論文

• Misao Shimojo, Masashi Nakamura, Ginga Kitaura, Yuta Ihara, Shinsuke Shimizu, Koichi Hori, Masako Iwai, Hiroyuki Ohta, Kimitsune Ishizaki, Mie Shimojima. Phosphatidic acid phosphohydrolase modulates glycerolipid synthesis in Marchantia polymorpha and is crucial for growth under both nutrient-replete and -deficient conditions, Planta, Vol. 258, 92, Oct. 2023.
• Yuta Ihara, Takayuki Wakamatsu, Mineyuki Yokoyama, Daisuke Maezawa, Hiroyuki Ohta, Mie Shimojima. Developing a platform for production of the oxylipin KODA in plants, Journal of Experimental Botany, Vol. 73, 3044-3052, May 2022.
• Doshun Ito, Hinata Kawamura, Akira Oikawa, Yuta Ihara, Toshio Shibata, Nobuhiro Nakamura, Tsunaki Asano, Shun-Ichiro Kawabata, Takashi Suzuki, Shinji Masuda. ppGpp functions as an alarmone in metazoa, Communications Biology, Nov. 2020.  公式リンク  
  
• Doshun Ito, Yuta Ihara, Hidenori Nishihara, Shinji Masuda. Phylogenetic analysis of proteins involved in the stringent response in plant cells, Journal of Plant Research, Vol. 130, No. 4, pp. 625–634, July 2017.
• Ihara, Y., Masuda, S.. Cytosolic ppGpp accumulation induces retarded plant growth and development., Plant Signal. Behav., Vol. 11, Jan. 2016.
• Mikika Maekawa, Rina Honoki, Yuta Ihara, Ryoichi Sato, Akira Oikawa, Yuri Kanno, Hiroyuki Ohta, Mitsunori Seo, Kazuki Saito, Shinji Masuda. Impact of the plastidial stringent response in plant growth and stress responses., Nature plants, Vol. 1, pp. 15167, Nov. 2015.
• Yuta Ihara, Hiroyuki Ohta, Shinji Masuda. A highly sensitive quantification method for the accumulation of alarmone ppGpp in Arabidopsis thaliana using UPLC-ESI-qMS/MS, Journal of Plant Research, Springer Japan, 128, 3, 511-518, May 2015.
• Hori K, Maruyama F, Fujisawa T, Togashi T, Yamamoto N, Seo M, Sato S, Yamada T, Mori H, Tajima N, Moriyama T, Ikeuchi M, Watanabe M, Wada H, Kobayashi K, Saito M, Masuda T, Sasaki-Sekimoto Y, Mashiguchi K, Awai K, Mie Shimojima, Shinji Masuda, Masako Iwai, Takashi Nobusawa, Takafumi Narise, Satoshi Kondo, Hikaru Saito, Ryoichi Sato, Masato Murakawa, Yuta Ihara, Yui Oshima-Yamada, Kinuka Ohtaka, Masanori Satoh, Kohei Sonobe, Midori Ishii, Ryosuke Ohtani, Miyu Kanamori-Sato, Rina Honoki, Daichi Miyazaki, Hitoshi Mochizuki, Jumpei Umetsu, Kouichi Higashi, Daisuke Shibata, Yuji Kamiya, Naoki Sato, Yasukazu Nakamura, Satoshi Tabata, Shigeru Ida, Ken Kurokawa, Hiroyuki Ohta. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation., May 2014.  公式リンク  
  

特許など

• 下嶋美恵, 太田啓之, 井原雄太, 若松孝幸, 横山　峰幸. 植物及び９，１０－α－ケトールリノレン酸の製造方法. 特許. 公開. 国立大学法人東京工業大学, 癸巳化成株式会社. 2021/01/26. 特願2021-010502. 2022/08/05. 特開2022-114271. 2022.

学位論文

• 高等植物シロイヌナズナにおける緊縮応答因子ppGppの機能解析,  本文,  博士（理学）,  東京工業大学,  2016/03/26, 
• 高等植物シロイヌナズナにおける緊縮応答因子ppGppの機能解析,  要約,  博士（理学）,  東京工業大学,  2016/03/26,   
• 高等植物シロイヌナズナにおける緊縮応答因子ppGppの機能解析,  論文要旨,  博士（理学）,  東京工業大学,  2016/03/26,   
• 高等植物シロイヌナズナにおける緊縮応答因子ppGppの機能解析,  審査の要旨,  博士（理学）,  東京工業大学,  2016/03/26,   

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