論文

• Hiroshi SHIMADA. Arabidopsis cotyledon-specific chloroplast biogenesis factor CYO1 is a protein disulfide isomerase., Plant Cell, Oct. 2007.
• Hiroshi SHIMADA. Isolation of SIP, a protein that interacts with SPB, a possible transcriptional regulatory factor in Rhodobacter sphaeroides., Plant Cell Physiol., Vol. 48, pp. 1504-1508, Oct. 2007.
• Hiroshi SHIMADA, Mochizuki, M., Ogura, K., Froehlich, J. E., Osteryoung, K. W., Shirano, Y., Shibata, D., Masuda, S., Mori, K., KEN-ICHIRO TAKAMIYA. Arabidopsis cotyledon-specific chloroplast biogenesis factor CYO1 is a protein disulfide isomerase., Plant Cell, Vol. 19, pp. 3157-3169, 2007.
• Fusada, N., Masuda, T., Kuroda, H., Shimada, H., Ohta, H., Takamiya, K.. Identification of a novel cis-element exhibiting cytokinin-dependent protein binding in vitro in the 5’-region of NADPH-protochlorophyllide oxidoreductase gene in cucumber., Plant Mol. Biol., Vol. 59, pp. 631-645, 2005.
• Shimada, H., Koizumi, M., Kuroki, K., Mochizuki, M., Fujimoto, H., Ohta, H., Masuda, T., Takamiya, K.. ARC3, a chloroplast division factor, is a chimera of prokaryotic FtsZ and part of eukaryotic phosphatigylinositol-4-phosphate 5-kinase., Plant Cell Physiology, Vol. 45, pp. 960-967, 2004.
• Shimada, H., Ohno, R., Shibata, M., Ikegami, I., Onai, K., Ohto, M., Takamiya, K.. Inactivation and deficiency of core proteins of photosystems I and II caused by genetical phylloquinone and plastoquinone deficiency but retained lamellar structure in a T-DNA mutant of Arabidopsis., Plalnt Journal, Vol. 41, pp. 627-637, 2004.
• Obayashi, T., Okegawa, T., Sasaki-Sekimoto, Y., Shimada, H., Masuda, T., Asamizu, E., Nakamura, Y., Shibata, D., Tabata, S., Takamiya, K., Ohta, H.. Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis., DNA Res., Vol. 11, pp. 11-25, 2004.
• Yoshiki Yamaryo, Kanai, D, KOICHIRO AWAI, Mie Shimojima, Masuda, T, Hiroshi SHIMADA, KEN-ICHIRO TAKAMIYA, HIROYUKI OHTA. Light and cytokinin play a co-operative role in MGDG synthesis in greening cucumber cotyledons, Plant and Cell Physiology, Vol. 44, No. 8, pp. 844-855, Aug. 2003.  公式リンク  
  
