論文

• Minoru Moriyama, Yudai Nishide, Takema Fukatsu, Minoru Moriyama, Yudai Nishide, Atsushi Toyoda, Takehiko Itoh, Takema Fukatsu. Complete genomes of mutualistic bacterial co-symbionts "Candidatus Sulcia muelleri" and "Candidatus Nasuia deltocephalinicola" of the rice green leafhopper Nephotettix cincticeps, Microbiol Resour Announs, Sept. 2023.
• Kohei Nagao, Yoshiki Tanaka, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Souichirou Kubota, Yuji Goto. Bioinformatic and fine-scale chromosomal mapping reveal the nature and evolution of eliminated chromosomes in the Japanese hagfish, Eptatretus burgeri, through analysis of repetitive DNA families, PLoS One, Aug. 2023.
• Takahiro Yamabe, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh. Chromosomal-level genome assembly of the coffee bee hawk moth reveals the evolution of chromosomes and the molecular basis of distinct phenotypes, Genome Biology and Evolution, evad141, July 2023.
• Hiroyuki Tanaka, Tatsuki Hori, Shohei Yamamoto, Atsushi Toyoda, Kentaro Yano, Kyoko Yamane, Takehiko Itoh. Haplotype-resolved chromosomallevel assembly of wasabi (Eutrema japonicum) genome, Scientific Data, (2023)10, 441, July 2023.
• Mizuki Horoiwa, Takashi Nakamura, Hideaki Yuasa, Rei Kajitani, Yosuke Ameda, Tetsuro Sasaki, Hiroki Taninaka, Taisei Kikuchi, Takehisa Yamakita, Toyoda Atsushi, Takehiko Itoh, Nina Yasuda. Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions, Frontiers in Marine Science, Vol. 8, Jan. 2022.  公式リンク  
  
• Michiharu Nakano, Hideki Hirakawa, Eigo Fukai, Atsushi Toyoda, Rei Kajitani, Yohei Minakuchi, Takehiko Itoh, Yohei Higuchi, Toshiaki Kozuka, Hidemasa Bono, Kenta Shirasawa, Ippei Shiraiwa, Katsuhiko Sumitomo, Tamotsu Hisamatsu, Michio Shibata, Sachiko Isobe, Kenji Taniguchi, Makoto Kusaba. A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum, Communications Biology, 4, 1, 1167, Oct. 2021.
• Rei Kajitani, Hideki Noguchi, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Miki Okuno, Atsushi Toyoda, Tomomi Kuwahara, Tetsuya Hayashi, Takehiko Itoh. MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features, Nucleic Acids Research, gkab831, Sept. 2021.
• Hideaki Yuasa, Rei Kajitani, Yuta Nakamura, Kazuki Takahashi, Miki Okuno, Fumiya Kobayashi, Takahiro Shinoda, Atsushi Toyoda, Yutaka Suzuki, Nalinee Thongtham, Zac Forsman, Omri Bronstein, Davide Seveso, Enrico Montalbetti, Coralie Taquet, Gal Eyal, Nina Yasuda, Takehiko Itoh. Elucidation of the speciation history of three sister species of crown-of-thorns starfish (Acanthaster spp.) based on genomic analysis, DNA Research, 28, 4, dsab012, Aug. 2021.
• Nakamura, H., Aibara, M., Kajitani, R., Mrosso, HDJ, Mzighani, SI, Toyoda, A., Itoh, T., Okada, N., Nikaido, M. Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation, Molecular Biology and Evolution, Mar. 2021.  公式リンク  
  
