@article{CTT100686070,
  author = {Masahiro Yano and Hiroshi Mori and Yutaka Akiyama and Takuji Yamada and Ken Kurokawa},
  title = {CLAST: CUDA implemented large-scale alignment search tool},
  journal = {BMC Bioinformatics 2014},
  year = 2014,
}

@article{CTT100684741,
  author = {Suzuki, S and Ishida, T and Akiyama, Y},
  title = {GHOSTX: An improved sequence homology search algorithm using a query suffix array and a database suffix array},
  journal = {PLoS ONE},
  year = 2014,
}

@article{CTT100684742,
  author = {Ohue, M. and Shimoda, T. and Suzuki, S. and Matsuzaki, Y. and Ishida, T. and Akiyama, Y.},
  title = {MEGADOCK 4.0: an ultra–high-performance protein–protein docking software for heterogeneous supercomputers},
  journal = {Bioinformatics},
  year = 2014,
}

@article{CTT100666828,
  author = {Masahito Ohue and Yuri Matsuzaki and Nobuyuki Uchikoga and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK: An all-to-all protein-protein interaction prediction system using tertiary structure data},
  journal = {Protein and Peptide Letters},
  year = 2014,
}

@article{CTT100669382,
  author = {You H and Kim GE and Na CH and Lee S and Lee CJ and Cho KH and Akiyama Y and Ishida T and No KT.},
  title = {An empirical model for gas phase acidity and basicity estimation},
  journal = {SAR and QSAR in Environmental Research},
  year = 2014,
}

@article{CTT100676726,
  author = {Toshimoto K and Wakayama N and Kusama M and Maeda K and Sugiyama Y and Akiyama Y},
  title = {In silico prediction of major drug clearance pathways by support vector machines with feature-selected descriptors},
  journal = {Drug Metabolism and Disposition},
  year = 2014,
}

@article{CTT100676869,
  author = {Satoshi Matsuoka and Hitoshi Sato and Osamu Tatebe and Michihiro Koibuchi and Ikki Fujiwara and Shuji Suzuki and Masanori Kakuta and Takashi Ishida and Yutaka Akiyama and Toyotaro Suzumura and Koji Ueno and Hiroki Kanezashi and Takemasa Miyoshi.},
  title = {Extreme Big Data (EBD): Next Generation Big Data Infrastructure Technologies Towards Yottabyte/Year},
  journal = {Supercomputing frontiers and innovations},
  year = 2014,
}

@inproceedings{CTT100715153,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra–high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715215,
  author = {年本 広太 and 若山 直美 and 堀田駿 and 前田 和哉 and 石田 貴士 and 秋山 泰 and 杉山 雄一},
  title = {機械学習を用いた 9 つの主要な in vivo 薬物クリアランス経路の in silico 予測},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715175,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {Bioinformatics},
  year = 2014,
}

@inproceedings{CTT100715154,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {The MEGADOCK Project: high-performance protein-protein interaction prediction tools on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715216,
  author = {Takashi Ishida and Kozue Hasumi and Yutaka Akiyama},
  title = {iNTRODB: database for NTDs drug target protein selection},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715174,
  author = {大上雅史 and 松崎由理 and 石田貴士 and 秋山泰},
  title = {タンパク質とペプチドのドッキング計算},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715177,
  author = {内古閑伸之 and 松崎由理 and 大上雅史 and 広川貴次 and 秋山泰},
  title = {Analysis of properties of protein-protein interaction surface areas involved in more near-native conmplexes by Re-docking scheme},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715176,
  author = {大上雅史 and 松崎由理 and 内古閑伸之 and 石田貴士 and 秋山泰},
  title = {MEGADOCK: a high-performance protein-protein interaction prediction tool on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715157,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {The MEGADOCK Project: high-performance protein-protein interaction prediction tools on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100677439,
  author = {Yuki Komatsu and Takashi Ishida and Yutaka Akiyama},
  title = {Metagenomic Phylogenetic Classification Using Improved Naïve Bayes},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100684744,
  author = {Ban, T. and Ishida, T. and Akiyama, Y.},
  title = {Improvement of a conformational search on protein-ligand docking based on optimal arrangement of multiple small search grids},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100805952,
  author = {柳澤 渓甫 and 石田 貴士 and 秋山泰},
  title = {半教師付き学習を用いた薬物クリアランス経路予測 (情報論的学習理論と機械学習)},
  booktitle = {電子情報通信学会技術研究報告 = IEICE technical report : 信学技報},
  year = 2014,
}

