論文

• 村上聡, 岡田有意, 山下栄樹. RND型多剤排出トランスポーターの構造機能研究～輸送素過程の考察, 生物物理, Vol. 64, No. 4, p. 185-189, July 2024.  公式リンク  
  
• Kazuyuki Tao, Shin-ichiro Narita, Ui Okada, Satoshi Murakami, Hajime Tokuda. Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking, J BIOCHEM, Volume 175, Issue 4, Page 427-437, Mar. 2024.  公式リンク  
  
• Takaaki Kato, Ui Okada, Li-Wei Hung, Eiki Yamashita, Heung-Bok Kim, Chang-Yub Kim, Thomas C. Terwilliger, Herbert P. Schweizer, Satoshi Murakami. Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism, Proceedings of the National Academy of Sciences, July 2023.  公式リンク  
  
• Ui Okada, Satoshi Murakami. Structural and functional characteristics of the tripartite ABC transporter, Microbiology, Nov. 2022.  公式リンク  
  
• Nagakumar Bharatham, Purnendu Bhowmik, Maho Aoki, Ui Okada, Sreevalli Sharma, Eiki Yamashita, Anirudh P. Shanbhag, Sreenath Rajagopal, Teby Thomas, Maitrayee Sarma, Riya Narjari, Savitha Nagaraj, Vasanthi Ramachandran, Nainesh Katagihallimath, Santanu Datta, satoshi murakami. Structure and function relationship of OqxB efflux pump from Klebsiella pneumoniae, Nature Communications, Vol. 12, No. 1, Dec. 2021.  公式リンク  
  
• Satoshi Murakami, Ui Okada, Hendrik W. Veen. Tripartite transporters as mechanotransmitters in periplasmic alternating‐access mechanisms, FEBS Letters, Vol. 594, No. 23, pp. 3908-3919, Dec. 2020.  公式リンク  
  
• 岡田有意, 村上聡. 三者複合体形成型ABCトランスポーターMacBの構造解析, ファルマシア, 56, 6, 499-503, June 2020.
• Tomonari Horikawa, Li-Wei Hung, Heung-Bok Kim, David Shaya, Chang-Yub Kim, Thomas C. Terwilliger, Eiki Yamashita, Maho Aoki, Ui Okada, Satoshi Murakami. BpeB, a major resistance-nodulation-cell division transporter from Burkholderia cenocepacia: construct design, crystallization and preliminary structural analysis, Acta Crystallographica Section F Structural Biology Communications, Vol. 74, No. 11, pp. 710-716, Nov. 2018.  公式リンク  
  
• Ui Okada, Eiki Yamashita, Arthur Neuberger, Mayu Morimoto, Hendrik W. van Veen, Satoshi Murakami. Crystal structure of tripartite-type ABC transporter MacB from Acinetobacter baumannii, Nature Communications, Vol. 8, No. 1, Dec. 2017.  公式リンク  
  
• Fitzpatrick AWP, Llabrés S, Neuberger A, Blaza JN, Bai XC, Okada U, Murakami S, van Veen HW, Zachariae U, Scheres SHW, Luisi BF, Du D. Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump., May 2017.  公式リンク  
  
• Hayashi, Takeshi, Tanaka, Yoshikazu, Sakai, Naoki, Ui Okada, Yao, Min, Watanabe, Nobuhisa, Tamura, Tomohiro, Tanaka, Isao. Structural and genomic DNA analysis of the putative TetR transcriptional repressor SCO7518 from Streptomyces coelicolor A3(2), Febs Letters, Vol. 588, No. 23, pp. 4311-4318, 2014.
• Hayashi, Takeshi, Tanaka, Yoshikazu, Sakai, Naoki, Ui Okada, Yao, Min, Watanabe, Nobuhisa, Tamura, Tomohiro, Tanaka, Isao. SCO4008, a Putative TetR Transcriptional Repressor from Streptomyces coelicolor A3(2), Regulates Transcription of sco4007 by Multidrug Recognition, Journal of Molecular Biology, Vol. 425, No. 18, pp. 3289-3300, 2013.
• Ui Okada, Kazuya Kondo, Takeshi Hayashi, Nobuhisa Watanabe, Min Yao, Tomohiro Tamura, Isao Tanaka. Structural and functional analysis of the TetR-family transcriptional regulator SCO0332 from Streptomyces coelicolor, Acta Crystallographica Section D Biological Crystallography, 64, 2, pp. 198-205, Feb. 2008.
• Ui Okada, Naoki Sakai, Min Yao, Nobuhisa Watanabe, Isao Tanaka. Structural Analysis of the Transcriptional Regulator Homolog Protein From Pyrococcus horikoshii OT3, PROTEINS: Structure, Function, and Bioinformatics, 63, 1084 - 1086, Feb. 2006.
• Itou, H., Okada, U., Suzuki, H., Yao, M., Wachi, M., Watanabe, N., Tanaka, I.. The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: Structural and functional analysis of a newly identified transcription factor from genomic DNA analysis, J. Biol. Chem., Vol. 280, No. 46, pp. 38711-38719, Nov. 2005.

