@book{CTT100720648,
  author = {秋山泰},
  title = {バイオインフォマティクス入門},
  publisher = {慶應義塾大学出版会},
  year = 2015,
}

@article{CTT100709036,
  author = {Shuntaro Chiba and Kazuyoshi Ikeda and Takashi Ishida and M. Michael Gromiha and Y-h. Taguchi and Mitsuo Iwadate and Hideaki Umeyama and Kun-Yi Hsin and Hiroaki Kitano and Kazuki Yamamoto and Nobuyoshi Sugaya and Koya Kato and Tatsuya Okuno and George Chikenji and Masahiro Mochizuki and Nobuaki Yasuo and Ryunosuke Yoshino and Keisuke Yanagisawa and Tomohiro Ban and Reiji Teramoto and Chandrasekaran Ramakrishnan and A. Mary Thangakani and D. Velmurugan and Philip Prathipati and Junichi Ito and Yuko Tsuchiya and Kenji Mizuguchi and Teruki Honma and Takatsugu Hirokawa and Yutaka Akiyama and Masakazu Sekijima},
  title = {Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target},
  journal = {Scientific Reports},
  year = 2015,
}

@article{CTT100695528,
  author = {Keisuke Yanagisawa and Takashi Ishida and Yutaka Akiyama},
  title = {Drug Clearance Pathway Prediction Based on Semi-supervised Learning},
  journal = {IPSJ Transactions on Bioinformatics},
  year = 2015,
}

@article{CTT100684743,
  author = {Suzuki S and Kakuta M and Ishida T and Akiyama Y.},
  title = {Faster sequence homology searches by clustering subsequences},
  journal = {Bioinformatics},
  year = 2015,
}

@article{CTT100677438,
  author = {Takehiro Shimoda and Shuji Suzuki and Masahito Ohue and Takashi Ishida and Yutaka Akiyama.},
  title = {Protein-Protein Docking on Hardware Accelerators : Comparison of GPU and MIC Architectures},
  journal = {BMC Systems Biology},
  year = 2015,
}

@inproceedings{CTT100715163,
  author = {大上雅史 and 松崎由理 and 石田貴士 and 秋山泰},
  title = {タンパク質間相互作用予測システムMEGADOCKによるEGFRパスウェイ解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715165,
  author = {鈴木翔吾 and 大上雅史 and 秋山泰},
  title = {活性値情報のグループ化を用いたランク学習による化合物スクリーニング},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715166,
  author = {柳澤 渓甫 and 小峰 駿汰 and 大上 雅史 and 石田 貴士 and 秋山 泰},
  title = {Fast pre-filtering for virtual screening based on ligand decomposition},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715211,
  author = {年本広太 and 尾瀬淳 and 池田和史 and 前田和哉 and 石田貴士 and 秋山泰 and 杉山 雄一},
  title = {機械学習を用いた薬物トランスポーター基質のin silico予測},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715119,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Takashi Ishida and Yutaka Akiyama},
  title = {A comparative study of GPU and MIC accelerations in fast Fourier transform-based protein-protein docking},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715121,
  author = {Tomohiro Ban and Masahito Ohue and Yutaka Akiyama},
  title = {Improving protein-ligand docking and inverse docking prediction by deepening conformation search on multiple grids},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715125,
  author = {Keisuke Yanagisawa and Shunta Komine and Masahito Ohue and Takashi Ishida and Yutaka Akiyama},
  title = {Fast pre-filtering for virtual screening based on compound fragmentation},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715131,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Analysis of protein docking decoys in terms of physicochemical properties of protein surfaces using rigid-body docking process},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715133,
  author = {Yuri Matsuzaki and Masahito Ohue and Nobuyuki Uchikoga and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK: A high-performance protein-protein interaction prediction software for petascale supercomputing environments},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715167,
  author = {鈴木翔吾 and 大上雅史 and 秋山泰},
  title = {活性値情報のグループ化とランク学習による活性化合物予測},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715164,
  author = {伴 兼弘 and 大上 雅史 and 秋山 泰},
  title = {Multiple Grids Arrangement for Improving Conformational Search of Protein-Ligand Docking and Its Application to Inverse Docking Problem},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100806093,
  author = {Uchikoga, Nobuyuki and Masahito Ohue and Yuri Matsuzaki and Yutaka Akiyama},
  title = {Post-docking analysis by physicochemical properties of protein-protein interactions generated from rigid-body docking processes},
  booktitle = {PROTEIN SCIENCE},
  year = 2015,
}

