@article{CTT100766243,
  author = {Masanori Kakuta and Shuji Suzuki and Kazuki Izawa and Takashi Ishida and Yutaka Akiyama},
  title = {A Massively Parallel Sequence Similarity Search for Metagenomic Sequencing Data},
  journal = {International Journal of Molecular Sciences},
  year = 2017,
}

@article{CTT100766245,
  author = {Shuji Suzuki and Takashi Ishida and Masahito Ohue and Masanori Kakuta and Yutaka Akiyama},
  title = {GHOSTX: A Fast Sequence Homology Search Tool for Functional Annotation of Metagenomic Data},
  journal = {Methods in Molecular Biology(Protein Function Prediction)},
  year = 2017,
}

@article{CTT100738036,
  author = {Shuji Suzuki and Masanori Kakuta and Takashi Ishida and Yutaka Akiyama},
  title = {GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering},
  journal = {PLOS ONE},
  year = 2016,
}

@article{CTT100684743,
  author = {Suzuki S and Kakuta M and Ishida T and Akiyama Y.},
  title = {Faster sequence homology searches by clustering subsequences},
  journal = {Bioinformatics},
  year = 2015,
}

@article{CTT100677438,
  author = {Takehiro Shimoda and Shuji Suzuki and Masahito Ohue and Takashi Ishida and Yutaka Akiyama.},
  title = {Protein-Protein Docking on Hardware Accelerators : Comparison of GPU and MIC Architectures},
  journal = {BMC Systems Biology},
  year = 2015,
}

@article{CTT100684742,
  author = {Ohue, M. and Shimoda, T. and Suzuki, S. and Matsuzaki, Y. and Ishida, T. and Akiyama, Y.},
  title = {MEGADOCK 4.0: an ultra–high-performance protein–protein docking software for heterogeneous supercomputers},
  journal = {Bioinformatics},
  year = 2014,
}

@article{CTT100684741,
  author = {Suzuki, S and Ishida, T and Akiyama, Y},
  title = {GHOSTX: An improved sequence homology search algorithm using a query suffix array and a database suffix array},
  journal = {PLoS ONE},
  year = 2014,
}

@article{CTT100676869,
  author = {Satoshi Matsuoka and Hitoshi Sato and Osamu Tatebe and Michihiro Koibuchi and Ikki Fujiwara and Shuji Suzuki and Masanori Kakuta and Takashi Ishida and Yutaka Akiyama and Toyotaro Suzumura and Koji Ueno and Hiroki Kanezashi and Takemasa Miyoshi.},
  title = {Extreme Big Data (EBD): Next Generation Big Data Infrastructure Technologies Towards Yottabyte/Year},
  journal = {Supercomputing frontiers and innovations},
  year = 2014,
}

@article{CTT100636180,
  author = {Shuji Suzuki and Takashi Ishida and Ken Kurokawa and Yutaka Akiyama},
  title = {GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics},
  journal = {PLoS ONE},
  year = 2012,
}

@inproceedings{CTT100715119,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Takashi Ishida and Yutaka Akiyama},
  title = {A comparative study of GPU and MIC accelerations in fast Fourier transform-based protein-protein docking},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100684652,
  author = {Shuji Suzuki and Masanori Kakuta and Takashi Ishida and Yutaka Akiyama},
  title = {GHOSTZ-GPU: Fast Protein Sequence Homology Search on GPUs},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715151,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra–high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100684746,
  author = {Kakuta, M. and Suzuki, S. and Ishida, T. and Akiyama, Y.},
  title = {GHOST-MP: A Massively Parallel Biological Sequence Similarity Search for Metagenomics using OpenMP and MPI},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100677921,
  author = {Zhang Chaojie and Koichi Shirahata and Shuji Suzuki and Yutaka Akiyama and Satoshi Matsuoka},
  title = {Performance Analysis of MapReduce Implementations for High Performance Homology Search},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715153,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra–high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715154,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {The MEGADOCK Project: high-performance protein-protein interaction prediction tools on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715175,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {Bioinformatics},
  year = 2014,
}

@inproceedings{CTT100715157,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {The MEGADOCK Project: high-performance protein-protein interaction prediction tools on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100669644,
  author = {Shuji Suzuki and Takashi Ishida and Yutaka Akiyama},
  title = {Accelerating identification of frequent k-mers in DNA sequences with GPU},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100666854,
  author = {大上雅史 and 下田雄大 and 松崎由理 and 内古閑伸之 and 鈴木脩司 and 石田貴士 and 秋山泰},
  title = {MEGADOCK 4.0: mega-dock per dayへの道のり},
  booktitle = {生命情報科学若手の会 第5回研究会},
  year = 2014,
}

@inproceedings{CTT100669690,
  author = {渡部翔 and 鈴木脩司 and 石田貴士 and 秋山泰},
  title = {GPGPUを用いた高速な配列相同性検索の圧縮アミノ酸を用いたアルゴリズム改良},
  booktitle = {情報処理学会研究報告},
  year = 2013,
}

@inproceedings{CTT100666832,
  author = {Takehiro Shimoda and Takashi Ishida and Shuji Suzuki and Masahito Ohue and Yutaka Akiyama},
  title = {MEGADOCK-GPU: Acceleration of Protein-Protein Docking Calculation on GPUs},
  booktitle = {Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine 2013 (ACM-BCB 2013)},
  year = 2013,
}

