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Publication List - Yusuke Matsuzaki (27 entries)
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Journal Paper
Domestic Conference (Reviewed)
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Masahito Ohue,
Yuri Matsuzaki,
Yusuke Matsuzaki,
Toshiyuki Sato,
Yutaka Akiyama.
MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data and its application to systems biology study,
情報処理学会数理モデル化と問題解決研究会,
情報処理学会論文誌数理モデル化と応用(TOM),
情報処理学会,
Vol. 3,
No. 3,
pp. 91-106,
Oct. 2010.
Official location
International Conference (Not reviewed / Unknown)
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Matsuzaki Yuri.,
Ohue Masahito.,
Matsuzaki Yusuke.,
Sato Toshuyuki,
Akiyama Yutaka.
A computational screening system of protein-protein interactions: connecting protein structural information to biological pathway estimation,
11th International Conference on Systems Biology (ICSB),
Oct. 2010.
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Masahito Ohue,
Yuri Matsuzaki,
Yusuke Matsuzaki,
Toshiyuki Sato,
Yutaka Akiyama.
n silico prediction of PPI network with structure-based all-to-all docking,
InCoB2010 - the 9th International Conference on Bioinformatics,
Sept. 2010.
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Masahito Ohue,
Yusuke Matsuzaki,
Yuri Matsuzaki,
Toshiyuki Sato,
Yutaka Akiyama.
MEGADOCK: An all-to-all protein-protein interaction prediction system -- Improving the accuracy using boosting and binding energy reranking.,
The 2nd Biosupercomputing Symposium,
Mar. 2010.
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Yuri Matsuzaki,
Yusuke Matsuzaki,
Masahito Ohue,
Toshiyuki Sato,
Yutaka Akiyama.
A computational screening system of protein-protein interactions: connecting structural information to pathway estimation.,
The 2nd Biosupercomputing Symposium,
Mar. 2010.
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Masahito Ohue,
Yusuke Matsuzaki,
Yuri Matsuzaki,
Yutaka Akiyama.
Improvement of all-to-all protein-protein interaction prediction system MEGADOCK,
The 20th International Conference on Genome Informatics Workshop(GIW2009),
The 20th International Conference on Genome Informatics Workshop Poster Proceedings,
P033,
Dec. 2009.
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Yusuke Matsuzaki,
Yuri Matsuzaki,
Masakazu Sekijima,
Yutaka Akiyama.
Protein structure sampling based on molecular dynamics and improvement of docking prediction,
BIOINFO 2009 CBI-KSBSB Joint Conference,
Proc. BIOINFO 2009 CBI-KSBSB Joint Conference,
P10-99,
Nov. 2009.
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Yuri Matsuzaki,
Yusuke Matsuzaki,
Masahito Ohue,
Toshiyuki Sato,
Yutaka Akiyama.
A computational screening system of protein-protein interactions using tertiary structure data: an application to signaling pathway analysis.,
BIOINFO 2009 CBI-KSBSB Joint Conference,
Proc. BIOINFO 2009 CBI-KSBSB Joint Conference,
P11-114,
Nov. 2009.
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Masahito Ohue,
Yusuke Matsuzaki,
Yuri Matsuzaki,
Yutaka Akiyama.
Improvement of all-to-all protein-protein interaction prediction system MEGADOCK,
BIOINFO 2009 CBI-KSBSB Joint Conference,
Proc. BIOINFO 2009 CBI-KSBSB Joint Conference,
P10-101,
Nov. 2009.
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Yuri Matsuzaki,
Yusuke Matsuzaki,
Masahito Ohue,
Toshiyuki Sato,
Yutaka Akiyama.
In silico screening of protein-protein interactions with all-to-all rigid docking and clustering: an application to pathway analysis,
The 10th International Conference on Systems Biology (ICSB 2009),
Sept. 2009.
Official location
Domestic Conference (Not reviewed / Unknown)
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KAZUHIKO KAWASHIMA,
Tomohiro Sasaki,
Yusuke Matsuzaki.
ペーパーブリッジコンテストーおもしろ理科教室,
第65回土木学会全国大会,
CS1-003,
1-2,
Sept. 2010.
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Masahito Ohue,
Yuri Matsuzaki,
Yusuke Matsuzaki,
Toshiyuki Sato,
Yutaka Akiyama.
MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data and its application to systems biology study,
情報処理学会数理モデル化と問題解決研究会,
IPSJ Technical Report,
情報処理学会,
Vol. 2010-MPS-78,
No. 3,
pp. 1-9,
May 2010.
Official location
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Masahito Ohue,
Yusuke Matsuzaki,
Yuri Matsuzaki,
Toshiyuki Sato,
Yutaka Akiyama.
Proposal of an all-to-all protein-protein interaction prediction technique,
第2回データ工学と情報マネジメントに関するフォーラム(DEIM2010),
第2回データ工学と情報マネジメントに関するフォーラム(DEIM2010),
E4-4,
Mar. 2010.