• Masuda, T., Suzuki, T., Shimada, H., Ohta, H., Takamiya, K.. Subcellular localization of two types of ferrochelatase in cucumber., Planta, Vol. 217, pp. 602-609, 2003.
• Nakamura, Y., Arimitsu, H., Yamaryo, Y., Awai, K., Masuda, T., Shimada, H., Takamiya, K., Ohta, H.. Digalactosyldiacylglycerol is a major glycolipid in floral organs of Petunia hybrida., Lipids, Vol. 38, pp. 1107-1112, 2003.
• Masuda, T., Fusada, N., Oosawa, N., Takamatsu, K., Yamamoto, Y.Y., Ohto, M., Nakamura, K., Goto, K., Shibata, D., Shirano, Y, Hayashi, H., Kato, T., Tabata, S., Shimada, H., Ohta, H., Takamiya, K.. Functional analysis of isoforms of NADPH:protochlorophyllide oxidoreductase (POR), PORB and PORC, in Arabidopsis thaliana., Plant Cell Physiol., Vol. 44, pp. 963-974, 2003.
• Yamaryo, Y., Kanai, D., Awai, K., Shimojima, M., Masuda, T., Shimada, H., Takamiya, K., Ohta, H.. Light and cytokinin play a cooperative role in MGDG synthesis in greening cucumber cotyledons., Plant Cell Physiol., Vol. 44, pp. 844-855, 2003.
• Tsuchiya, T., Suzuki, T., Yamada, T., Shimada, H., Masuda, T., Ohta, H., Takamiya, K.. Chlorophyllase as a serine hydrolase: Identification of a putative catalytic triad., Plant Cell Physiol., Vol. 44, pp. 96-101, 2003.
• Komeda, T., Tazumi, K., Shimada, H., Kano, K., Hayashi, T., Saito, H., Tsumura, H., Kato, N., Sakai, Y., Kondo, K.. Production of active bovine cathepsin C (dipeptidyl aminopeptidase I) in the methylotrophic yeast Candida boidinii., Appl. Microbiol. Biotechnol., Vol. 59, pp. 252-8, 2002.
• Masuda, T., Fusada, N., Shiraishi, T., Kuroda, H., Awai, K., Shimada, H., Ohta, H., Takamiya, K.. Identification of two differentially regulated isoforms of protochlorophyllide oxidoreductase (POR) from tobacco revealed a wide variety of light- and development-dependent regulations of POR gene expression among angiosperms., Photosynth. Res.,, Vol. 74, pp. 165-172, 2002.
• Suzuki, T., Masuda, T., Singh, D. P., Tan, F. C., Tsuchiya, T., Shimada, H., Ohta, H., Smith, A. G., Takamiya, K.. Two types of ferrochelatase in photosynthetic and non-photosynthetic tissues of cucumber; their difference in phylogeny, gene expression and localization., J. Biol. Chem., Vol. 277, pp. 4731-4737, 2002.
• Nakamura, A., Shimada, H., Masuda, T., Ohta, H., Takamiya, K. . Two distinct isopentenyl diphosphate isomerases in cytosol and plastid are differentially induced by environmental stresses in tobacco., FEBS Lett, Vol. 506, pp. 61-64, 2001.
• Yamada, T., Kondo, A., Ohta, H., Masuda, T., Shimada, H., Takamiya, K.. Isolation of protease component from maize cysteine protease-cystatin complex: Release of cystatin is not crucial for the activation of the cysteine protease., Plant Cell Physiol, Vol. 42, pp. 710-716, 2001.
• Gad, M., Awai, K., Shimojima, M., Yamaryo, Y., Shimada, H., Masuda, T., Takamiya, K., Ikai, A., Ohta, H.. Accumulation of plant galactolipid affects cell morphology of Escherichia coli., Biochem. Biophys. Res. Commun., Vol. 286, pp. 114-118, 2001.
• Sasaki, Y., Asamizu, E., Shibata, D., Nakamura, Y., Kaneko, T., Awai, K., Amagai, M., Kuwata, C., Tsugane, T., Masuda, T., Shimada, H., Takamiya, K., Ohta, H., Tabata, S.. Monitoring of methyl jasmonate-responsive genes in Arabidopsis by cDNA macroarray: Self-activation of jasmonic acid biosynthesis and crosstalk with other phytohormone signaling pathways., DNA Res., Vol. 8, pp. 153-161, 2001.
• Awai, K., Marechal, E., Block, M. A., Brun, D., Masuda, T., Shimada, H., Takamiya, K., Ohta, H., Joyard, J.. Two types of MGDG synthase genes, found widely in both 16:3 and 18:3 plants, differentially mediate galactolipid syntheses in photosynthetic and non-photosynthetic tissues in Arabidopsis thaliana., Proc. Natl. Acad. Sci. USA,, Vol. 98, pp. 10960-10965, 2001.
• Fusada, N., Masuda, T., Kuroda, H., Shiraishi, T., Shimada, H., Ohta, H., Takamiya, K.. NADPH-protochlorophyllide oxidoreductase in cucumber is encoded by a single gene and its expression is transcriptionally enhanced by illumination., Photosynth. Res., Vol. 64, pp. 147-154, 2000.
• Yamada, T., Ohta, H., Shinohara, A., Iwamatsu, A., Shimada, H., Tsuchiya, T., Masuda, T., Takamiya, K.. A novel cysteine protease from maize isolated in a complex with cystatin., Plant Cell Physiol., Vol. 41, pp. 185-191, 2000.