• Koji Inoue, Yuki Yoshioka, Hiroyuki Tanaka, Azusa Kinjo, Mieko Sassa, Ikuo Ueda, Chuya Shinzato, Atsushi Toyoda, Takehiko Itoh. Genomics and Transcriptomics of the green mussel explain the durability of its byssus, Scientific Reports, Vol. 11, No. 1, 5992, Mar. 2021.
• Kyoko Ishino, Hidetoshi Hasuwa, Jun Yoshimura, Yuka W Iwasaki, Hidenori Nishihara, Naomi M Seki, Takamasa Hirano, Marie Tsuchiya, Hinako Ishizaki, Harumi Masuda, Tae Kuramoto, Kuniaki Saito, Yasubumi Sakakibara, Atsushi Toyoda, Takehiko Itoh, Mikiko C Siomi, Shinichi Morishita, Haruhiko Siomi. Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation, Nucleic Acids Research, Vol. 49, No. 5, pp. 2700–2720, Feb. 2021.
• Shin-ichi Arimura, Hiroki Ayabe, Hajime Sugaya, Miki Okuno, Yoshiko Tamura, Yu Tsuruta, Yuta Watari, Shungo Yanase, Takaki Yamauchi, Takehiko Itoh, Atsushi Toyoda, Hideki Takanashi, Nobuhiro Tsutsumi. Targeted gene disruption of ATP synthases 6-1 and 6-2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs, The Plant Journal, Vol. 104, No. 6, 1459-1471, Nov. 2020.
• Nikaido, M., Kondo, S., Zicong Zhang, Wu, J., Nishihara, H., Niimura, Y., Suzuki, S., Touhara K., Suzuki, Y., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Sugano, S., Yoneda, M., Kai, C.. Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera, DNA Research, Vol. 27, Issue 4, Sept. 2020.
• Kai Wang, Ryo Tomura, Wei Chen, Miho Kiyooka, Hinako Ishizaki, Tomoyuki Aizu, Yohei Minakuchi, Masahide Seki, Yutaka Suzuki, Tatsuya Omotezako, Ritsuko Suyama, Aki Masunaga, Charles Plessy, Nicholas M. Luscombe, Christelle Dantec, Patrick Lemaire, Takehiko Itoh, Atsushi Toyoda, Hiroki Nishida, Takeshi A. Onuma. A genome database for a Japanese population of the larvacean Oikopleura dioica, Development Growth & Differentiation, Vol. 62, No. 6, 450-461, Aug. 2020.
• Naohisa Wada, Hideaki Yuasa, Rei Kajitani, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Atsushi Toyoda, Sen-Lin Tang, Yukihiro Higashimura, Hugh Sweatman, Zac Forsman, Omri Bronstein, Gal Eyal, Nalinee Thongtham, Takehiko Itoh, Tetsuya Hayashi, Nina Yasuda. A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of thorns starfish, in the Indo-Pacifc, Microbiome, Vol. 8, No. 1, 123, Aug. 2020.
• Takeuchi M., Kuwahara H., Murakami T., Takahashi K., Kajitani R., Toyoda A., Itoh T., Ohkuma M., Hongoh Y. Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut, The ISME Journal, Vol. 14, pp. 2288–2301, June 2020.
• Keiji Nakamura, Kazunori Murase, Mitsuhiko P. Sato, Atsushi Toyoda, Takehiko Itoh, Jacques Georges Mainil, Denis Piérard, Shuji Yoshino, Keiko Kimata, Junko Isobe, Kazuko Seto, Yoshiki Etoh, Hiroshi Narimatsu, Shioko Saito, Jun Yatsuyanagi, Kenichi Lee, Sunao Iyoda, Makoto Ohnishi, Tadasuke Ooka, Yasuhiro Gotoh, Yoshitoshi Ogura, Tetsuya Hayashi. Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28, Microbial Genomics, Vol. 6, No. 1, e000323, Jan. 2020.
• Tomohiko Kazama, Miki Okuno, Yuta Watari, Shungo Yanase, Chie Koizuka, Yu Tsuruta, Hajime Sugaya, Atsushi Toyoda, Takehiko Itoh, Nobuhiro Tsutsumi, Kinya Toriyama, Nobuya Koizuka, Shin-ichi Arimura. Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing, Nature Plants, Vol. 5, No. 7, 722-730, July 2019.
• Rei Kajitani, Dai Yoshimura, Miki Okuno, Yohei Minakuchi, Hiroshi Kagoshima, Asao Fujiyama, Kaoru Kubokawa, Yuji Kohara, Atsushi Toyoda, Takehiko Itoh. Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions, Nature Communications, 1702, Apr. 2019.
• Yoshitoshi Ogura, Kazuko Seto, Yo Morimoto, Keiji Nakamura, Mitsuhiko P. Sato, Yasuhiro Gotoh, Takehiko Itoh, Atsushi Toyoda, Makoto Ohnishi, Tetsuya Hayashi. Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a, Emerging infectious diseases, Centers for Disease Control and Prevention, Vol. 24, No. 12, 2219-2227, Dec. 2018.
• Toshiya Ando, Takeshi Matsuda, Kumiko Goto, Kimiko Hara, Akinori Ito, Junya Hirata, Joichiro Yatomi, Rei Kajitani, Miki Okuno, Katsushi Yamaguchi, Masaaki Kobayashi, Tomoyuki Takano, Yohei Minakuchi, Masahide Seki, Yutaka Suzuki, Kentaro Yano, Takehiko Itoh, Shuji Shigenobu, Atsushi Toyoda, Teruyuki Niimi. Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles, Nature communications, Nature Publishing Group, Vol. 9, No. 1, 3843, Sept. 2018.
• Ajeng Pramono, Hirokazu Kuwahara, Takehiko Itoh, Toyoda Atsushi, Akinori Yamada, Hongoh Y. Discovery and complete genome sequence of a bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut, Microbes and environments, June 2017.  公式リンク  
  
