@book{CTT100892703,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {Molecular dynamics},
  publisher = {},
  year = 2022,
}

@article{CTT100874613,
  author = {Satoshi Yamashita and Misao Mizuno and Kazuhiro Takemura and Akio Kitao and Yasuhisa Mizutani},
  title = {Dependence of Vibrational Energy Transfer on Distance in a Four-Helix Bundle Protein: Equidistant Increments with the Periodicity of α Helices},
  journal = {The Journal of Physical Chemistry B},
  year = 2022,
}

@article{CTT100874620,
  author = {Takeo Yamawaki and Misao Mizuno and Haruto Ishikawa and Kazuhiro Takemura and Akio Kitao and Yoshitsugu Shiro and Yasuhisa Mizutani},
  title = {Regulatory Switching by Concerted Motions on the Microsecond Time Scale of the Oxygen Sensor Protein FixL},
  journal = {The Journal of Physical Chemistry B},
  year = 2021,
}

@article{CTT100833541,
  author = {Aini Gusmira and Kazuhiro Takemura and Shin Yong Lee and Takehiko Inaba and Kyoko Hanawa-Suetsugu and Kayoko Oono-Yakura and Kazuma Yasuhara and Akio Kitao and Shiro Suetsugu},
  title = {Regulation of caveolae through cholesterol-depletion-dependent tubulation mediated by PACSIN2},
  journal = {Journal of Cell Science},
  year = 2020,
}

@article{CTT100810106,
  author = {Kei Terayama and Ai Shinobu and Koji Tsuda and Kazuhiro Takemura and Akio Kitao},
  title = {evERdock BAI: Machine-learning-guided selection of protein-protein complex structure},
  journal = {The Journal of Chemical Physics},
  year = 2019,
}

@article{CTT100809969,
  author = {Yuichi Yokochi and Kazunori Sugiura and Kazuhiro Takemura and Keisuke Yoshida and Satoshi Hara and Ken-ichi Wakabayashi and Akio Kitao and Toru Hisabori},
  title = {Impact of key residues within chloroplast thioredoxin-f on recognition for reduction and oxidation of target proteins},
  journal = {Journal of Biological Chemistry},
  year = 2019,
}

@article{CTT100810107,
  author = {Justin Chan and Hong-Rui Lin and Kazuhiro Takemura and Kai-Chun Chang and Yuan-Yu Chang and Yasumasa Joti and Akio Kitao and Lee-Wei Yang},
  title = {An Efficient Timer and Sizer of Biomacromolecular Motions},
  journal = {Structure},
  year = 2019,
}

@article{CTT100809961,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {More efficient screening of protein-protein complex model structures for reducing the number of candidates},
  journal = {Biophysics and Physicobiology},
  year = 2019,
}

@article{CTT100809959,
  author = {Kyoko Hanawa-Suetsugu and Yuzuru Itoh and Maisarah Ab Fatah and Tamako Nishimura and Kazuhiro Takemura and Kohei Takeshita and Satoru Kubota and Naoyuki Miyazaki and Wan Nurul Izzati Wan Mohamad Noor and Takehiko Inaba and Nhung Thi Hong Nguyen and Sayaka Hamada-Nakahara and Kayoko Oono-Yakura and Masashi Tachikawa and Kenji Iwasaki and Daisuke Kohda and Masaki Yamamoto and Akio Kitao and Atsushi Shimada and Shiro Suetsugu},
  title = {Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7},
  journal = {Nature Communications},
  year = 2019,
}

@article{CTT100784976,
  author = {Ai Shinobu and Kazuhiro Takemura and Nobuyuki Matubayasi and Akio Kitao},
  title = {Refining evERdock: Improved selection of good protein-protein complex models achieved by MD optimization and use of multiple conformations},
  journal = {The Journal of Chemical Physics},
  year = 2018,
}

@article{CTT100773142,
  author = {Kazuhiro Takemura and Chika Sato and Akio Kitao},
  title = {ColDock: Concentrated Ligand Docking with All-Atom Molecular Dynamics Simulation},
  journal = {The Journal of Physical Chemistry B},
  year = 2018,
}

@article{CTT100761030,
  author = {Kazuhiro Takemura and Nobuyuki Matubayasi and Akio Kitao},
  title = {Binding free energy analysis of protein-protein docking model structures by evERdock},
  journal = {The Journal of Chemical Physics},
  year = 2018,
}

@article{CTT100748710,
  author = {Kazuhiro Takemura and Kyoko Hanawa-Suetsugu and Shiro Suetsugu and Akio Kitao},
  title = {Salt Bridge Formation between the I-BAR Domain and Lipids Increases Lipid Density and Membrane Curvature},
  journal = {Scientific Reports},
  year = 2017,
}

@article{CTT100748612,
  author = {Akio Kitao and Kazuhiro Takemura},
  title = {High anisotropy and frustration: the keys to regulating protein function efficiently in crowded environments.},
  journal = {Current opinion in structural biology},
  year = 2017,
}

@article{CTT100748610,
  author = {Deguchi, A. and Tomita, T. and Ohto, U. and Kazuhiro Takemura and Akio Kitao and Miyake, K. and Akashi-Takamura, S. and Maru, Y.},
  title = {Eritoran inhibits S100A8-mediated TLR4/MD-2 activation and tumor growth by changing the immune microenvironment},
  journal = {Oncogene},
  year = 2016,
}

@inproceedings{CTT100874812,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874809,
  author = {Ryunosuke Kiuchi and Kazuhiro Takemura and Akio Kitao},
  title = {Application of ColDock to docking of cryptic pockets},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874817,
  author = {竹村 和浩 and 北尾 彰朗},
  title = {PPI-ColDock 法を用いた蛋白質‐ 蛋白質複合体形成},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851900,
  author = {宮澤佳希 and TranPhuoc Duy and 竹村和浩 and 北尾彰朗},
  title = {PaCS-MD/MSM を用いたタンパク質-タンパク質複合体の結合親和性評価},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851882,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851887,
  author = {宮澤佳希 and TranPhuoc Duy and 竹村和浩 and 北尾彰朗},
  title = {PaCS-MD/MSM を用いたタンパク質複合体の速度定数評価},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851880,
  author = {Yoshiki Miyazawa and Duy Phuoc Tran and Kazuhiro Takemura and Akio Kitao},
  title = {Protein-protein complex dissociation simulated by Parallel Cascade Selection Molecular Dynamics},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100851870,
  author = {Kazuhiro Takemura and Akio Kitao},
  title = {Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock},
  booktitle = {},
  year = 2020,
}