@article{CTT100575032,
  author = {Tsukamoto K and Yoshikawa T and Hourai Y and Fukui K and Akiyama Y.},
  title = {Development of an affinity evaluation and prediction system by using the shape complementarity characteristic between proteins},
  journal = {Journal of bioinformatics and computational biology},
  year = 2008,
}

@article{CTT100571673,
  author = {Daisuke Tominaga and Yutaka Akiyama},
  title = {High-throughput automated image processing system for cell array observations},
  journal = {Information and Media Technologies},
  year = 2008,
}

@inproceedings{CTT100576744,
  author = {Yutaka Akiyama and Toshiyuki Sato and Yusuke Matsuzaki and Yuri Matsuzaki},
  title = {MEGADOCK - A massively parallel software system for all-to-all protein docking analysis with pre-calculated Fourier library of protein structures},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571799,
  author = {Yutaka Akiyama and Toshiyuki Sato and Yusuke Matsuzaki and Yuri Matsuzaki},
  title = {Megadock - a rapid screening system for all-to-all protein docking analysis with precalculated fourier library of protein structures},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571802,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {Virtual screening of protein-protein interactions: an application to known signal transduction systems},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571806,
  author = {Kouta Toshimoto and Kazuya Maeda and Yuichi Sugiyama and Yutaka Akiyama},
  title = {Drug clearance pathways prediction system based on machine learning techniques},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100575985,
  author = {Yutaka Akiyama and Takahiro Ide and Fumikazu Konishi},
  title = {A GPGPU-based ultra fast computer system for mapping short DNA fragments onto human/mouse full genome sequence},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100576738,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {In silico screening method of protein-protein interactions using all-to-all rigid docking and clustering: with application to pathway analysis},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571690,
  author = {Yutaka Akiyama},
  title = {Predicting protein-protein interactions with a peta-flops computer: Techniques and potential applications to systems biology research},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571729,
  author = {Kouta Toshimoto and Makiko Kusama and Kazuya Maeda and Yuichi Sugiyama and Yutaka Akiyama},
  title = {In silico prediction of major drug clearance pathways by machine learning techniques},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571727,
  author = {Makiko Kusama and Kouta Toshimoto and Kazuya Maeda and Yuka Hirai and Satoki Imai and Koji Chiba and Yutaka Akiyama and Yuichi Sugiyama},
  title = {Classification of major clearance pathways of drugs based on physicochemical parameters},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571814,
  author = {Kouta Toshimoto and Makiko Kusama and Kazuya Maeda and Yuichi Sugiyama and Yutaka Akiyama},
  title = {In silico prediction of major drug clearance pathways by machine learning techniques},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571813,
  author = {Satoshi Matsuoka and Yutaka Akiyama and Akira Nukada and Toshio Endo and Yasuhiko Ogata and Fumikazu Konishi},
  title = {HPC-GPGPU: Large-scale commodity accelerated clusters and its application to advanced structural proteomics},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571812,
  author = {Yutaka Akiyama and Takahiro Ide and Fumikazu Konishi},
  title = {A GPGPU-based ultra fast sequence comparison system for mapping short DNA fragments onto human/mouse full genome sequence},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571810,
  author = {Kazuya Maeda and Makiko Kusama and Kouta Toshimoto and Yuka Hirai and Satoki Imai and Koji Chiba and Yutaka Akiyama and Yuichi Sugiyama},
  title = {Classification of major clearance pathways of drugs based on their physicochemical parameters},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571811,
  author = {Kouta Toshimoto and Makiko Kusama and Kazuya Maeda and Yuichi Sugiyama and Yutaka Akiyama},
  title = {In silico prediction of major drug clearance pathways by machine learning techniques},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571732,
  author = {Makiko Kusama and Kouta Toshimoto and Kazuya Maeda and Yuka Hirai and Satoki Imai and Koji Chiba and Yutaka Akiyama and Yuichi Sugiyama},
  title = {Classification of major clearance pathways of drugs based on physicochemical parameters},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571816,
  author = {Yutaka Akiyama and Takahiro Ide and Fumikazu Konishi},
  title = {A GPGPU-based ultra fast computer system for mapping short DNA fragments onto human/mouse full genome sequence},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571815,
  author = {Yutaka Akiyama and Toshiyuki Sato and Yusuke Matsuzaki and Yuri Matsuzaki},
  title = {Megadock - a rapid screening system for all-to-all protein docking analysis with pre-calculated fourier library of protein structures},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571819,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {Analysis of protein-protein interactions of signal transduction pathways using a docking prediction program},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571817,
  author = {Yusuke Matsuzaki and Yuri Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {Development of post-docking system for protein-protein interaction prediction},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100575984,
  author = {小西史一 and 竹本千重 and 赤坂領吾 and 行木信一 and 秋山泰 and 横山茂之 and 豊田哲郎 and 村山和隆},
  title = {結晶スクリーニング結果を活用した機械学習による結晶化条件の予測モデルアレイ},
  booktitle = {情報処理学会 研究報告},
  year = 2008,
}