著書

• Ui Okada, satoshi murakami. Structural and functional aspects on the macrolide efflux transporter, MacB — A tripartite ABC transporter, Therapeutic Protein Targets for Drug Discovery and Clinical Evaluation, World Scientific, pp. 1-23, Oct. 2022.

国際会議発表 (査読有り)

• Ui Okada, Takaaki Kato, Li-Wei Hung, Eiki Yamashita, Heung-Bok Kim, Chang Yub Kim, Thomas C. Terwilliger, Herbert P. Schweizer, Satoshi Murakami. Structural and functional analysis of multidrug RND transporters from Burkholderia pseudomallei, Multi-Drug Efflux Systems Gordon Research Conference, Mar. 2023.
• Ui Okada, Eiki Yamashita, Arthur Neuberger, Mayu Morimoto, Hendrik W. van Veen, Satoshi Murakami. Crystal structure of tripartite-type ABC transporter MacB from Acinetobacter baumannii, Multi-Drug Efflux Systems Gordon Research Conference, Apr. 2019.

国際会議発表 (査読なし・不明)

• Ui Okada. Crystal structure of tripartite-type ABC transporter MacB from Acinetobacter baumannii, PDB50 Anniversary Symposium in Asia, Nov. 2021.  公式リンク  
  

その他の論文・著書など

• Takaaki Kato, Li-Wei Hung, Eiki Yamashita, Ui Okada, Thomas C. Terwilliger, Satoshi Murakami. 7WLS: Crystal structure of the multidrug efflux transporter BpeB from Burkholderia pseudomallei, July 2023.  公式リンク  
  
• Takaaki Kato, Li-Wei Hung, Eiki Yamashita, Ui Okada, Thomas C. Terwilliger, Satoshi Murakami. 7WLV: Crystal structure of the multidrug efflux transporter BpeF from Burkholderia pseudomallei, July 2023.  公式リンク  
  
• S. Murakami, U. Okada, E. Yamashita. 7CZ9: Crystal structure of multidrug efflux transporter OqxB from Klebsiella pneumoniae, Sept. 2021.  公式リンク  
  
• S. Murakami, U. Okada, E. Yamashita. 5WS4: Crystal structure of tripartite-type ABC transporter MacB from Acinetobacter baumannii, Nov. 2017.  公式リンク  
  
• S. Murakami, U. Okada, E. Yamashita. 5GKO: Crystal structure of tripartite-type ABC transporter, MacB from Acinetobacter baumannii, Nov. 2017.  公式リンク  
  
• A.W.P. Fitzpatrick, S. Llabres, A. Neuberger, J.N. Blaza, X.-C. Bai, U. Okada, S. Murakami, H.W. van Veen, U. Zachariae, S.H.W. Scheres, B.F. Luisi, D. Du. 5NIK: Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump, May 2017.  公式リンク  
  
• A.W.P. Fitzpatrick, S. Llabres, A. Neuberger, J.N. Blaza, X.-C. Bai, U. Okada, S. Murakami, H.W. van Veen, U. Zachariae, S.H.W. Scheres, B.F. Luisi, D. Du. 5NIL: Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump-MacB section, May 2017.  公式リンク  
  
• Okada U, Kondo K, Yao M, Watanabe N, Tanaka I. 2ZCX: Crystal structure of TetR family transcriptional regulator SCO7815, Nov. 2007.  公式リンク  
  
• Okada U, Kondo K, Watanabe N, Yao M, Tanaka I. 2ZB9: Crystal structure of TetR family transcription regulator SCO0332, Oct. 2007.  公式リンク  
  
• Okada U, Sakai N, Tajika Y, Yao M, Watanabe N, Tanaka I. 1UB9: Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3, Apr. 2003.  公式リンク  
  

学位論文

• Structural and functional analysis of TetR family transcriptional regulators from Streptomyces coelicolor,  Thesis,  Doctor (Science),  Hokkaido University,  2008/03/25, 

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