• Masahito Hayatsu, Kanako Tago, Ikuo Uchiyama, Atsushi Toyoda, Yong Wang, Yumi Shimomura, Takashi Okubo, Futoshi Kurisu, Yuhei Hirono, Kunihiko Nonaka, Hiroko Akiyama, Takehiko Itoh, Hideto Takami. An acid-tolerant ammonia-oxidizing gamma-proteobacterium from soil, Isme Journal, Vol. 11, No. 5, pp. 1130-1141, May 2017.  公式リンク  
  
• Hideto Takami, Atsushi Toyoda, Ikuo Uchiyama, Takehiko Itoh, Yoshihiro Takaki, Wataru Arai, Shinro Nishi, Mikihiko Kawai, Kazuo Shin-ya, Haruo Ikeda. Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1, DNA Research, Vol. 24, No. 2, pp. 169-177, Apr. 2017.  公式リンク  
  
• Arzuba Akter, Tadasuke Ooka, Yasuhiro Gotoh, Seigo Yamamoto, Hiromi Fujita, Fumio Terasoma, Kouji Kida, Masakatsu Taira, Fumiko Nakadouzono, Mutsuyo Gokuden, Manabu Hirano, Mamoru Miyashiro, Kouichi Inari, Yukie Shimazu, Kenji Tabara, Atsushi Toyoda, Dai Yoshimura, Takehiko Itoh, Tomokazu Kitano, Mitsuhiko P. Sato, Keisuke Katsura, Shakhinur Islam Mondal, Yoshitoshi Ogura, Shuji Ando, Tetsuya Hayashi. Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan, Genome Biology and Evolution, Vol. 9, No. 1, pp. 124-133, Jan. 2017.  公式リンク  
  
• Atsushi Hoshino, Vasanthan Jayakumar, Eiji Nitasaka, Atsushi Toyoda, Hideki Noguchi, Takehiko Itoh, Tadasu Shin-I, Yohei Minakuchi, Yuki Koda, Atsushi J. Nagano, Masaki Yasugi, Mie N. Honjo, Hiroshi Kudoh, Motoaki Seki, Asako Kamiya, Toshiyuki Shiraki, Piero Carninci, Erika Asamizu, Hiroyo Nishide, Sachiko Tanaka, Kyeung-Il Park, Yasumasa Morita, Kohei Yokoyama, Ikuo Uchiyama, Yoshikazu Tanaka, Satoshi Tabata, Kazuo Shinozaki, Yoshihide Hayashizaki, Yuji Kohara, Yutaka Suzuki, Sumio Sugano, Asao Fujiyama, Shigeru Iida, Yasubumi Sakakibara. Genome sequence and analysis of the Japanese morning glory Ipomoea nil, Nature Communications, Vol. 7, Nov. 2016.  公式リンク  
  
• Adam M. Session, Yoshinobu Uno, Taejoon Kwon, Jarrod Chapman, Atsushi Toyoda, Shuji Takahashi, Akimasa Fukui, Akira Hikosaka, Atsushi Suzuki, Mariko Kondo, Simon van Heeringen, Ian Quigley, Sven Heinz, Hajime Ogino, Haruki Ochi, Uffe Hellsten, Jessica B Lyons, Oleg Simakov, Nicholas Putnam, Jonathan Stites, Yoko Kuroki, Toshiaki Tanaka, et al.. Genome evolution in the allotetraploid frog Xenopus laevis., Nature, vol. 538, pp. 336–343, Oct. 2016.
• Hideko Urushihara, Hidekazu Kuwayama, Kensuke Fukuhara, Takehiko Itoh, Hiroshi Kagoshima, Tadasu Shin-I, Atsushi Toyoda, Kazuyo Ohishi, Tateaki Taniguchi, Hideki Noguchi, Yoko Kuroki, Takashi Hata, Kyoko Uchi, Kurato Mohri, Jason S King, Robert H Insall, Yuji Kohara, Asao Fujiyama. Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation, Bmc Genomics, Vol. 16, Feb. 2015.  公式リンク  
  
