journal = {Open Forum Infectious Diseases},
  year = 2019,
}

@article{CTT100786570,
  author = {Yoshitoshi Ogura and Kazuko Seto and Yo Morimoto and Keiji Nakamura and Mitsuhiko P. Sato and Yasuhiro Gotoh and Takehiko Itoh and Atsushi Toyoda and Makoto Ohnishi and Tetsuya Hayashi},
  title = {Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a},
  journal = {Emerging infectious diseases},
  year = 2018,
}

@article{CTT100786550,
  author = {Yoshitoshi Ogura and Yasuhiro Gotoh and Takehiko Itoh and Mitsuhiko P. Sato and Kazuko Seto and Shyuji Yoshino and Junko Isobe and Yoshiki Etoh and Mariko Kurogi and Keiko Kimata and Eriko Maeda and Denis Pierard and Masahiro Kusumoto and Masato Akiba and Kiyoshi Tominaga and Yumi Kirino and Yuki Kato and Katsuhiko Shirahige and Tadasuke Ooka and Nozomi Ishijima and Ken-ichi Lee and Sunao Iyoda and Jacques Georges Mainil and Tetsuya Hayashi},
  title = {Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages},
  journal = {Microbial genomics},
  year = 2017,
}

@inproceedings{CTT100917403,
  author = {吉田 悠 and 西村 陽介 and 伊藤 萌 and 長谷川 万純 and 髙野 剛史 and 後藤 恭宏 and 伊藤 武彦 and 林 哲也 and 吉澤 晋},
  title = {センジュナマコ（Scotoplanes sp.）体壁・管足の細菌叢を優占する細菌 の発見とゲノム解析},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100851546,
  author = {服部淳 and 吉村大 and 谷口愛樹 and 林哲也 and 伊藤武彦},
  title = {Comprehensive detection of insertion sequences in bacterial genomes},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100767027,
  author = {吉村⼤ and 後藤 恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を⽤いた近縁菌株間⾼精度SNP検出パイプラインBactSNPの開発},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100767026,
  author = {梶⾕嶺 and 小椋義俊 and 後藤恭宏 and 林哲也 and 伊藤武彦},
  title = {10X-Linked-reads、Mate-pairを活⽤したメタゲノムアセンブリ⼿法の開発},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100786625,
  author = {湯淺英知 and 梶谷嶺 and 髙橋和希 and 吉村大 and 小椋義俊 and Zac Forsman and Nalinee Thongtham and Niphon Phongsuwan and Coralie Taquet and Marc Taquet and 林哲也 and 伊藤武彦 and 安田仁奈},
  title = {異所的に種分化したオニヒトデ種間での受精遺伝子の進化},
  booktitle = {},
  year = 2017,
}