@inproceedings{CTT100666835,
  author = {Takehiro Shimoda and Takashi Ishida and Shuji Suzuki and Masahito Ohue and Yutaka Akiyama},
  title = {MEGADOCK-GPU: Acceleration of Protein-Protein Docking Calculation on GPUs},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100666850,
  author = {下田雄大 and 石田貴士 and 鈴木脩司 and 大上雅史 and 秋山泰},
  title = {MEGADOCK-GPU: GPUによるタンパク質間ドッキング計算の高速化},
  booktitle = {GTC Workshop Japan 2013},
  year = 2013,
}

@inproceedings{CTT100669650,
  author = {渡部翔 and 鈴木脩司 and 石田貴士 and 秋山泰},
  title = {GPUを用いた配列相同性検索ツールGHOSTMの圧縮アミノ酸による高速化},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100669692,
  author = {鈴木脩司 and 石田貴士 and 秋山泰},
  title = {データベースの部分文字列クラスタリングによるアミノ酸配列相同性検索の高速化},
  booktitle = {情報処理学会研究報告},
  year = 2013,
}

@inproceedings{CTT100669651,
  author = {Shuji Suzuki and Takashi Ishida and Yutaka Akiyama},
  title = {An Ultra-fast Computing Pipeline for Metagenome Analysis with GPUs},
  booktitle = {},
  year = 2013,
}

@inproceedings{CTT100664759,
  author = {鈴木脩司 and 石田貴士 and 秋山 泰},
  title = {Suffix arrayを用いた高速な配列相同性検索の改良とエピゲノム解析への対応},
  booktitle = {情報処理学会研究報告},
  year = 2012,
}

@inproceedings{CTT100630509,
  author = {坂田幸佑 and 鈴木脩司 and 石田貴士 and 秋山泰},
  title = {GPU を用いた配列相同性検索ツールの マルチGPU 向け最適化},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100778872,
  author = {Hiroya Nagao and Shuji Suzuki and Kazuyuki Shudo},
  title = {A 3D Visualization System for Structured Overlays},
  booktitle = {Proc. 11th IEEE Int'l Conference on Peer-to-Peer Computing (IEEE P2P'11)},
  year = 2011,
}

@inproceedings{CTT100633793,
  author = {鈴木 脩司 and 石田 貴士 and 秋山 泰},
  title = {マルチCPUコアとGPUを用いた高速な配列相同性検索},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100633791,
  author = {Shuji Suzuki and Takashi Ishida and Yutaka Akiyama},
  title = {Improvement of a fast homology search tool on GPUs with suffix array},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100624995,
  author = {鈴木脩司 and 石田貴士 and 秋山 泰},
  title = {GPUを用いた高速な配列相同性検索のsuffix arrayによる改良},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100625002,
  author = {坂田幸佑 and 鈴木脩司 and 石田貴士 and 秋山 泰},
  title = {GPU配列相同性検索ツールのマルチGPU向け最適化と長断片への対応},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100622421,
  author = {鈴木 脩司 and 石田 貴士 and 秋山 泰},
  title = {FM-indexを用いた高速な配列相同性検索ツールの開発},
  booktitle = {情報処理学会研究報告バイオ情報学(BIO)},
  year = 2010,
}

@inproceedings{CTT100622652,
  author = {鈴木脩司 and 石田貴士 and 秋山泰},
  title = {GPUによるDNA断片配列の高速マッピング},
  booktitle = {情報処理学会研究報告バイオ情報学(BIO)},
  year = 2010,
}

@inproceedings{CTT100622653,
  author = {鈴木脩司 and 石田貴士 and 秋山泰},
  title = {GPUによるDNA断片配列の高速マッピング},
  booktitle = {先進的計算基盤システムシンポジウムSACSIS2010論文集},
  year = 2010,
}

@inproceedings{CTT100593493,
  author = {Shuji Suzuki and Yutaka Akiyama},
  title = {Ultra fast short sequence alignment on GPU},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@misc{CTT100633795,
  author = {秋山 泰 and 石田 貴士 and 角田将典 and 鈴木脩司},
  title = {次世代ＤＮＡシークエンサデータの超高速解析},
  year = 2011,
}

@misc{CTT100682784,
  author = {鈴木脩司},
  title = {大量メタゲノム情報に対するアミノ酸配列相同性検索の高速化},
  year = 2015,
}

@misc{CTT100682805,
  author = {Shuji Suzuki},
  title = {Faster Protein Sequence Homology Searches for Large-scale Metagenomic Data},
  year = 2015,
}

@misc{CTT100698390,
  author = {Shuji Suzuki},
  title = {Faster Protein Sequence Homology Searches for Large-scale Metagenomic Data},
  year = 2015,
}



@phdthesis{CTT100682784,
  author = {鈴木脩司},
  title = {大量メタゲノム情報に対するアミノ酸配列相同性検索の高速化},
  school = {東京工業大学},
  year = 2015,
}

@phdthesis{CTT100682805,
  author = {Shuji Suzuki},
  title = {Faster Protein Sequence Homology Searches for Large-scale Metagenomic Data},
  school = {東京工業大学},
  year = 2015,
}

@phdthesis{CTT100698390,
  author = {Shuji Suzuki},
  title = {Faster Protein Sequence Homology Searches for Large-scale Metagenomic Data},
  school = {東京工業大学},
  year = 2015,
}