• Rei Kajitani, Kouta Toshimoto, Hideki Noguchi, Atsushi Toyoda, Yoshitoshi Ogura, Miki Okuno, Mitsuru Yabana, Masayuki Harada, Eiji Nagayasu, Haruhiko Maruyama, Yuji Kohara, Asao Fujiyama, Tetsuya Hayashi, Takehiko Itoh. Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads, Genome Research, Vol. 24, No. 8, pp. 1384-1395, Aug. 2014.  公式リンク  
  
• Mikihiko Kawai, Taiki Futagami, Atsushi Toyoda, Yoshihiro Takaki, Shinro Nishi, Sayaka Hori, Wataru Arai, Taishi Tsubouchi, Yuki Morono, Ikuo Uchiyama, Takehiko Itoh, Asao Fujiyama, Fumio Inagaki, Hideto Takami. High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes, Frontiers in Microbiology, Vol. 5, Mar. 2014.  公式リンク  
  
• Masato Nikaido, Hideki Noguchi, Atsushi Toyoda, Yutaka Suzuki, Rei Kajitani, Hikoyuu Suzuki, Miki Okuno, Mitsuto Aibara, Benjamin P. Ngatunga, Semvua Mzighani, Hassan W.J. Kalombo, Kawilarang W.A. Masengi, Josef Tuda, Sadao Nogami, Ryuichiro Maeda, Masamitsu Iwata, Yoshitaka Abe, KOJI FUJIMURA, Masataka Okabe, Takanori Amano, Akiteru Maeno, Toshihiko Shiroishi, Sumio Sugano, Yuji Kohara, Asao Fujiyama, NORIHIRO OKADA. Coelacanth genomes reveal signatures for evolutionary transition from water to land, Genome Research, Cold Spring Harbor Laboratory Press, Vol. 23, No. 10, pp. 1740-1748, Oct. 2013.  公式リンク  
  
• Hideto Takami, Hideki Noguchi, Yoshihiro Takaki, Ikuo Uchiyama, Atsushi Toyoda, Shinro Nishi, Gab-Joo Chee, Wataru Arai, Takuro Nunoura, Takehiko Itoh, Masahira Hattori, Ken Takai. A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem, Plos One, Vol. 7, No. 1, Jan. 2012.  公式リンク  
  
• Yuichi Hongoh, Vineet K. Sharma, Tulika Prakash, Satoko Noda, Hidehiro Toh, Todd D. Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Toyoda Atsushi, Masahira Hattori, Moriya Ohkuma. Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut, Science, 322, 1108-1109, Nov. 2008.
• Yuichi Hongoh, Vineet K. Sharma, Tulika Prakash, Satoko Noda, Todd D. Taylor, Toshiaki Kudo, yoshiyuki sakaki, Toyoda Atsushi, Masahira Hattori, Moriya Ohkuma. Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell, Proceedings of the National Academy of Sciences of the United States of America, 105, 5555-5560, Apr. 2008.

国際会議発表 (査読有り)

• Taejoon Kwon, Shuji Takahashi, Toshiaki Tanaka, Hideki Noguchi, Atsushi Toyoda, Asao Fujiyama, Yutaka Suzuki, Naoto Ueno, Masanori Taira, John B. Wallingford, Edward M. Marcotte. What we can do with over 300 billion bases of RNA-seq data: The case of Xenopus laevis genome project, International Symposium on Genome Science, Jan. 2013.

国内会議発表 (査読有り)

• 田中 裕之, 奈良 雅大, 豊田 敦, 山根 京子, 伊藤 武彦. 異質4倍体ワサビのゲノム解析, 日本育種学会145回, Mar. 2024.
• 吉原佑哉, 増村駿介, 水村航大, 立山和樹, Chakraborty Tapas, 豊田敦, 伊藤武彦, 高橋史也, 馬場崇, 諸橋憲一郎, 松山倫也, 長濱嘉孝, 太田耕平. 性転換魚ホシササノハベラの生殖腺を用いたシングルセルRNA-seq解析と2種の幹細胞, 第47回日本比較内分泌学会大会, Nov. 2023.
• 東秀平, 宇野真, 八尋逸清, 北野載, 豊田敦, 伊藤武彦, Chakraborty Tapas, 松山倫也, 太田耕平. カタクチイワシの濾胞刺激ホルモン（Fsh）とその受容体, 日本水産学会秋季大会, Sept. 2023.
• Makoto Kashima, Rei Komura, Rei Kajitani, Takehiko Itoh, Atsushi Toyoda. Knowledge and remaining questions of adult pluripotent stem cell in freshwater planarians., the 56th Annual Meeting of the Japanese Society for Developmental Biology, July 2023.

