論文

• Rei Kajitani, Kouta Toshimoto, Hideki Noguchi, Atsushi Toyoda, Yoshitoshi Ogura, Miki Okuno, Mitsuru Yabana, Masayuki Harada, Eiji Nagayasu, Haruhiko Maruyama, Yuji Kohara, Asao Fujiyama, Tetsuya Hayashi, Takehiko Itoh. Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads, Genome Research, Vol. 24, No. 8, pp. 1384-1395, Aug. 2014.  公式リンク  
  
• Masato Nikaido, Hideki Noguchi, Atsushi Toyoda, Yutaka Suzuki, Rei Kajitani, Hikoyuu Suzuki, Miki Okuno, Mitsuto Aibara, Benjamin P. Ngatunga, Semvua Mzighani, Hassan W.J. Kalombo, Kawilarang W.A. Masengi, Josef Tuda, Sadao Nogami, Ryuichiro Maeda, Masamitsu Iwata, Yoshitaka Abe, KOJI FUJIMURA, Masataka Okabe, Takanori Amano, Akiteru Maeno, Toshihiko Shiroishi, Sumio Sugano, Yuji Kohara, Asao Fujiyama, NORIHIRO OKADA. Coelacanth genomes reveal signatures for evolutionary transition from water to land, Genome Research, Cold Spring Harbor Laboratory Press, Vol. 23, No. 10, pp. 1740-1748, Oct. 2013.  公式リンク  
  
• Hideto Takami, Hideki Noguchi, Yoshihiro Takaki, Ikuo Uchiyama, Atsushi Toyoda, Shinro Nishi, Gab-Joo Chee, Wataru Arai, Takuro Nunoura, Takehiko Itoh, Masahira Hattori, Ken Takai. A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem, Plos One, Vol. 7, No. 1, Jan. 2012.  公式リンク  
  
• Atsushi Sato, Kenshiro Oshima, Hideki Noguchi, Masahiro Ogawa, Tadashi Takahashi, Tetsuya Oguma, Yasuji Koyama, Takehiko Itoh, Masahira Hattori, Yoshiki Hanya. Draft Genome Sequencing and Comparative Analysis of Aspergillus sojae NBRC4239, DNA Research, Vol. 18, No. 3, pp. 165-176, Apr. 2011.  公式リンク  
  
• Hideki Noguchi, Takeaki Taniguchi, Takehiko Itoh. MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes, DNA Research, Vol. 15, No. 6, pp. 387-396, Dec. 2008.  公式リンク  
  
• Hideki Noguchi, Takeaki Taniguchi. MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes, DNA research, Oxford University Press, 15, 6, 387-396, Dec. 2008.
• Ken Kurokawa, Tomomi Kuwahara, Kenshiro Oshima, Hidehiro Toh, Atsushi Toyoda, Hideto Takami, Hidetoshi Morita, Vineet K. Sharma, Tulika P. Srivastava, Todd D. Taylor, Hideki Noguchi, Hiroshi Mori, Yoshitoshi Ogura, Dusko S. Ehrlich, Kikuji Itoh, Toshihisa Takagi, yoshiyuki sakaki, Tetsuya Hayashi, Masahira Hattori. Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes, DNA research, Oxford University Press, 14, 4, 169-181, Aug. 2007.
• Todd D. Taylor, Hideki Noguchi, Yasushi Totoki, Yoko Kuroki, Ken Dewar, Christine Lloyd, Tadayuki Takeda, Dae-Won Kim, Xinwei She, Karen F. Barlow, Toby Bloom, Elspeth Bruford, Jean L. Chang, Christina A. Cuomo, Evan Eichler, Michael G. FitzGerald, David B. Jaffe, LaButti Kurt, Robert Nicol, Hong-Seog Park, Christopher Seaman, Carrie Sougnez, Xiaoping Yang, Andrew R. Zimmer, Michael C. Zody, Bruce W. Birren, Chad Nusbaum, Asao Fujiyama, Masahira Hattori, Jane Rogers, Eric S. Lander, yoshiyuki sakaki. Human chromosome 11 DNA sequence and analysis including novel gene identification, Nature, Nature Publishing Group, 440, 7083, 497-500, Mar. 2006.
• Atsushi Toyoda, Hideki Noguchi, Todd D. Taylor, Mathew T. Pletcher, Yoshiyuki Sakaki, Roger H. Reeves, Masahira Hattori. Comparative Genomic Sequence Analysis of the Human Chromosome 21 Down Syndrome Critical Region, Genome Research, Oxford University Press, 12, 9, 1323-1332, Sept. 2002.

国内会議発表 (査読なし・不明)

• 梶谷嶺, 野口英樹, 桑原知己, 小椋義俊, 林哲也, 伊藤武彦. メタゲノム用de novoアセンブリ・クラスタリングツールMetaPlatanusの開発, 第9回日本ゲノム微生物学会年会, Mar. 2015.
• 吉村慶人, 伊藤武彦, 野口英樹. 454配列に対応したab initio遺伝子予測ツールの開発, 第34回日本分子生物学会年会, Dec. 2011.
• 梶谷嶺, 野口英樹, 伊藤武彦. 新規ゲノムアセンブラー：Platanus, 第34回日本分子生物学会年会, Dec. 2011.

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