@article{CTT100622415,
  author = {Kusama M and Toshimoto K and Maeda K and Hirai Y and Imai S and Chiba K and Akiyama Y and Sugiyama Y},
  title = {In silico classification of major clearance pathways of drugs with their physiochemical parameters.},
  journal = {Drug Metabolism and Disposition},
  year = 2010,
}

@inproceedings{CTT100619309,
  author = {Takashi Ishida and Yutaka Akiyama},
  title = {GPU-Acceleration of Protein Tertiary Structure Prediction based on a Fragment Assembly Simulation},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100622421,
  author = {鈴木 脩司 and 石田 貴士 and 秋山 泰},
  title = {FM-indexを用いた高速な配列相同性検索ツールの開発},
  booktitle = {情報処理学会研究報告バイオ情報学(BIO)},
  year = 2010,
}

@inproceedings{CTT100624988,
  author = {Nobuyuki Uchikoga and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Post-Doking Analysis with Interaction FingerPrint},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100622420,
  author = {並木洋平 and 秋山泰},
  title = {最長共通部分列に基づくDNA配列の高速クラスタリング},
  booktitle = {情報処理学会研究報告バイオ情報学(BIO)},
  year = 2010,
}

@inproceedings{CTT100633803,
  author = {Yutaka Akiyama},
  title = {Exhaustive Protein-Protein Interaction Network Prediction by MEGADOCK},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100619145,
  author = {Matsuzaki Yuri. and Uchikoga Nobuyuki. and Ohue Masahito. and Ishida Takashi. and Akiyama Yutaka},
  title = {Exhaustive protein-protein interaction prediction with MEGADOCK and its application to signaling pathway estimation},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100631872,
  author = {Masahito Ohue and Yuri Matsuzaki and Yutaka Akiyama},
  title = {Development of a Protein-RNA Interaction Prediction Method Based on a Docking Calculation},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100633802,
  author = {秋山泰},
  title = {MEGADOCK: Ultra Fast Structure Based Protein-Protein Interaction Prediction System},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100624987,
  author = {Kazushi Ikeda and Kazuya Maeda and Atsushi Ose and Yuichi Sugiyama and Yutaka Akiyama},
  title = {In silico prediction of substrates of drug transporters based on support vector machine and feature selection},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100876222,
  author = {大上雅史 and 松崎由理 and 松崎裕介 and 佐藤智之 and 秋山泰},
  title = {MEGADOCK：立体構造情報からの網羅的タンパク質間相互作用予測とそのシステム生物学への応用},
  booktitle = {情報処理学会論文誌数理モデル化と応用（TOM）},
  year = 2010,
}

@inproceedings{CTT100624984,
  author = {Naomi Wakayama and Kouta Toshimoto and Shun Hotta and Kazuya Maeda and Makiko Kusama and Satashi Imai and Yutaka Akiyama},
  title = {Evaluation of in silico prediction method of drug clearance pathways from simple physicochemical parameters},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100633801,
  author = {秋山泰},
  title = {Large-scale Bioinformatics Applications on Multi-node GPU},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100619146,
  author = {Matsuzaki Yuri. and Ohue Masahito. and Matsuzaki Yusuke. and Sato Toshuyuki and Akiyama Yutaka},
  title = {A computational screening system of protein-protein interactions: connecting protein structural information to biological pathway estimation},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100624985,
  author = {Shun Hotta and Kouta Toshimoto and Kazushi Ikeda and Makiko Kusama and Kazuya Maeda and Yuichi Sugiyama and Yutaka Akiyama},
  title = {Construction of a web-based system for the prediction of major clearance pathway of drugs from their physicochemical properties},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100876469,
  author = {Masahito Ohue and Yuri Matsuzaki and Yusuke Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {n silico prediction of PPI network with structure-based all-to-all docking},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100622418,
  author = {Wisnu Ananta Kusuma and Yutaka Akiyama},
  title = {Design and simulation of hybrid de novo DNA sequence assembly for large eukaryotic genome},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100622652,
  author = {鈴木脩司 and 石田貴士 and 秋山泰},
  title = {GPUによるDNA断片配列の高速マッピング},
  booktitle = {情報処理学会研究報告バイオ情報学(BIO)},
  year = 2010,
}

@inproceedings{CTT100619312,
  author = {石田貴士 and 秋山泰},
  title = {単純ベイズ確率モデルの導入による天然変性蛋白質領域予測の改良},
  booktitle = {情報処理学会研究報告バイオ情報学(BIO)},
  year = 2010,
}

