@article{CTT100684742,
  author = {Ohue, M. and Shimoda, T. and Suzuki, S. and Matsuzaki, Y. and Ishida, T. and Akiyama, Y.},
  title = {MEGADOCK 4.0: an ultra–high-performance protein–protein docking software for heterogeneous supercomputers},
  journal = {Bioinformatics},
  year = 2014,
}

@article{CTT100666828,
  author = {Masahito Ohue and Yuri Matsuzaki and Nobuyuki Uchikoga and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK: An all-to-all protein-protein interaction prediction system using tertiary structure data},
  journal = {Protein and Peptide Letters},
  year = 2014,
}

@inproceedings{CTT100715153,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra–high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715154,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {The MEGADOCK Project: high-performance protein-protein interaction prediction tools on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715175,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers},
  booktitle = {Bioinformatics},
  year = 2014,
}

@inproceedings{CTT100715174,
  author = {大上雅史 and 松崎由理 and 石田貴士 and 秋山泰},
  title = {タンパク質とペプチドのドッキング計算},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715157,
  author = {Masahito Ohue and Takehiro Shimoda and Shuji Suzuki and Yuri Matsuzaki and Takashi Ishida and Yutaka Akiyama},
  title = {The MEGADOCK Project: high-performance protein-protein interaction prediction tools on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715177,
  author = {内古閑伸之 and 松崎由理 and 大上雅史 and 広川貴次 and 秋山泰},
  title = {Analysis of properties of protein-protein interaction surface areas involved in more near-native conmplexes by Re-docking scheme},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100715176,
  author = {大上雅史 and 松崎由理 and 内古閑伸之 and 石田貴士 and 秋山泰},
  title = {MEGADOCK: a high-performance protein-protein interaction prediction tool on supercomputing environments},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100805483,
  author = {大上 雅史 and 下田 雄大 and 松崎由理 and 石田 貴士 and 秋山泰},
  title = {大規模GPUクラスタによるタンパク質ドッキング計算システム (情報論的学習理論と機械学習)},
  booktitle = {電子情報通信学会技術研究報告 = IEICE technical report : 信学技報},
  year = 2014,
}

@inproceedings{CTT100801959,
  author = {大上雅史 and 下田 雄大 and 松崎由理 and 石田貴士 and 秋山泰},
  title = {大規模GPUクラスタによるタンパク質ドッキング計算システム},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2014,
}

@inproceedings{CTT100805086,
  author = {大上 雅史 and 下田 雄大 and 松崎由理 and 石田 貴士 and 秋山泰},
  title = {大規模GPUクラスタによるタンパク質ドッキング計算システム},
  booktitle = {研究報告数理モデル化と問題解決（MPS）},
  year = 2014,
}

@inproceedings{CTT100715219,
  author = {青山 健人 and 角田 将典 and 松崎 由理 and 石田 貴士 and 秋山 泰},
  title = {エクソーム解析パイプラインの京コンピュータ上での大規模並列化},
  booktitle = {情報処理学会研究報告},
  year = 2014,
}

@inproceedings{CTT100801935,
  author = {大上 雅史 and 下田 雄大 and 松崎由理 and 石田貴士 and 秋山泰},
  title = {大規模GPUクラスタによるタンパク質ドッキング計算システム (ニューロコンピューティング)},
  booktitle = {電子情報通信学会技術研究報告 = IEICE technical report : 信学技報},
  year = 2014,
}

@inproceedings{CTT100666899,
  author = {Yuri Matsuzaki and Nobuyuki Uchikoga and Masahito Ohue and Takashi Ishida and Yutaka Akiyama},
  title = {Prediction of protein-protein interactions based on tertiary structures and transcription information},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100666898,
  author = {Nobuyuki Uchikoga and Yuri Matsuzaki and Masahito Ohue and Takatsugu Hirokawa and Yutaka Akiyama},
  title = {Re-docking scheme to explore docking search space by using interaction profiles},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100666854,
  author = {大上雅史 and 下田雄大 and 松崎由理 and 内古閑伸之 and 鈴木脩司 and 石田貴士 and 秋山泰},
  title = {MEGADOCK 4.0: mega-dock per dayへの道のり},
  booktitle = {生命情報科学若手の会 第5回研究会},
  year = 2014,
}