@inproceedings{CTT100715218,
  author = {蓮実 梢 and 石田 貴士 and 秋山 泰},
  title = {パスウェイ情報を用いた顧みられない熱帯病 創薬支援のための統合データベースiNTRODBの改良},
  booktitle = {情報処理学会研究報告},
  year = 2014,
}

@inproceedings{CTT100715219,
  author = {青山 健人 and 角田 将典 and 松崎 由理 and 石田 貴士 and 秋山 泰},
  title = {エクソーム解析パイプラインの京コンピュータ上での大規模並列化},
  booktitle = {情報処理学会研究報告},
  year = 2014,
}

@inproceedings{CTT100722740,
  author = {Yutaka Akiyama},
  title = {Development of an Ultra-Fast Computing Pipeline for Metagenome Analysis on Supercomputers},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100801894,
  author = {柳澤 渓甫 and 石田貴士 and 秋山泰},
  title = {半教師付き学習を用いた薬物クリアランス経路予測},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2014,
}

@inproceedings{CTT100801935,
  author = {大上 雅史 and 下田 雄大 and 松崎由理 and 石田貴士 and 秋山泰},
  title = {大規模GPUクラスタによるタンパク質ドッキング計算システム (ニューロコンピューティング)},
  booktitle = {電子情報通信学会技術研究報告 = IEICE technical report : 信学技報},
  year = 2014,
}

@inproceedings{CTT100801959,
  author = {大上雅史 and 下田 雄大 and 松崎由理 and 石田貴士 and 秋山泰},
  title = {大規模GPUクラスタによるタンパク質ドッキング計算システム},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2014,
}

@inproceedings{CTT100802163,
  author = {柳澤 渓甫 and 石田貴士 and 秋山泰},
  title = {半教師付き学習を用いた薬物クリアランス経路予測 (ニューロコンピューティング)},
  booktitle = {電子情報通信学会技術研究報告 = IEICE technical report : 信学技報},
  year = 2014,
}

@inproceedings{CTT100805061,
  author = {柳澤 渓甫 and 石田 貴士 and 秋山泰},
  title = {半教師付き学習を用いた薬物クリアランス経路予測},
  booktitle = {研究報告数理モデル化と問題解決（MPS）},
  year = 2014,
}

@inproceedings{CTT100805086,
  author = {大上 雅史 and 下田 雄大 and 松崎由理 and 石田 貴士 and 秋山泰},
  title = {大規模GPUクラスタによるタンパク質ドッキング計算システム},
  booktitle = {研究報告数理モデル化と問題解決（MPS）},
  year = 2014,
}

@inproceedings{CTT100805483,
  author = {大上 雅史 and 下田 雄大 and 松崎由理 and 石田 貴士 and 秋山泰},
  title = {大規模GPUクラスタによるタンパク質ドッキング計算システム (情報論的学習理論と機械学習)},
  booktitle = {電子情報通信学会技術研究報告 = IEICE technical report : 信学技報},
  year = 2014,
}

@inproceedings{CTT100669644,
  author = {Shuji Suzuki and Takashi Ishida and Yutaka Akiyama},
  title = {Accelerating identification of frequent k-mers in DNA sequences with GPU},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100722747,
  author = {秋山 泰},
  title = {大規模メタゲノム解析向け超並列相同性検索パイプラインの構築},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100669688,
  author = {伴兼弘 and 石田貴士 and 秋山泰},
  title = {蛋白質-化合物ドッキングにおけるグリッドの分散配置による配座探索の改良},
  booktitle = {情報処理学会研究報告},
  year = 2014,
}

@inproceedings{CTT100666898,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Re-docking scheme to explore docking search space by using interaction profiles},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100666854,
  author = {大上雅史 and 下田雄大 and 松崎由理 and 内古閑伸之 and 鈴木脩司 and 石田貴士 and 秋山泰},
  title = {MEGADOCK 4.0: mega-dock per dayへの道のり},
  booktitle = {生命情報科学若手の会 第5回研究会},
  year = 2014,
}

@inproceedings{CTT100722743,
  author = {Yutaka Akiyama},
  title = {Development of an Ultra-Fast Computing Pipeline for Metagenome Analysis on TSUBAME2.5 and K-computer},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100722748,
  author = {Yutaka Akiyama},
  title = {Development of an Ultra-Fast Computing Pipeline for Metagenome Analysis on Supercomputers},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100666899,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Takashi Ishida and Yutaka Akiyama},
  title = {Prediction of protein-protein interactions based on tertiary structures and transcription information},
  booktitle = {},
  year = 2014,
}