@article{CTT100766243,
  author = {Masanori Kakuta and Shuji Suzuki and Kazuki Izawa and Takashi Ishida and Yutaka Akiyama},
  title = {A Massively Parallel Sequence Similarity Search for Metagenomic Sequencing Data},
  journal = {International Journal of Molecular Sciences},
  year = 2017,
}

@article{CTT100766244,
  author = {Shuntaro Chiba and Takashi Ishida and Kazuyoshi Ikeda and Masahiro Mochizuki and Reiji Teramoto and Y-h. Taguchi and Mitsuo Iwadate and Hideaki Umeyama and Chandrasekaran Ramakrishnan and A. Mary Thangakani and D. Velmurugan and M. Michael Gromiha and Tatsuya Okuno and Koya Kato and Shintaro Minami and George Chikenji and Shogo D. Suzuki and Keisuke Yanagisawa and Woong-Hee Shin and Daisuke Kihara and Kazuki Z. Yamamoto and Yoshitaka Moriwaki and Nobuaki Yasuo and Ryunosuke Yoshino and Sergey Zozulya and Petro Borysko and Roman Stavniichuk and Teruki Honma and Takatsugu Hirokawa and Yutaka Akiyama and Masakazu Sekijima},
  title = {An iterative compound screening contest method for identifying target protein inhibitors using the tyrosine-protein kinase Yes},
  journal = {Scientific Reports},
  year = 2017,
}

@article{CTT100766242,
  author = {Ryunosuke Yoshino and Nobuaki Yasuo and Yohsuke Hagiwara and Takashi Ishida and Daniel Ken Inaoka and Yasushi Amano and Yukihiro Tateishi and Kazuki Ohno and Ichiji Namatame and Tatsuya Niimi and Masaya Orita and Kiyoshi Kita and Yutaka Akiyama and Masakazu Sekijima},
  title = {In silico, in vitro, X-ray crystallography, and integrated strategies for discovering spermidine synthase inhibitors for Chagas disease},
  journal = {Scientific Reports},
  year = 2017,
}

@article{CTT100766869,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Yutaka Akiyama},
  title = {Rigid-Docking Approaches to Explore Protein–Protein Interaction Space},
  journal = {Advances in Biochemical Engineering/Biotechnology(Network Biology)},
  year = 2017,
}

@article{CTT100766245,
  author = {Shuji Suzuki and Takashi Ishida and Masahito Ohue and Masanori Kakuta and Yutaka Akiyama},
  title = {GHOSTX: A Fast Sequence Homology Search Tool for Functional Annotation of Metagenomic Data},
  journal = {Methods in Molecular Biology(Protein Function Prediction)},
  year = 2017,
}

@article{CTT100776729,
  author = {Yanagisawa K and Komine S and Shogo Suzuki and Ohue M and Ishida T and Akiyama Y.},
  title = {Spresso: an ultrafast compound pre-screening method based on compound decomposition},
  journal = {Bioinformatics},
  year = 2017,
}

@inproceedings{CTT100783055,
  author = {Masahito Ohue and Yuki Yamamoto and Kento Aoyama and Yutaka Akiyama},
  title = {MEGADOCK-Azure: high-performance protein-protein docking on Microsoft Azure HPC},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100776727,
  author = {Ban T and Ohue M and Akiyama Y},
  title = {Efficient Hyperparameter Optimization by Using Bayesian Optimization for Drug-Target Interaction Prediction},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100776726,
  author = {Ohue M and Yamazaki T and Ban T and Akiyama Y},
  title = {Link Mining for Kernel-based Compound-Protein Interaction Predictions Using a Chemogenomics Approach},
  booktitle = {Lecture Notes in Computer Science},
  year = 2017,
}

@inproceedings{CTT100766884,
  author = {林孝紀 and 山本悠生 and 松崎由理 and 大上雅史 and 秋山泰},
  title = {タンパク質間相互作用予測統合データベースMEGADOCK-WEBの改良とクラウド計算環境との連携},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2017,
}

@inproceedings{CTT100766878,
  author = {山澤 まりな and 伊澤 和輝 and 大上 雅史 and 石田 貴士 and Kazuyuki Ishihara and 秋山 泰},
  title = {高速相同性解析ツールGHOSTXを用いた口腔内メタゲノム解析},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2017,
}

@inproceedings{CTT100766883,
  author = {伊澤 和輝 and 山澤 まりな and 大上 雅史 and 石田 貴士 and 秋山 泰},
  title = {歯周病の発症要因の特定に向けた口腔内細菌叢解析},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2017,
}

@inproceedings{CTT100766885,
  author = {柳澤渓甫 and 小峰駿汰 and 久保田陸人 and 大上雅史 and 秋山泰},
  title = {フラグメント伸長型化合物ドッキング計算のための重み付きオフラインキャッシュ問題の厳密解アルゴリズム},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2017,
}

@inproceedings{CTT100766880,
  author = {大上 雅史 and 山本 悠生 and 秋山 泰},
  title = {Microsoft Azure上でのタンパク質間相互作用予測システムの並列計算と性能評価},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2017,
}

@inproceedings{CTT100766879,
  author = {柳澤渓甫 and 大上雅史 and 石田貴士 and 秋山泰},
  title = {標的タンパク質の立体構造を用いたリガンド候補化合物の上限サイズの推定による化合物フィルタリング},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2017,
}

@inproceedings{CTT100766882,
  author = {青山 健人 and 山本 悠生 and 大上 雅史 and 秋山 泰},
  title = {コンテナ型仮想化による分散計算環境におけるタンパク質間相互作用予測システムの性能評価},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2017,
}

@inproceedings{CTT100805974,
  author = {Uchikoga, Nobuyuki and Yuri Matsuzaki and Masahito Ohue and Yutaka Akiyama},
  title = {Interaction Surfaces of Proteins Involved in Bacterial Chemotaxis with Rigid-Body Docking Decoys},
  booktitle = {BIOPHYSICAL JOURNAL},
  year = 2017,
}

@inproceedings{CTT100806049,
  author = {Masahito Ohue and Yamamoto, Yuki and Hayashi, Takanori and Yuri Matsuzaki and Yutaka Akiyama},
  title = {Cloud Computing for All-To-All Protein-Protein Docking on Azure HPC},
  booktitle = {BIOPHYSICAL JOURNAL},
  year = 2017,
}

@inproceedings{CTT100806075,
  author = {Yuri Matsuzaki and Simm, Jaak and Uchikoga, Nobuyuki and Yutaka Akiyama},
  title = {A Docking Based Approach to Analyze Interaction Surfaces of Virus-Host Protein-Protein Interactions},
  booktitle = {BIOPHYSICAL JOURNAL},
  year = 2017,
}

@inproceedings{CTT100851563,
  author = {Shogo Suzuki and Masahito Ohue and Yutaka Akiyama},
  title = {Learning-to-rank based compound virtual screening by using pairwise kernel with multiple heterogeneous experimental data},
  booktitle = {},
  year = 2017,
}