@article{CTT100596607,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis},
  journal = {Journal of Bioinformatics and Computational Biology},
  year = 2009,
}

@inproceedings{CTT100593788,
  author = {Masahito Ohue and Yusuke Matsuzaki and Yuri Matsuzaki and Yutaka Akiyama},
  title = {Improvement of all-to-all protein-protein interaction prediction system MEGADOCK},
  booktitle = {The 20th International Conference on Genome Informatics Workshop Poster Proceedings},
  year = 2009,
}

@inproceedings{CTT100593493,
  author = {Shuji Suzuki and Yutaka Akiyama},
  title = {Ultra fast short sequence alignment on GPU},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593494,
  author = {Shun Hotta and Kouta Toshimoto and Kazushi Ikeda and Makiko Kusama and Kazuya Maeda and Yuichi Sugiyama and Yutaka Akiyama},
  title = {A web-based system for clearance pathway prediction},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593490,
  author = {Kazushi Ikeda and Kouta Toshimoto and Makiko Kusama and Kazuya Maeda and Yuichi Sugiyama and Yutaka Akiyama},
  title = {Prediction of Drug Clearance Pathway by Boosting Algorithm},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593491,
  author = {Yusei Owatari and Masakazu Sekijima and Yutaka Akiyama},
  title = {Binding analysis of neuraminidase inhibitors by fragment MO calculation},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100592858,
  author = {Kouta Toshimoto and Makiko Kusama and Kazuya Maeda and Yuichi Sugiyama and Yutaka Akiyama},
  title = {In Silico Prediction System of Major Drug Clearance Pathways by Feature Selection and Support Vector Machines},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593478,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Masahito Ohue and Toshiyuki Sato and Yutaka Akiyama},
  title = {A computational screening system of protein-protein interactions using tertiary structure data: an application to signaling pathway analysis.},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593479,
  author = {Wisnu Ananta Kusuma and Yutaka Akiyama},
  title = {Preliminary Study on de novo Sequence Assembly for Very Short Reads},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593481,
  author = {Yusuke Matsuzaki and Yuri Matsuzaki and Masakazu Sekijima and Yutaka Akiyama},
  title = {Protein structure sampling based on molecular dynamics and improvement of docking prediction},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593486,
  author = {Masahito Ohue and Yusuke Matsuzaki and Yuri Matsuzaki and Yutaka Akiyama},
  title = {Improvement of all-to-all protein-protein interaction prediction system MEGADOCK},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593489,
  author = {Youhei Namiki and Yutaka Akiyama},
  title = {Correcting read errors on DNA sequences determined by Pyrosequencing},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100589560,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Masahito Ohue and Toshiyuki Sato and Yutaka Akiyama},
  title = {In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100589920,
  author = {大上雅史 and 松崎裕介 and 松崎由理 and 秋山泰},
  title = {網羅的タンパク質間相互作用予測システムにおける判別精度の改良},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2009,
}

@inproceedings{CTT100590384,
  author = {松崎裕介 and 松崎由理 and 関嶋政和 and 秋山泰},
  title = {分子動力学法に基づくタンパク質構造サンプリングとドッキング予測の改良},
  booktitle = {情報処理学会研究報告},
  year = 2009,
}

@inproceedings{CTT100590410,
  author = {尾渡裕成 and 関嶋政和 and 秋山泰},
  title = {フラグメントMO法によるノイラミニダーゼ阻害薬の結合性解析},
  booktitle = {情報処理学会研究報告},
  year = 2009,
}

@inproceedings{CTT100590837,
  author = {秋山泰},
  title = {バイオインフォマティクスは複雑系を説明する},
  booktitle = {第61回日本生物工業学会大会講演要旨集},
  year = 2009,
}

@inproceedings{CTT100586434,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Masahito Ohue and Toshiyuki Sato and Yutaka Akiyama},
  title = {A computational screening system of protein-protein interactions using tertiary structure data: with application to pathway analysis},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100723080,
  author = {秋山 泰},
  title = {HPCに支えられてきたバイオインフォマティクス研究},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100576892,
  author = {大上雅史 and 松崎裕介 and 松崎由理 and 佐藤智之 and 秋山泰},
  title = {物理化学的相互作用の導入による網羅的タンパク質間相互作用予測システムの高精度化},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2009,
}

@inproceedings{CTT100581866,
  author = {池田和史 and 年本広太 and 草間真紀子 and 前田和哉 and 杉山雄一 and 秋山泰},
  title = {ブースティングによる薬物クリアランス経路予測},
  booktitle = {情報処理学会バイオ情報学研究会研究報告},
  year = 2009,
}

@inproceedings{CTT100581870,
  author = {並木洋平 and 秋山泰},
  title = {パイロシーケンシング法で決定されたDNA配列の読み取り誤差の訂正},
  booktitle = {情報処理学会バイオ情報学研究会研究報告},
  year = 2009,
}

@inproceedings{CTT100572628,
  author = {秋山泰},
  title = {バイオインフォマティクスの最新動向 －生物情報解析と音響学の隠れたハーモニー－},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100572627,
  author = {秋山泰},
  title = {GPUによる超高速処理～配列マッピングとタンパク質ドッキングへの応用～},
  booktitle = {},
  year = 2009,
}

@inproceedings{CTT100572568,
  author = {松崎 由理 and 松崎 裕介 and 大上雅史 and 佐藤 智之 and 秋山 泰},
  title = {ドッキング後処理によるPPI検出システムの応用と評価～EGFRシグナル伝達系への適用にむけて},
  booktitle = {},
  year = 2009,
}