国際会議発表 (査読なし・不明)

• Takahiro Yamabe, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh. Chromosome-Level De Novo Genome Assembly and Comparative Genome Analysis of the Coffee Bee Hawk Moth, Cephonodes Hylas, Plant & Animal Genome Conference (PAG30), Jan. 2023.
• Yo Yamasaki, Tomoyuki Kokita, Koki Kato, Asato Irifune, Mitsuki Kuroda, Hiroshi Takahashi, Yoshiyasu Machida, Asano Ishikawa, Mikiko Tanaka, Seiichi Mori, Atsushi Toyoda, Jun Kitano. Determinism and contingency in the molecular genetic basis of parallel armor plate evolution during stickleback radiation, Congress of the European Society for Evolutionary Biology, Aug. 2022.
• Hatashima, R., Toyoda, A., Kajitani, Takehiko Itoh, Nikaido, M.. A key factor for parallel evolution of hypertrophied lips in East African cichlid fishes, The 2nd AsiaEvo Conference, Aug. 2021.
• Rei Kajitani, Miki Okuno, Hiroyuki Tanaka, Atsushi Toyoda, Takehiko Itoh. Platanus-allee is a de novo haplotype assembler designed for organisms with highly divergent haplotypes: an update, Plant and Animal Genome XXVIII Conference, Jan. 2020.
• Ajeng Pramono, Hirokazu Kuwahara, Takehiko Itoh, Toyoda Atsushi, Moriya Ohkuma, Akinori Yamada, Yuichi Hongoh. Bacteriophage from an obligate intracellular symbiont of a cellulolytic protist in the termite gut, Prorhinotermes japonicus (Isoptera: family Rhinotermitidae), The 5th International Conference on Biological Science, Sept. 2017.

国内会議発表 (査読なし・不明)