@inproceedings{CTT100622654,
  author = {堀田駿 and 年本広太 and 池田和史 and 草間真紀子 and 前田和哉 and 杉山雄一 and 秋山泰},
  title = {ウェブアプリケーションによるクリアランス経路予測},
  booktitle = {情報処理学会研究報告},
  year = 2010,
}

@inproceedings{CTT100622653,
  author = {鈴木脩司 and 石田貴士 and 秋山泰},
  title = {GPUによるDNA断片配列の高速マッピング},
  booktitle = {先進的計算基盤システムシンポジウムSACSIS2010論文集},
  year = 2010,
}

@inproceedings{CTT100605237,
  author = {大上雅史 and 松崎由理 and 松崎裕介 and 佐藤智之 and 秋山泰},
  title = {MEGADOCK：立体構造情報からの網羅的タンパク質間相互作用予測とそのシステム生物学への応用},
  booktitle = {研究報告数理モデル化と問題解決（MPS）},
  year = 2010,
}

@inproceedings{CTT100604323,
  author = {秋山 泰},
  title = {MEGADOCKの新機能と開発状況},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100624983,
  author = {年本 広太 and 草間 真紀子 and 池田 和史 and 堀田 駿 and 前田 和哉 and 杉山 雄一 and 秋山 泰},
  title = {SVMを用いた薬物クリアランス経路予測システムの開発―複数経路予測への拡張と外部データによる評価―},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100600835,
  author = {大上雅史 and 松崎裕介 and 松崎由理 and 佐藤智之 and 秋山 泰},
  title = {エネルギー計算に基づくリランキングとクラスタリングを用いた網羅的タンパク質間相互作用予測手法の提案},
  booktitle = {第2回データ工学と情報マネジメントに関するフォーラム(DEIM2010)},
  year = 2010,
}

@inproceedings{CTT100619307,
  author = {Takashi Ishida and Yutaka Akiyama},
  title = {GPU-Acceleration of de novo Protein Tertiary Structure Prediction},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100604306,
  author = {Masahito Ohue and Yusuke Matsuzaki and Yuri Matsuzaki and Toshiyuki Sato and Yutaka Akiyama},
  title = {MEGADOCK: An all-to-all protein-protein interaction prediction system -- Improving the accuracy using boosting and binding energy reranking.},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100604304,
  author = {Yuri Matsuzaki and Yusuke Matsuzaki and Masahito Ohue and Toshiyuki Sato and Yutaka Akiyama},
  title = {A computational screening system of protein-protein interactions: connecting structural information to pathway estimation.},
  booktitle = {},
  year = 2010,
}

@inproceedings{CTT100604322,
  author = {松崎裕介 and 大上雅史 and 松崎由理 and 佐藤智之 and 関嶋政和 and 秋山泰},
  title = {タンパク質の特性に基づくunboundドッキングのための剛体予測手法の改良},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2010,
}

@inproceedings{CTT100600836,
  author = {大上雅史 and 松崎裕介 and 松崎由理 and 佐藤智之 and 秋山泰},
  title = {リランキングを用いたタンパク質ドッキングの精度向上と網羅的タンパク質間相互作用予測への応用},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2010,
}

@inproceedings{CTT100805611,
  author = {若山 直美 and 年本 広太 and 堀田 駿 and 前田 和哉 and 草間 真紀子 and 今井 覚 and 秋山泰 and 杉山 雄一},
  title = {薬物排泄経路予測法の評価},
  booktitle = {日本薬物動態学会年会講演要旨集},
  year = 2010,
}

@inproceedings{CTT100805951,
  author = {池田 和史 and 前田 和哉 and 尾瀬 淳 and 杉山 雄一 and 秋山泰},
  title = {計算機によるサポートベクターマシンと特徴選択を用いた薬物トランスポーター基質予測},
  booktitle = {日本薬物動態学会年会講演要旨集},
  year = 2010,
}

@misc{CTT100619147,
  author = {Yutaka Akiyama and Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue},
  title = {Exhaustive protein-protein interaction network prediction by using MEGADOCK},
  year = 2010,
}

@misc{CTT100633789,
  author = {松崎由理 and 大上雅史 and 内古閑伸之 and 石田貴士 and 秋山 泰},
  title = {MEGADOCKによるタンパク質間相互作用予測～システム生物学への応用～},
  year = 2010,
}