@inproceedings{CTT100571756,
  author = {年本 広太 and 草間 真紀子 and 前田 和哉 and 杉山 雄一 and 秋山 泰},
  title = {機械学習を用いた薬物のクリアランス経路予測},
  booktitle = {情報処理学会 研究報告},
  year = 2008,
}

@inproceedings{CTT100571734,
  author = {草間 真紀子 and 平井 由香 and 前田 和哉 and 今井 覚己 and 千葉 康司 and 年本 広太 and 秋山 泰 and 杉山 雄一},
  title = {医薬品の物理化学的特性に基づいた薬物動態プロファイリング (I)},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571821,
  author = {秋山 泰},
  title = {パイロシーケンシング法における読み取りエラー発生シミュレータとその応用},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571745,
  author = {松崎 由理 and 松崎 裕介 and 佐藤 智之 and 秋山 泰},
  title = {タンパク質ドッキング予測プログラムによるシグナル伝達系のタンパク質間相互作用解析},
  booktitle = {情報処理学会 研究報告},
  year = 2008,
}

@inproceedings{CTT100571742,
  author = {松崎 裕介 and 松崎 由理 and 佐藤 智之 and 秋山 泰},
  title = {タンパク質間相互作用予測のためのドッキング後処理システムの開発},
  booktitle = {情報処理学会 研究報告},
  year = 2008,
}

@inproceedings{CTT100571738,
  author = {年本 広太 and 草間 真紀子 and 前田 和哉 and 杉山 雄一 and 秋山 泰},
  title = {医薬品の物理化学的特性に基づいた薬物動態プロファイリング (II)},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571699,
  author = {秋山泰},
  title = {バイオインフォマティクスと大規模並列処理},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571822,
  author = {Satoshi Matsuoka and Yutaka Akiyama},
  title = {HPC-GPGPU: Large-scale commodity accelerated clusters and its application to advanced structural proteomics},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571758,
  author = {秋山 泰 and 松崎 裕介 and 佐藤 智之 and 藤原 康広 and 松崎 由理 and 小西 史一},
  title = {形状相補性に基づくタンパク質間相互作用予測ソフトウェアと大規模並列計算機上での網羅的な予測環境の開発},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571692,
  author = {Yutaka Akiyama},
  title = {Large scale computing for bioinformatics},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571760,
  author = {松崎 由理 and 松崎 裕介 and 佐藤 智之 and 秋山 泰},
  title = {細菌の走化性系への適用によるタンパク質間相互作用予測プログラムの評価},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571759,
  author = {Priyantha Wijayatunga and Yutaka Akiyama},
  title = {On protein-protein interaction prediction with yeast two-hybrid experiment data and protein domain associations},
  booktitle = {},
  year = 2008,
}

@inproceedings{CTT100571823,
  author = {秋山 泰},
  title = {パイロシーケンシング法における読み取りエラー発生シミュレータとその応用},
  booktitle = {},
  year = 2008,
}