• Oosawa, N., Masuda, T., Awai, K., Fusada, N., Shimada, H., Ohta, H., Takamiya, K.. Identification of a novel light-inducible isoform of NADPH-protochlorophyllide oxidoreductase from Arabidopsis thaliana., FEBS Lett., Vol. 474, pp. 133-136, 2000.
• Yamada, T., Ohta, H., Shinohara, A., Iwamatsu, A., Shimada, H., Tsuchiya, T., Masuda, T., Takamiya, K.. A Cysteine Protease from maize isolated in a complex with cystatin., Plant Cell Physiol., Vol. 42, pp. 185-191, 2000.
• Shirano, Y., Shimada, H., Kanamaru, K., Fujiwara, M., Tanaka, K., Takahashi, H., Unno, K., Sato, S., Tabata, S., Hayashi, H., Miyake, C., Yokota, A., Shibata, D.. Chloroplast development in Arabidopsis thaliana requires the nuclear-encoded transcription factor sigma B., FEBS Lett., Vol. 485, No. 178-82, 2000.
• Suzuki, T., Masuda, T., Inokuchi, H., Shimada, H., Ohta, H., Takamiya, K.. Overexpression, enzymatic properties and localization of a ferrochelatase of cucumber., Plant Cell Physiol., Vol. 42, pp. 192-199, 2000.
• Masuda, T., Inoue, K., Masuda, M., Nagayama, M., Tamaki, A., Ohta, H., Shimada, H., Takamiya, K.. Magnesium insertion by magenesium chelatase in the biosynthesis of zinc-bacteriochlorophyll a in an aerobic acidophilic bacterium Acidiphilium rubrum., J. Biol. Chem., Vol. 274, pp. 33594-33600, 1999.
• Nishimura K, Shimada H. et al.. Photosynthetic regulatory gene cluster in an aerobic photosynthetic bacterium, Roseobacter denitrificans., J. Gen. Appl. Microbiol., Vol. 45, pp. 129-134, 1999.
• T.Tuchiya, H. Ohta, K. Okawa, A. Iwamatsu, Hiroshi Shimada, T. Masuda, K. Takamiya. Cloning of chlorophyllase, the key enzyme in chlorophyll degradation: finding of a lipase motif and the induction by methyl jasmonate, Proc. Natl. Acad. Sci. USA, Vol. 96, pp. 15362-15367, 1999.
• Misawa, N. Shimada, H.. Metabolic engineering for the production of carotenoids in non-carotenoigenic bacteria and yeasts., J. Biotechnol., Vol. 59, pp. 169-181, 1998.
• Miura, Y., Kondo, K., Saito, T., Shimada, H., Paul D. Fraser, Misawa, N.. Production of the carotenoids lycopene, ß-carotene and astaxanthin in the food yeast Candida utilis., Appl. Environ. Microb., Vol. 64, pp. 1226-1229, 1998.
• Miura, Y., Kondo, K., Shimada, H., Saito, T., Nakamura, K., Misawa, N.. Production of lycopene by the food yeast, Candida utilis that dose not Naturally synthesize carotenoid., Biotechnol. Bioeng., Vol. 58, pp. 306-308, 1998.
• Fraser, P. D., Shimada, H., Misawa N.. Enzymatic confirmation of reactions involved in routes to astaxanthin formation, elucidated using a direct substrate in vitro assay., Eur. J. Biochem., Vol. 252, pp. 229-236, 1998.
• Mizoguchi, H., Masuda, T., Nishimura, K., Shimada, H., Ohta, H., Shioi, Y., Takamiya, K.. Nucleotide sequence and transcriptional analysis of the flanking region of the gene(spb) for the trans-acting factor that controls light-mediated expression of the puf operon in Rhodobacter sphaeroides., Plant Cell Physiol., Vol. 38, pp. 558-597, 1997.
• Nishimura, K., Shimada, H., Ohta, H., Masuda, T., Shioi, Y., Takamiya, K.. Expression of the puf operon in an aerobic photosynthetic bacterium, Roseobacter denitrificans., Plant Cell Physiol., Vol. 37, pp. 153-159, 1996.
• Shimada, H., Wada, T., Handa, H., Ohta, H., Mizoguchi, H., Nishimura, K., Masuda, T., Shioi, Y., Takamiya, K.. A transcription factor with a leucine-zipper motif involved in light-dependent inhibition of expression of the puf operon in the photosynthetic bacterium Rhodobacter sphaeroides., Plant Cell Physiol., Vol. 37, pp. 515-522, 1996.
• Shimada, H, Ohta H., Masuda, T., Shioi, Y., Takamiya, K.. A putative transcription factor binding to the upstream region of the puf operon in Rhodobacter sphaeroides., FEBS Lett., Vol. 328, pp. 41-44, 1993.
• Takamiya, K., Shioi, Y., Shimada, H., Arata, H.. Inhibition of accumulation of bacteriochlorophyll and carotenoids by blue light in aerobic photosynthetic bacterium, Roseobacter denitrificans, during anaerobic respiration., Plant Cell Physiol, Vol. 33, pp. 1171-1174, 1992.
• Shimada, H., Iba, K., Takamiya, K.. Blue-light irradiation reduces the expression of puf and puc operon of Rhodobacter sphaeroides under semi-aerobic conditions., Plant Cell Physiol., Vol. 33, pp. 471-475, 1992.

学位論文

• Study of the regulation of the puf operon expression in a photosynthetic bacterium, Rhodobacter sphaeroides,  本文,  Doctor of Science,  東京工業大学,  1994/--/--, 

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