@inproceedings{CTT100722735,
  author = {秋山 泰},
  title = {次世代シークエンサデータ解析のための情報処理システムの開発},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715186,
  author = {Keisuke Yanagisawa and Shunta Komine and Masahito Ohue and Takashi Ishida and Yutaka Akiyama},
  title = {Fast pre-filtering for virtual screening based on compound decomposition},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715185,
  author = {Tomohiro Ban and Masahito Ohue and Yutaka Akiyama},
  title = {Multiple Grids Arrangement for Ligand Docking and Its Application to Inverse Docking Problem},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715170,
  author = {内古閑伸之 and 松崎由理 and 大上雅史 and 秋山泰},
  title = {剛体アンサンブルドッキングによって得られた候補構造群における相互作用残基ペアの特徴の解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715168,
  author = {大上雅史 and 内古閑伸之 and 松崎由理 and 秋山泰},
  title = {アミノ酸プロファイルによるタンパク質ペプチド複合体のポストドッキング解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715212,
  author = {年本広太 and 尾瀬淳 and 池田和史 and 前田和哉 and 石田貴士 and 秋山泰 and 杉山雄一},
  title = {機械学習を用いた薬物トランスポーター基質のin silico予測},
  booktitle = {トランスポーター研究会年会抄録集},
  year = 2015,
}

@inproceedings{CTT100703206,
  author = {和久井直樹 and 大上雅史 and 千葉峻太朗 and 石田貴士 and 岩﨑博史 and 秋山泰},
  title = {既知の活性／非活性化合物のドッキング解析によるバーチャルスクリーニングに適したタンパク質立体構造モデルの選択},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2015,
}

@inproceedings{CTT100703207,
  author = {鈴木翔吾 and 柳澤渓甫 and 大上雅史 and 石田貴士 and 秋山泰},
  title = {SVMとDeep Learningに基づくヒトc-Yesキナーゼ阻害化合物の予測},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2015,
}

@inproceedings{CTT100715173,
  author = {大上雅史 and 内古閑伸之 and 松崎由理 and 秋山泰},
  title = {タンパク質間相互作用残基の物理化学的性質による単純化プロファイルを用いたポストドッキング解析},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715213,
  author = {Yutaka Akiyama and Takashi Ishida},
  title = {iNTRODB and its Applicationin anti-Trypanosome Drug Discovery},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100801954,
  author = {相澤 洋輔 and 石田貴士 and 秋山泰},
  title = {ディープラーニングを利用したタンパク質天然変性領域予測},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2015,
}

@inproceedings{CTT100802239,
  author = {小幡 康文 and 石田貴士 and 秋山泰},
  title = {タンパク質ドッキングと配列情報特徴解析の融合によるタンパク質間相互作用予測の高精度化},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2015,
}

@inproceedings{CTT100684652,
  author = {Shuji Suzuki and Masanori Kakuta and Takashi Ishida and Yutaka Akiyama},
  title = {GHOSTZ-GPU: Fast Protein Sequence Homology Search on GPUs},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715140,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Yutaka Akiyama},
  title = {Prediction of human-virus protein-protein interactions by exhaustive rigid docking.},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715136,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Analysis of amino acid properties in interaction surfaces of decoys generated by re-docking},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100715151,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra–high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100684746,
  author = {Kakuta, M. and Suzuki, S. and Ishida, T. and Akiyama, Y.},
  title = {GHOST-MP: A Massively Parallel Biological Sequence Similarity Search for Metagenomics using OpenMP and MPI},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100703209,
  author = {小峰駿汰 and 石田貴士 and 秋山泰},
  title = {フラグメント伸長型タンパク質-化合物ドッキングのビームサーチによる高速化},
  booktitle = {情報処理学会研究報告},
  year = 2015,
}

@inproceedings{CTT100703208,
  author = {杉原舜 and 石田貴士 and 秋山泰},
  title = {低分子化合物二次元構造比較システムの改良},
  booktitle = {情報処理学会研究報告},
  year = 2015,
}

@inproceedings{CTT100677921,
  author = {Zhang Chaojie and Koichi Shirahata and Shuji Suzuki and Yutaka Akiyama and Satoshi Matsuoka},
  title = {Performance Analysis of MapReduce Implementations for High Performance Homology Search},
  booktitle = {},
  year = 2015,
}