• 松田(今井) 典子, 室 智大, 福井 崇弘, 木内 隆史, 阿部 佳澄, 髙嶋 彰太, 豊田 敦, 鈴木 穣, 伊藤 武彦, 勝間 進. ボルバキア感染アワノメイガ細胞のscMultiome解析, 日本蚕糸学会, Mar. 2024.
• 田中 裕之, 堀立樹, 山本祥平, 豊田敦, 矢野健太郎, 山根京子, 伊藤武彦. ワサビゲノム解読の現状, 日本育種学会第143回講演会, Mar. 2023.
• 松岡健太朗, 持丸侑太, 奥野未来, 清岡美穂, 石崎比奈子, 豊田敦, 黒岩麻里, 伊藤武彦. トクノシマトゲネズミの新規ゲノム構築とX染色体上祖先Y領域の比較解析, 第45回日本分子生物学会年会, Nov. 2022.
• 持丸侑太, 松岡健太朗, 奥野未来, 清岡美穂, 石崎比奈子, 豊田敦, 黒岩麻里, 伊藤武彦. オキナワトゲネズミの新規ゲノム配列決定とneo性染色体のゲノム解析, 第45回日本分子生物学会年会, Nov. 2022.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. 免疫関連遺伝子の発現消失がもたらしたシクリッドの唇肥大化平行進化, 日本進化学会第26回沼津大会, Aug. 2022.
• 畑島諒, 待井長敏, 豊田敦, 梶谷嶺, 長澤竜樹, 伊藤武彦, 二階堂雅人.. 免疫システムがもたらしたシクリッドの唇肥大化平行進化, 第2回日本遺伝学会春の分科会, Mar. 2022.
• 山部貴央, 梶谷嶺, 豊田敦, 伊藤武彦. スズメガ科昆虫オオスカシバの新規ゲノムアセンブリと比較ゲノム解析, 第92回日本動物学会オンライン米子大会, Sept. 2021.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. 東アフリカ産シクリッドで見られる唇肥大化平行進化の分子メカニズム, 日本進化学会第23回東京大会, Aug. 2021.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドにおける唇肥大化の平行進化メカニズム, 日本動物学会第91回大会, Sept. 2020.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドにおける唇肥大化の平行進化メカニズム, 日本進化学会第22回大会, Sept. 2020.
• 畑島諒, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドにおける唇肥大化の平行進化メカニズム解明, 日本遺伝学会第92回大会, Sept. 2020.
• 中村遥奈, 畑島諒, 相原光人, 豊田敦, 伊藤武彦, 二階堂雅人. ヴィクトリア湖産シクリッドHaplochromis chilotesの全ゲノム配列解析による分集団における適応過程の解明, 日本進化学会第22回大会, Sept. 2020.
• 中村遥奈, 相原光人, 豊田敦, 伊藤武彦, 二階堂雅人. 全ゲノム解析によるヴィクトリア湖産シクリッドにおける種特有の適応パターンの解明, 日本遺伝学会第92回大会, Sept. 2020.
• 大内俊, 梶谷嶺, 豊田敦, 伊藤武彦. Hi-C法による染色体レベルのscaffolding，ハプロタイプ構築手法の開発と高ヘテロ接合性サンプル（イトマキヒトデ）への応用, 日本動物学会第91回大会2020, Sept. 2020.
• 樋口拓人, 西原秀典, 梶谷嶺, 豊田敦, 伊藤武彦, 岡田典弘, 二階堂雅人. 東アフリカ産淡水魚シクリッドゲノムにおける祖先多型遺伝子座の起源, 日本動物学会第90回大会, Sept. 2019.
• 畑島諒, 鈴木健太, 豊田敦, 梶谷嶺, 伊藤武彦, 二階堂雅人. シクリッドの唇肥大化における平行進化の遺伝的メカニズム解明, 日本遺伝学会第91回大会, Sept. 2019.
• 中村遥奈, 畑島諒, 豊田敦, 伊藤武彦, 二階堂雅人. 全ゲノム比較が明らかにしたヴィクトリア湖産シクリッド3種の適応プロセス, 日本進化学会第21回大会, Aug. 2019.
• 樋口拓人, 西原秀典, 梶谷嶺, 豊田敦, 伊藤武彦, 岡田典弘, 二階堂雅人. ゲノムワイドなSINE 挿入解析から東アフリカ産シクリッドにおける祖先多型の持続性を解明する, 日本進化学会第21回大会, Aug. 2019.
• 名倉有一, 桑原宏和, 原田 真実, 豊田敦, 大熊盛也, 本郷裕一. シロアリ腸内原生生物の核内に共生する未培養Verrucomicrobia門細菌の多様性とゲノム解析, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 田中良樹, 梶谷嶺, 豊田敦, 後藤友二, 久保田宗一郎, 伊藤武彦. ショートリードを用いたリピート配列のde novo検出法の開発, Sept. 2017.
• 高橋秀治, 豊田敦, 宇野好宣, 黒木陽子, 彦坂暁, 原本悦和, 田中利明, 西城智仁, 野口英樹, 松田洋一, 近藤真理子, 藤山秋佐夫, 上野直人, 平良眞規, 浅島誠. Xenopus laevis全ゲノム解析：アフリカツメガエルnodal5 と nodal6遺伝子クラスターについての解析, 第３８回日本分子生物学会、第８８回日本生化学会 合同大会, 日本分子生物学会、日本生化学会, Dec. 2015.

その他の論文・著書など

• Adam M. Session, Yoshinobu Uno, Taejoon Kwon, Jarrod Chapman, 豊田 敦, Shuji Takahashi, Akimasa Fukui, Akira Hikosaka, Atsushi Suzuki, Mariko Kondo, Simon van Heeringen, Ian Quigley, Sven Heinz, Hajime Ogino, Haruki Ochi, Uffe Hellsten, Jessica B Lyons, Oleg Simakov, Nicholas Putnam, Jonathan Stites, 黒木 陽子, 田中 利明, et al.. アフリカツメガエルの複雑なゲノムを解読：脊椎動物への進化の原動力「全ゲノム重複」の謎に迫る, 日経バイオテク on line, Oct. 2016.  公式リンク  
  
• Adam M. Session, Yoshinobu Uno, Taejoon Kwon, Jarrod Chapman, 豊田 敦, Shuji Takahashi, Akimasa Fukui, Akira Hikosaka, Atsushi Suzuki, Mariko Kondo, Simon van Heeringen, Ian Quigley, Sven Heinz, Hajime Ogino, Haruki Ochi, Uffe Hellsten, Jessica B Lyons, Oleg Simakov, Nicholas Putnam, Jonathan Stites, 黒木 陽子, 田中 利明, et al.. アフリカツメガエルの複雑なゲノムを解読―脊椎動物への進化の原動力「全ゲノム重複」の謎に迫る―, 東工大ニュース, Oct. 2016.  公式リンク  
  

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