Journal Paper

• Takashi Tajimi, Naoki Wakui, Keisuke Yanagisawa, Yasushi Yoshikawa, Masahito Ohue, Yutaka Akiyama. Computational prediction of plasma protein binding of cyclic peptides from small molecule experimental data using sparse modeling techniques, BMC Bioinformatics, Springer Nature, Volume 19, Dec. 2018.  Official location  
• Daisuke Kami, Tomoya Kitani, Akihiro Nakamura, Naoki Wakui, Rena Mizutani, Masahito Ohue, Fuyuki Kametani, Nobuyoshi Akimitsu, Satoshi Gojo. The DEAD-box RNA-binding protein DDX6 regulates parental RNA decay for cellular reprogramming to pluripotency, PLOS ONE, Volume 13, Issue 10, Oct. 2018.  Official location  
• Wakui, N., Yoshino, R., Yasuo, N., Ohue, M., Sekijima, M.. Exploring the selectivity of inhibitor complexes with Bcl-2 and Bcl-XL: A molecular dynamics simulation approach, Journal of Molecular Graphics and Modelling, Vol. 79, pp. 166-174, Jan. 2018.  Official location  

Book

• 木曽良明, Yutaka Akiyama, Masahito Ohue, Yasushi Yoshikawa, Naoki Wakui. 中分子創薬に適した特性を有する環状ペプチドのインシリコ設計（第8章）, 木曽良明監修「ペプチド創薬の最前線」, シーエムシー出版, pp. 70-78, May 2019.  Official location  

International Conference (Reviewed)

• Takashi Tajimi, Naoki Wakui, Keisuke Yanagisawa, Yasushi Yoshikawa, Masahito Ohue, Yutaka Akiyama. Computational prediction of plasma protein binding of cyclic peptides from small molecule experimental data using sparse modeling techniques, the 29th International Conference on Genome Informatics (GIW 2018), BMC Bioinformatics, Springer Nature, Volume 19, Dec. 2018.  Official location  

International Conference (Not reviewed / Unknown)

• Naoki Wakui, Ryunosuke Yoshino, Nobuaki Yasuo, Masahito Ohue, Masakazu Sekijima. Exploring the selectivity of inhibitor complexes with Bcl-2 and Bcl-XL: a molecular dynamics simiulation approach, 4th IIT Madras-Tokyo Tech Joint Symposium on Frontiers in Bioinformatics: Large Scale Data Analysis, Resources and Drug Design, Nov. 2017.  Official location  

Domestic Conference (Not reviewed / Unknown)

• Yuta Yamada, Yasushi Yoshikawa, Naoki Wakui, Masahito Ohue, Yutaka Akiyama. Development of Membrane Permeability Prediction Method for Cyclic Peptids with Machine Learning, 第8回生命医薬情報学連合大会 (IIBMP2019), Sept. 2019.  Official location  
• Yicong Huang, Yasushi Yoshikawa, Naoki Wakui, Masahito Ohue, Yutaka Akiyama. Development of membrane permeability prediction method for cyclic peptides using enhanced sampling molecular dynamics simulation, 情報処理学会研究報告 バイオ情報学（BIO）, 研究報告バイオ情報学（BIO）, 情報処理学会, Vol. 2019-BIO-57, No. 10, pp. 1-8, Mar. 2019.  Official location  
• Yuta Yamada, Yasushi Yoshikawa, Naoki Wakui, Masahito Ohue, Yutaka Akiyama. Developement of membrane permeability prediction method for cyclic peptides with machine learning, 情報処理学会研究報告 バイオ情報学（BIO）, 研究報告バイオ情報学（BIO）, 情報処理学会, Vol. 2019-BIO-57, No. 13, pp. 1-8, Mar. 2019.  Official location  
• Takashi Tajimi, Naoki Wakui, Masahito Ohue, Yutaka Akiyama. 複数のLasso回帰解に基づく解釈性の良い予測モデルを目指した環状ペプチド医薬品の体内安定性予測, 情報処理学会研究報告 バイオ情報学（BIO）, IPSJ SIG Technical Report, 情報処理学会, 2018-BIO-54, 45, 1-8, June 2018.  Official location  
• Naoki Wakui, Masahito Ohue, Shuntaro Chiba, Takashi Ishida, 岩﨑博史, Yutaka Akiyama. 既知の活性／非活性化合物のドッキング解析によるバーチャルスクリーニングに適したタンパク質立体構造モデルの選択, 情報処理学会 第42回バイオ情報学研究会, IPSJ SIG Technical Report, 情報処理学会, 2015-BIO-42, 60, 1-4, June 2015.  Official location  

Degree

• 分子動力学シミュレーションによるアポトーシス抑制性タンパク質阻害剤の標的選択性に関する研究,  Exam Summary,  Doctor (Science),  Tokyo Institute of Technology,  2018/04/30,   
• 分子動力学シミュレーションによるアポトーシス抑制性タンパク質阻害剤の標的選択性に関する研究,  Thesis,  Doctor (Science),  Tokyo Institute of Technology,  2018/04/30,   
• 分子動力学シミュレーションによるアポトーシス抑制性タンパク質阻害剤の標的選択性に関する研究,  Summary,  Doctor (Science),  Tokyo Institute of Technology,  2018/04/30,   

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