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Yusuke Matsuzaki,
Masahito Ohue,
Yuri Matsuzaki,
Toshiyuki Sato,
Masakazu Sekijima,
Yutaka Akiyama.
Improvement of rigid-body prediction for unbound docking based on protein feature,
情報処理学会 第20回バイオ情報学研究会,
IPSJ SIG Technical Report,
情報処理学会,
Vol. 2010-BIO-20,
No. 4,
pp. 1-8,
Feb. 2010.
Official location
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Masahito Ohue,
Yusuke Matsuzaki,
Yuri Matsuzaki,
Toshiyuki Sato,
Yutaka Akiyama.
Improvement of accuracy of the protein-protein docking calculation by a re-ranking method and its application to all-to-all protein-protein interaction predictions,
情報処理学会 第20回バイオ情報学研究会,
IPSJ SIG Technical Report,
情報処理学会,
Vol. 2010-BIO-20,
No. 3,
pp. 1-8,
Feb. 2010.
Official location
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Yusuke Matsuzaki,
Yuri Matsuzaki,
Masakazu Sekijima,
Yutaka Akiyama.
Protein structure sampling based on molecular dynamics and improvement of docking prediction,
IPSJ SIG BIO,
IPSJ SIG Technical Report,
Information Processing Society of Japan,
Vol. 2009-BIO-18,,
No. 1,
pp. 1-6,
Sept. 2009.
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Masahito Ohue,
Yusuke Matsuzaki,
Yuri Matsuzaki,
Yutaka Akiyama.
Improvement of the classification performance in all-to-all protein-protein interaction prediction system,
IPSJ SIG BIO,
IPSJ SIG Technical Report,
Information Processing Society of Japan,
Vol. 2009-BIO-18,
No. 3,
pp. 1-8,
Sept. 2009.
Official location
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Yuri Matsuzaki,
Yusuke Matsuzaki,
Masahito Ohue,
Toshiyuki Sato,
Yutaka Akiyama.
A computational screening system of protein-protein interactions using tertiary structure data: with application to pathway analysis,
Joint Computational Science Workshop 2009,
July 2009.
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Masahito Ohue,
Yusuke Matsuzaki,
Yuri Matsuzaki,
Toshiyuki Sato,
Yutaka Akiyama.
Improvement of all-to-all protein-protein interaction prediction system by introduciong physicochemical interaction,
情報処理学会 第17回バイオ情報学研究会,
IPSJ SIG Technical Report,
Information Processing Society of Japan,
2009-BIO-17,
11,
1-8,
May 2009.
Official location
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Yuri Matsuzaki,
Yuusuke Matsuzaki,
Masahito Ohue,
Toshiyuki Sato,
Yutaka Akiyama.
ドッキング後処理によるPPI検出システムの応用と評価~EGFRシグナル伝達系への適用にむけて,
第8回データ解析融合ワークショップ(公開ワークショップ),
Mar. 2009.
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Yutaka Akiyama,
Toshiyuki Sato,
Yusuke Matsuzaki,
Yuri Matsuzaki.
MEGADOCK - A massively parallel software system for all-to-all protein docking analysis with pre-calculated Fourier library of protein structures,
Biosupercomputing symposium (BSCS2008),
Dec. 2008.
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Yuri Matsuzaki,
Yusuke Matsuzaki,
Toshiyuki Sato,
Yutaka Akiyama.
In silico screening method of protein-protein interactions using all-to-all rigid docking and clustering: with application to pathway analysis,
Biosupercomputing symposium (BSCS2008),
Dec. 2008.
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Yuri Matsuzaki,
Yuusuke Matsuzaki,
佐藤 智之,
Yutaka Akiyama.
タンパク質ドッキング予測プログラムによるシグナル伝達系のタンパク質間相互作用解析,
第13回バイオ情報学研究会,
情報処理学会 研究報告,
2008,
58,
21-24,
June 2008.
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Yuusuke Matsuzaki,
Yuri Matsuzaki,
佐藤 智之,
Yutaka Akiyama.
タンパク質間相互作用予測のためのドッキング後処理システムの開発,
第13回バイオ情報学研究会,
情報処理学会 研究報告,
2008,
58,
17-20,
June 2008.
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Yutaka Akiyama,
Yuusuke Matsuzaki,
佐藤 智之,
藤原 康広,
Yuri Matsuzaki,
Fumikazu Konishi.
形状相補性に基づくタンパク質間相互作用予測ソフトウェアと大規模並列計算機上での網羅的な予測環境の開発,
第5回データ解析融合ワークショップ(公開ワークショップ),
Mar. 2008.
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Yuri Matsuzaki,
Yuusuke Matsuzaki,
佐藤 智之,
Yutaka Akiyama.
細菌の走化性系への適用によるタンパク質間相互作用予測プログラムの評価,
第5回データ解析融合ワークショップ(公開ワークショップ),
Mar. 2008.
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