論文

• Jason Kurniawan, Takashi Ishida. Comparing Supervised Learning and Rigorous Approach for Predicting Protein Stability upon Point Mutations in Difficult Targets, Journal of Chemical Information and Modeling, Vol. 63, No. 21, pp. 6778-6788, Oct. 2023.
• Takashi Ishida, Jason Kurniawan. Protein Model Quality Estimation using Molecular Dynamics Simulation, ACS OMEGA, American Chemical Society, July 2022.  公式リンク  
  

国内会議発表 (査読なし・不明)

• Jason Kurniawan, Takashi Ishida. Quality Assessment of Protein Structure Modelsusing Molecular Dynamics Trajectories, Informatics in Biology, Medicine and Pharmacology （IIBMP2020）, Sept. 2020.

学位論文

• Prediction of Protein Stability and Stability Changes Using Dynamic Information from Molecular Dynamics Simulation,  Thesis,  Doctor (Engineering),  Tokyo Institute of Technology,  2024/03/26,   
• Prediction of Protein Stability and Stability Changes Using Dynamic Information from Molecular Dynamics Simulation,  Summary,  Doctor (Engineering),  Tokyo Institute of Technology,  2024/03/26,   
• Prediction of Protein Stability and Stability Changes Using Dynamic Information from Molecular Dynamics Simulation,  Exam Summary,  Doctor (Engineering),  Tokyo Institute of Technology,  2024/03/26,   

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