@article{CTT100874622,
  author = {Hiroaki Hata and Duy Phuoc Tran and Marzouk and Akio Kitao},
  title = {Binding free energy of protein/ligand complexes calculated using dissociation Parallel Cascade Selection Molecular Dynamics and Markov state model},
  journal = {Biophysics and Physicobiology},
  year = 2021,
}

@article{CTT100851847,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Using molecular dynamics simulations to prioritize and understand AI-generated cell penetrating peptides},
  journal = {Scientific Reports},
  year = 2021,
}

@inproceedings{CTT100874811,
  author = {Duy Tran and Akio Kitao},
  title = {DNA bending enhances the dissociation of tetrameric p53’s coredomains},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874820,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Binding free energy calculation with dPaCS-MD/MSM},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874807,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Atomic mechanism of the complete association of intrinsically disordered peptide to protein},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874819,
  author = {Duy Tran and Akio Kitao},
  title = {Predicting the complex conformations of protein/intrinsically disordered peptide complexes},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874813,
  author = {宮澤 佳希 and Tran Phuoc Duy and 竹村 和浩 and 北尾 彰朗},
  title = {Parallel Cascade Selection Molecular Dynamics/Markov State Model によるタンパク質－タンパク質複合体の結合親和性評価 (Evaluation of binding affinity for protein-protein complexes by Parallel Cascade Selection Molecular Dynamics/Markov State Model},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100874818,
  author = {チャン フ ズイ and 畑 宏明 and 中矢 光 and 北尾彰朗},
  title = {Benchmarking the free energy calculation of PaCS-MD/MSM},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100847106,
  author = {Mariko Kojima and Yuki Hishikawa and Satoshi Abe and Tadaomi Furuta and Duy Phuoc Tran and Akio Kitao and Takafumi Ueno},
  title = {Energy Analysis of Miniprotein by in Vivo Protein Crystallization},
  booktitle = {},
  year = 2021,
}

@misc{CTT100875329,
  author = {Duy Phuoc Tran and Akio Kitao},
  title = {Calculation of Binding Free Energy and Kinetic Rates with Flexible Protein Docking},
  year = 2021,
}